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2. Student Produced Videos - An Innovative and Creative Approach to Assessment
- Author
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Speed, Caroline J., Lucarelli, Giuseppe A., and Macaulay, Janet O.
- Abstract
The ability to think critically and creatively are essential graduate attributes for science students yet many science graduates lack these skills and may struggle to gain employment. As undergraduate science educators, we are aiming to improve critical thinking, creativity and the promotion of deeper learning in our students. We have designed and implemented an innovative and creative approach to assessment to engage students with laboratory practicals, which are a core component of the biomedical sciences at Monash University. Through the introduction of an innovative approach to assessment using small group student produced videos, we aim to improve skills in theoretical understanding, data analysis and presentation. This paper details the design of instructional guidelines for small group student produced video assessment, the implementation of the video assessment into 2nd and 3rd year biochemistry laboratory practical classes and the generation of research outcomes and evaluation of this novel assessment technique. Observation of student behaviour during the laboratory classes found students were filming/photographing their experiments and appeared far more engaged with the actual experiments than in previous years. In addition, many student videos demonstrated high levels of creativity and critical thinking. The student produced video assessment did provide an opportunity for creative and critical thinking in students but there are still aspects to be improved.
- Published
- 2018
3. Understanding the Pedagogical Practices of Biochemistry and Molecular Biology Academics
- Author
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Espinosa, Allen A., Verkade, Heather, Mulhern, Terrence D., and Lodge, Jason M.
- Abstract
As higher education transitions from an exclusivist to a more accessible endeavour, class sizes are continuously increasing, prompting academics to explore different strategies to facilitate quality learning. In this paper, we explore the current practices of Australian biochemistry and molecular biology academics to understand how academics cope with the mass education context, and whether there are specific blocks to the introduction of active learning into these classrooms. We utilised inductive thematic analysis to identify the themes underpinning the pedagogical practices of a selection of academics in biochemistry and molecular biology. These data indicated that these academics: (1) consider themselves to be, and are, traditional teachers; (2) believe that their students will learn better the way that they were taught at university; (3) are trying to shift their teaching from traditional to non-traditional; and (4) practice reflective teaching. These findings suggest that these pedagogical practices are primarily influenced by the academics' own presumptions and educational beliefs on how the specific discipline should be taught. Engagement in professional development appears to be influencing some academics to shift their teaching towards a more active and student-centred focus, but still, a lack of formal education qualification is holding many academics back from fully engaging with current pedagogical best practice. The findings in this study are broadly applicable to many higher education disciplines.
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- 2020
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4. Biochemistry, Molecular Biology, and the Changing Tertiary Education Landscape in Australia
- Author
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Rowland, Susan L.
- Abstract
In this article, the author provides information about the Australian education landscape and discusses three articles that focus on innovative laboratory teaching programs. Each of the articles presents a novel laboratory teaching mechanism that has evolved to successfully address a perceived weakness or problem in the laboratory program. It should be noted that each problem is slightly different, as is each solution. (Contains 1 table and 1 figure.)
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- 2012
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5. How Do Students Interact With the Primary Scientific Literature in an Undergraduate Science Program?
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Yi Hou, Verkade, Heather, and van Driel, Jan
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SCIENTIFIC literature ,UNDERGRADUATE programs ,SCIENCE in literature ,BIOCHEMISTRY ,BLOOM'S taxonomy ,MOLECULAR biology ,SCIENCE students - Abstract
The ability to read, understand, and interpret primary scientific literature is an essential skill for undergraduate students in science. This study aimed to provide a detailed understanding of how second- and third-year undergraduate students in a biochemistry and molecular biology major at the University of Melbourne in Australia feel about reading research articles and how often they are expected to do so. Teachers’ expectations of the students’ use of literature in their assessment tasks were compared with the experiences of students with their reading of the literature. There was a clear increase in the confidence and reported skills of third-year students, as well as an increase in the importance they see in reading the literature, compared with the second-year students. This increase was matched by much higher teacher expectations that students would read the literature for their assessment tasks. This expectation can be seen in the shift from a low proportion of relatively low-level literature “understand” interactions on Bloom’s revised taxonomy to a larger proportion of marks for higher-level “analyze.” A more guided approach with secondyear students would be beneficial. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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6. Agent orange: its Australian aftermath.
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Smith FB
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- Australia, History, Modern 1601-, Vietnam, Biochemistry, Chemistry, Pesticides, Public Health, Warfare
- Published
- 1991
7. Australian Dental Research Foundation Special Research Supplement 2022.
- Subjects
DENTAL caries ,PERIODONTITIS ,DENTAL research ,MEDICAL sciences ,MOLECULAR biology ,BIOCHEMISTRY ,LIFE sciences - Published
- 2022
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8. Clinicopathological and Epidemiological Findings in Pet Cats Naturally Infected with Feline Immunodeficiency Virus (FIV) in Australia.
- Author
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Carlton, Caroline, Norris, Jacqueline M., Hall, Evelyn, Ward, Michael P., Blank, Stephanie, Gilmore, Shelby, Dabydeen, Anjuli, Tran, Vivian, and Westman, Mark E.
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FELINE immunodeficiency virus ,CATS ,VACCINE effectiveness ,VACCINE trials ,VETERINARY hospitals ,SYMPTOMS - Abstract
Feline immunodeficiency virus (FIV) infection in experimentally infected domestic cats produces characteristic clinical manifestations including hematological changes, neurological disease, neoplasia (most notably lymphoma) and lymphopenia-mediated immunodeficiency predisposing cats to a range of secondary infections. Conflicting reports exist, however, with regard to disease associations and survival time in naturally FIV-infected cats. The purpose of this retrospective case–control study was to investigate the effect of natural FIV infection on hematological, blood biochemical and urinalysis parameters and survival time in three cohorts of pet cats in Australia. Cohorts 1 and 2 were recruited from a large veterinary hospital in Melbourne, Victoria (n = 525 and 282), while a third cohort consisted of cats recruited from around Australia as part of a FIV field vaccine efficacy trial (n = 425). FIV-infected cats in cohorts 1, 2 and 3 were found to have 15/37 (41%), 13/39 (33%) and 2/13 (15%) clinicopathological parameters significantly different to FIV-uninfected cats, respectively. Two changes in FIV-infected cats in cohort 1, hypochromia (low hemoglobin) and hyperglobulinemia, were outside the supplied reference intervals and should serve as diagnostic triggers for FIV testing. Kaplan–Meier survival analysis of cats in cohorts 1 and 2 combined did not find any difference between FIV-infected and FIV-uninfected cats, however a confounding factor was a large euthanasia rate within the first 12 months in both groups. Three significant (p < 0.05) spatial clusters of FIV infection were identified in Melbourne. A possible relationship between FIV infection status and socioeconomic disadvantage was discovered, based on three government indices of socioeconomic status (p < 0.001). Until longitudinal field studies are performed in Australia to further investigate the long-term effects of natural FIV infection, Australian veterinarians should consider FIV to be an important infection of pet cats, and recommend measures to prevent FIV infection. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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9. Suitability Evaluation of Three Tropical Pasture Species (Mulato II, Gatton Panic, and Rhodes Grass) for Cultivation under a Subtropical Climate of Australia.
- Author
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Jayasinghe, Priyanath, Donaghy, Daniel J., Barber, David G., Pembleton, Keith G., and Ramilan, Thiagarajah
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PASTURES ,QUANTUM efficiency ,GRASSES ,BRACHIARIA ,SPECIES ,BIOCHEMISTRY - Abstract
Exploring improved tropical forages is considered to be an important approach in delivering quality and consistent feed options for dairy cattle in tropical and subtropical regions. The present study aimed to study the suitability of three improved tropical grasses, Chloris gayana 'Rhodes grass cv. Reclaimer' (RR), Megathyrsus maximus 'Gatton Panic' (GP), and Brachiaria ruziziensis x B. decumbens x B. brizantha 'Brachiaria Mulato II' (BM) evaluating their carbon assimilation, canopy structure, herbage plant–part accumulation and quality parameters under irrigated conditions. An experiment was conducted at Gatton Research Dairy (27°54′ S, 152°33′ E, 89 m asl) Queensland, Australia, which has a predominantly subtropical climate. Photosynthesis biochemistry, canopy structure, herbage accumulation, plant part composition, and nutritive value were evaluated. Photosynthesis biochemistry differed between pasture species. Efficiency of CO
2 assimilation was highest for GP and quantum efficiency was highest for BM. Pasture canopy structure was significantly affected by an interaction between pasture species and harvest. Forage biomass accumulation was highest in GP, while BM produced more leaf and less stem compared to both GP and RR. A greater leafy stratum and lower stemmy stratum depth were observed in the vertical sward structure of BM. Brachiaria Mulato II showed greater carbon partitioning to leaves, leaf: stem ratio, canopy, and leaf bulk density. It also demonstrated greater nutritive value (Total digestible nutrients (TDN), acid detergent fibre (ADF), neutral detergent fibre (NDF), neutral detergent insoluble protein (NDICP), Starch, nonfibre carbohydrates (NFC), metabolisable energy (ME), mineral profile (Mg, P, K, Fe, Zn) and dietary cation–anion difference (DCAD) for leaf, stem, and the whole plant. Greater quantum efficiency, leaf accumulation, and nutritive value of BM observed in the present study suggest BM as an attractive forage option for dairying that warrants further research in pasture-based systems in tropical and subtropical climates. [ABSTRACT FROM AUTHOR]- Published
- 2022
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10. Riparian eucalypt biogeochemical expression of groundwater salinity, Murray River, South Australia.
- Author
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McLennan, Stephanie M., Hill, Steven M., Hatch, Michael, Barovich, Karin, and Berens, Volmer
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RIPARIAN areas ,EUCALYPTUS ,BIOCHEMISTRY ,GROUNDWATER ,SALINITY ,WATER salinization - Abstract
Salinisation of floodplains along the Murray River is a significant environmental and social problem in south-eastern Australia that can be expensive and time-consuming to monitor. The potential of plant biogeochemistry as an environmental monitoring tool, specifically its innovative application to groundwater salinity detection, is explored in this paper. Major and trace element biogeochemical data were compared to data from three geophysical surveys in the study area as well as field observations of the underlying stratigraphy. The result is an understanding of how groundwater chemistry can be characterised by plants, specifically river red gum (Eucalyptus camaldulensis) and black box (Eucalyptus largiflorens) leaves. From the survey it is evident that E. camaldulensisand E. largiflorenswere both successful in expressing high salinity levels in the subsurface. Molybdenum was the most suitable pathfinder element for high salinity groundwater. The study has important implications for interpreting biogeochemical mineral exploration results; anomalous element concentrations need to be interpreted in relation to salinity levels. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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11. Acute post‐streptococcal glomerulonephritis in Central Australia.
- Author
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Dowler, James and Wilson, Angela
- Subjects
ABORIGINAL Australians ,BIOCHEMISTRY ,COMMUNICABLE diseases ,COMPLEMENT (Immunology) ,CONFIDENCE intervals ,GLOMERULONEPHRITIS ,HOSPITAL care ,HOSPITALS ,KIDNEYS ,KIDNEY diseases ,LABORATORIES ,LONGITUDINAL method ,SCIENTIFIC observation ,PEDIATRICS ,SKIN diseases ,STREPTOCOCCAL diseases ,COMORBIDITY ,DISEASE incidence ,RETROSPECTIVE studies ,ACUTE diseases ,ELECTRONIC health records ,DESCRIPTIVE statistics ,SYMPTOMS - Abstract
Objective: To determine the incidence, clinical presentation and progress of acute post‐streptococcal glomerulonephritis in Central Australia. Design: Retrospective observational analysis. Setting: Paediatric inpatient admission at Alice Springs Hospital. Participants: Patients admitted to Alice Springs Hospital under 14 years of age meeting diagnostic criteria for acute post‐streptococcal glomerulonephritis between January 2010 and December 2014. Main Outcome Measures: Incidence of acute post‐streptococcal glomerulonephritis in central Australia. Biochemical abnormalities associated with acute post‐streptococcal glomerulonephritis. Co‐occuring conditions. Results: Sixty‐nine out of the 174 cases reviewed were identified as having either acute post‐streptococcal glomerulonephritis (63) or probable acute post‐streptococcal glomerulonephritis (6). We calculate the incidence of APSGN admission to be higher than previously reported and the highest reported incidence globally in children. Clinical evidence of skin infection was frequently documented. Co‐occurring infections were common, including scabies/head lice, urinary tract infection and pneumonia. Fifty‐three patients showed biochemical evidence of acute kidney injury. Conclusions: Aboriginal children in Central Australia have the highest incidence of acute post‐streptococcal glomerulonephritis reported worldwide. Urgent action is required to improve housing and reduce overcrowding in Central Australian towns and communities to reduce the burden of disease of skin infection and Group A Streptococcus related diseases. Without effective change in living conditions, it is unlikely that there will be a significant change in the morbidity related to these conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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12. Geographic variation in cardiometabolic risk distribution: A cross-sectional study of 256,525 adult residents in the Illawarra-Shoalhaven region of the NSW, Australia.
- Author
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Toms, Renin, Mayne, Darren J., Feng, Xiaoqi, and Bonney, Andrew
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DISEASE risk factors ,CROSS-sectional method ,BODY mass index ,GLOMERULAR filtration rate ,BLOOD sugar - Abstract
Introduction: Metabolic risk factors for cardiovascular disease (CVD) warrant significant public health concern globally. This study aims to utilise the regional database of a major laboratory network to describe the geographic distribution pattern of eight different cardiometabolic risk factors (CMRFs), which in turn can potentially generate hypotheses for future research into locality specific preventive approaches. Method: A cross-sectional design utilising de-identified laboratory data on eight CMRFs including fasting blood sugar level (FBSL); glycated haemoglobin (HbA1c); total cholesterol (TC); high density lipoprotein (HDL); albumin creatinine ratio (ACR); estimated glomerular filtration rate (eGFR); body mass index (BMI); and diabetes mellitus (DM) status was used to undertake descriptive and spatial analyses. CMRF test results were dichotomised into ‘higher risk’ and ‘lower risk’ values based on existing risk definitions. Australian Census Statistical Area Level 1 (SA1) were used as the geographic units of analysis, and an Empirical Bayes (EB) approach was used to smooth rates at SA1 level. Choropleth maps demonstrating the distribution of CMRFs rates at SA1 level were produced. Spatial clustering of CMRFs was assessed using Global Moran’s I test and Local Indicators of Spatial Autocorrelation (LISA). Results: A total of 1,132,016 test data derived from 256,525 individuals revealed significant geographic variation in the distribution of ‘higher risk' CMRF findings. The populated eastern seaboard of the study region demonstrated the highest rates of CMRFs. Global Moran’s I values were significant and positive at SA1 level for all CMRFs. The highest spatial autocorrelation strength was found among obesity rates (0.328), and the lowest for albuminuria (0.028). LISA tests identified significant High-High (HH) and Low-Low (LL) spatial clusters of CMRFs, with LL predominantly in the less populated northern, central and southern regions of the study area. Conclusion: The study describes a range of CMRFs with different distributions in the study region. The results allow generation of hypotheses to test in future research concerning location specific population health approaches. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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13. Development and validation of a novel high performance liquid chromatography-coupled with Corona charged aerosol detector method for quantification of glucosamine in dietary supplements.
- Author
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Asthana, Chhavi, Peterson, Gregory M., Shastri, Madhur, and Patel, Rahul P.
- Subjects
HYDROPHILIC interaction liquid chromatography ,DIETARY supplements ,MOBILE phase (Chromatography) ,CLINICAL trial registries ,AMMONIUM acetate - Abstract
Introduction: Glucosamine dietary supplements are commonly used for the management of osteoarthritis (OA). However, clinical trials have reported varying outcomes with regard to joint function and disease progression. One of the possible reasons for variability in observed effects of glucosamine could be that, unlike prescription drugs, the quality of manufactured dietary supplements is not closely monitored in many countries. Therefore, there is the possibility that the actual amount of glucosamine present in a dietary supplement is different from that claimed on the label. The quality control of glucosamine supplements is further complicated by the unavailability of a simple and effective analytical method for the analysis of glucosamine. Therefore, the aim of this study was to develop a simple analytical method that could be easily adapted by the pharmaceutical industry for routine analysis of glucosamine. Aims: To develop a novel high-performance liquid chromatography (HPLC) method for the quantification of glucosamine, and determine the amount of glucosamine present in a sample of dietary supplements commercially available in Australia and India. Methods: Chromatographic separation of glucosamine was achieved using a zwitter-ionic hydrophilic interaction liquid chromatography column with a mobile phase consisting of 60% acetonitrile and 40% of 85 mM ammonium acetate, at a flow rate of 0.3 mL/min and column temperature 40°C. The developed method was validated for intra- and inter-day linearity, accuracy, precision, and reproducibility. The newly-developed method was subsequently used to analyse 12 glucosamine supplements. Results: The developed method was selective for glucosamine, which had a retention time of 5.9 min. The standard curve was linear with a correlation coefficient (r
2 ) exceeding 0.99, over the range of 10–200 μg/mL for glucosamine. The relative standard deviations for intra- and inter-day accuracy, precision and reproducibility were all less than 4%. The amount of glucosamine determined in six Australian and six Indian glucosamine supplements ranged between 98.7–101.7% and 85.9–101.8% of the labelled values, respectively. Discussion: Unlike previous HPLC methods, this newly-developed HPLC technique does not require pre-derivatisation and can separate glucosamine from both hydrochloride and sulphate salts, and from other amino sugars, such as chondroitin sulphate present in dietary supplements. This simple and effective technique can be employed by analytical laboratories for the quality control of glucosamine dietary supplements. Conclusion: The current study has developed a new analytical technique using HPLC-Corona CAD, which can analyse underivatised glucosamine hydrochloride and sulphate within 6 minutes. Using the novel assay, we confirmed that unlike the tested Australian dietary supplements, only half of the tested Indian products had a glucosamine content within ±10% of what was claimed on the label. [ABSTRACT FROM AUTHOR]- Published
- 2019
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14. Measuring wool cortisol and progesterone levels in breeding maiden Australian merino sheep (Ovis aries).
- Author
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Sawyer, Gregory, Webster, Danielle, and Narayan, Edward
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SHEEP ,MERINO sheep ,PARTURITION ,WOOL ,PROGESTERONE ,HYDROCORTISONE - Abstract
Hormonal assessment tools are important for determining the reproductive success of production animals. This study used non-invasive wool assessment to quantify changes in progesterone and cortisol levels in reproducing female merino sheep. Wool samples were collected from a group of n = 46 maiden merino ewes (22–25 months old), naturally joined under natural light conditions in southern New South Wales (NSW), Australia. Three shearing opportunities were conducted as part of standard on-farm management practices. The wool samples were collected at three different dates during 2017, January (prior to rams being put out with the mob and to provide a baseline level since previous shearing in May 2016), September (during very late stages of gestation–approximately 2 weeks prior to parturition) and December (ewes had given birth and ~2-month-old lambs were at foot). Analysis of cortisol and progesterone was conducted concurrently from the same sample of wool. The hormones in wool samples quantified using commercially available cortisol and progesterone enzyme-immunoassay kits. Wool cortisol concentrations increased significantly (p = 3.04E-14) from pre-joining in January (1.33±0.12 ng/g) to late gestation in September (3.59±0.12 ng/g). Concentration of wool cortisol post-lambing in December (3.27±0.14 ng/g) did not decline significantly (p = 0.124) after gestation however remained significantly higher (p = 3.82E-10) than pre-joining levels. Wool progesterone (PG) concentrations increased significantly (p = 1.83E-33) from pre-joining (0.04±0.005 ng/g) in January to late gestation in September (5.53±0.13 ng/g) with a significant (p = 5.44E-59) decline observed in December (0.05±0.003 ng/g) to post- pregnancy concentrations. No significant difference was shown between pre-joining and post lambing PG concentrations (p = 0.057). Our results showed that non-invasive assessment of hormones in Merino sheep wool reflected significant increase in both cortisol and progesterone guided by pregnancy. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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15. Caprine humoral response to Burkholderia pseudomallei antigens during acute melioidosis from aerosol exposure.
- Author
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Yi, Jinhee, Simpanya, Mukoma F., Settles, Erik W., Shannon, Austin B., Hernandez, Karen, Pristo, Lauren, Keener, Mitchell E., Hornstra, Heidie, Busch, Joseph D., Soffler, Carl, Brett, Paul J., Currie, Bart J., Bowen, Richard A., Tuanyok, Apichai, and Keim, Paul
- Subjects
MELIOIDOSIS ,HEAT shock proteins ,MOLECULAR chaperones ,BLOOD proteins ,BURKHOLDERIA pseudomallei ,HUMORAL immunity - Abstract
Burkholderia pseudomallei causes melioidosis, a common source of pneumonia and sepsis in Southeast Asia and Northern Australia that results in high mortality rates. A caprine melioidosis model of aerosol infection that leads to a systemic infection has the potential to characterize the humoral immune response. This could help identify immunogenic proteins for new diagnostics and vaccine candidates. Outbred goats may more accurately mimic human infection, in contrast to the inbred mouse models used to date. B. pseudomallei infection was delivered as an intratracheal aerosol. Antigenic protein profiling was generated from the infecting strain MSHR511. Humoral immune responses were analyzed by ELISA and western blot, and the antigenic proteins were identified by mass spectrometry. Throughout the course of the infection the assay results demonstrated a much greater humoral response with IgG antibodies, in both breadth and quantity, compared to IgM antibodies. Pre-infection sera showed multiple immunogenic proteins already reactive for IgG (7–20) and IgM (0–12) in most of the goats despite no previous exposure to B. pseudomallei. After infection, the number of IgG reactive proteins showed a marked increase as the disease progressed. Early stage infection (day 7) showed immune reaction to chaperone proteins (GroEL, EF-Tu, and DnaK). These three proteins were detected in all serum samples after infection, with GroEL immunogenically dominant. Seven common reactive antigens were selected for further analysis using ELISA. The heat shock protein GroEL1 elicited the strongest goat antibody immune response compared to the other six antigens. Most of the six antigens showed the peak IgM reactivity at day 14, whereas the IgG reactivity increased further as the disease progressed. An overall MSHR511 proteomic comparison between the goat model and human sera showed that many immune reactive proteins are common between humans and goats with melioidosis. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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16. Results of the first recorded evaluation of a national gestational diabetes mellitus register: Challenges in screening, registration, and follow-up for diabetes risk.
- Author
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Boyle, Douglas I. R., Versace, Vincent L., Dunbar, James A., Scheil, Wendy, Janus, Edward, Oats, Jeremy J. N., Skinner, Timothy, Shih, Sophy, O’Reilly, Sharleen, Sikaris, Ken, Kelsall, Liza, Phillips, Paddy A., Best, James D., and null, null
- Subjects
GESTATIONAL diabetes ,TYPE 2 diabetes risk factors ,TYPE 2 diabetes prevention ,DIAGNOSIS of diabetes ,WOMEN'S health ,PUBLIC health - Abstract
Objective: Gestational Diabetes Mellitus (GDM) increases the risk of type 2 diabetes. A register can be used to follow-up high risk women for early intervention to prevent progression to type 2 diabetes. We evaluate the performance of the world’s first national gestational diabetes register. Research design and methods: Observational study that used data linkage to merge: (1) pathology data from the Australian states of Victoria (VIC) and South Australia (SA); (2) birth records from the Consultative Council on Obstetric and Paediatric Mortality and Morbidity (CCOPMM, VIC) and the South Australian Perinatal Statistics Collection (SAPSC, SA); (3) GDM and type 2 diabetes register data from the National Gestational Diabetes Register (NGDR). All pregnancies registered on CCOPMM and SAPSC for 2012 and 2013 were included–other data back to 2008 were used to support the analyses. Rates of screening for GDM, rates of registration on the NGDR, and rates of follow-up laboratory screening for type 2 diabetes are reported. Results: Estimated GDM screening rates were 86% in SA and 97% in VIC. Rates of registration on the NGDR ranged from 73% in SA (2013) to 91% in VIC (2013). During the study period rates of screening at six weeks postpartum ranged from 43% in SA (2012) to 58% in VIC (2013). There was little evidence of recall letters resulting in screening 12 months follow-up. Conclusions: GDM Screening and NGDR registration was effective in Australia. Recall by mail-out to young mothers and their GP’s for type 2 diabetes follow-up testing proved ineffective. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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17. Archival Isolates Confirm a Single Topotype of West Nile Virus in Australia.
- Author
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Huang, Bixing, Prow, Natalie A, van den Hurk, Andrew F., Allcock, Richard J. N., Moore, Peter R., Doggett, Stephen L., and Warrilow, David
- Subjects
WEST Nile fever diagnosis ,TREATMENT of West Nile fever ,MOLECULAR clock ,WEST Nile virus ,PUBLIC health - Abstract
West Nile virus is globally wide-spread and causes significant disease in humans and animals. The evolution of West Nile virus Kunjin subtype in Australia (WNV
KUN ) was investigated using archival samples collected over a period of 50 years. Based on the pattern of fixed amino acid substitutions and time-stamped molecular clock analyses, a single long-term lineage (or topotype) was inferred. This implies that a bottleneck exists such that regional strains eventually die out and are replaced with strains from a single source. This was consistent with current hypotheses regarding the distribution of WNVKUN , whereby the virus is enzootic in northern Australia and is disseminated to southern states by water-birds or mosquitoes after flooding associated with above average rainfall. In addition, two previous amino acid changes associated with pathogenicity, an N-Y-S glycosylation motif in the envelope protein and a phenylalanine at amino acid 653 in the RNA polymerase, were both detected in all isolates collected since the 1980s. Changes primarily occurred due to stochastic drift. One fixed substitution each in NS3 and NS5, subtly changed the chemical environment of important functional groups, and may be involved in fine-tuning RNA synthesis. Understanding these evolutionary changes will help us to better understand events such as the emergence of the virulent strain in 2011. [ABSTRACT FROM AUTHOR]- Published
- 2016
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18. Model of care for the management of complex Type 2 diabetes managed in the community by primary care physicians with specialist support: an open controlled trial.
- Author
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Russell, A. W., Baxter, K. A., Askew, D. A., Tsai, J., Ware, R. S., and Jackson, C. L.
- Subjects
EVALUATION of medical care ,TYPE 2 diabetes treatment ,TYPE 2 diabetes complications ,BIOCHEMISTRY ,BLOOD pressure ,CLINICAL trials ,COMMUNITIES ,CONFIDENCE intervals ,DIABETES ,HEMOGLOBINS ,PATIENT aftercare ,MEDICINE ,MEDICAL specialties & specialists ,PHYSICIANS ,GENERAL practitioners ,PRIMARY health care ,COMORBIDITY ,DATA analysis ,BODY mass index ,ACQUISITION of data - Abstract
Aims To evaluate patient outcomes for a novel integrated primary/specialist model of community care for complex Type 2 diabetes mellitus management compared with outcomes for usual care at a tertiary hospital for diabetes outpatients. Methods This was a prospective open controlled trial performed in a primary and tertiary care setting in Australia. A total of 330 patients with Type 2 diabetes aged >18 years were allocated to an intervention ( n=185) or usual care group ( n=145). The intervention arm was a community-based model of care led by a general practitioner with advanced skills and an endocrinologist partnership. Usual care was provided via the hospital diabetes outpatient department. The primary end point was HbA
1c concentration at 12 months. Secondary end points included serum lipids and blood pressure. Results The mean change in HbA1c concentration in the intervention group was −9 mmol/mol (−0.8%) at 12 months and in the usual care group it was −2 mmol/mol (−0.2%) (95% CI −5,1). The percentage of patients in the intervention group achieving the HbA1c target of ≤53 mmol/mol (7%) increased from 21 to 42% ( P<0.001); for the usual care group there was a 1% increase to 39% of patients attaining this target ( P=0.99). Patients in the intervention group experienced significant improvements in blood pressure and total cholesterol compared with those in the usual care group. The percentage of patients achieving clinical targets was greater in the intervention group for the combined target of HbA1c concentration, blood pressure and LDL cholesterol. Conclusions A community-based, integrated model of complex diabetes care, delivered by general practitioners with advanced skills, produced clinical and process benefits compared with a tertiary diabetes outpatient clinic. [ABSTRACT FROM AUTHOR]- Published
- 2013
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19. Evidence for Instantaneous Oxygen-Limited Biodegradation of Petroleum Hydrocarbon Vapors in the Subsurface.
- Author
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Davis, G. B., Patterson, B. M., and Trefry, M. G.
- Subjects
PETROLEUM ,MINERAL oils ,HYDROCARBONS ,ORGANIC compounds ,FLUOROHYDROCARBONS ,UNDERGROUND areas ,BIODEGRADATION ,CHEMICAL decomposition ,BIOCHEMISTRY - Abstract
Petroleum hydrocarbon vapors biodegrade aerobically in the subsurface. Depth profiles of petroleum hydrocarbon vapor and oxygen concentrations from seven locations in sandy and clay soils across four states of Australia are summarized. The data are evaluated to support a simple model of biodegradation that can be used to assess hydrocarbon vapors migrating toward built environments. Multilevel samplers and probes that allow near-continuous monitoring of oxygen and total volatile organic compounds (VOCs) were used to determine concentration depth profiles and changes over time. Collation of all data across all sites showed distinct separation of oxygen from hydrocarbon vapors, and that most oxygen and hydrocarbon concentration profiles were linear or near linear with depth. The low detection limit on the oxygen probe data and because it is an in situ measurement strengthened the case that little or no overlapping of oxygen and hydrocarbon vapor concentration profiles occurred, and that indeed oxygen and hydrocarbon vapors were largely only coincident near the location where they both decreased to zero. First-order biodegradation rates determined from all depth profiles were generally lower than other published rates. With lower biodegradation rates, the overlapping of depth profiles might be expected, and yet such overlapping was not observed. A model of rapid (instantaneous) reaction of oxygen and hydrocarbon vapors compared to diffusive transport processes is shown to explain the important aspects of the 13 depth profiles. The model is simply based on the ratio of diffusion coefficients of oxygen and hydrocarbon vapors, the ratio of the maximum concentrations of oxygen and hydrocarbon vapors, the depth to the maximum hydrocarbon source concentration, and the stoichiometry coefficient. Whilst simple, the model offers the potential to incorporate aerobic biodegradation into an oxygen-limited flux-reduction approach for vapor intrusion assessments of petroleum hydrocarbon compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
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20. Habitat and Biodiversity of On-Farm Water Storages: A Case Study in Southeast Queensland, Australia.
- Author
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Markwell, Kim and Fellows, Christine
- Subjects
FARM ponds ,HABITATS ,BIODIVERSITY ,AQUATIC plants ,INVERTEBRATES ,AQUATIC organisms ,BIOCHEMISTRY - Abstract
On-farm water storages (locally known as farm dams or farm ponds) are an important part of many agricultural landscapes, as they provide a reliable source of water for irrigation and stock. Although these waterbodies are artificially constructed and morphologically simple, there is increasing interest in their potential role as habitat for native flora and fauna. In this article, we present results from a case study which examined the habitat characteristics (such as water physical and chemical parameters, benthic metabolism, and macrophyte cover) and the macrophyte and macroinvertebrate biodiversity of eight farm ponds on four properties in the Stanley Catchment, Southeast Queensland, Australia. Each landowner was interviewed to allow a comparison of the management of the ponds with measured habitat and biodiversity characteristics, and to understand landowners’ motivations in making farm pond management decisions. The physical and chemical water characteristics of the study ponds were comparable to the limited number of Australian farm ponds described in published literature. Littoral zones supported forty-five macroinvertebrate families, with most belonging to the orders Hemiptera, Coleoptera, Odonata, and Diptera. Invertebrate community composition was strongly influenced by littoral zone macrophyte structure, with significant differences between ponds with high macrophyte cover compared to those with bare littoral zones. The importance of littoral zone macrophytes was also suggested by a significant positive relationship between invertebrate taxonomic richness and macrophyte cover. The landowners in this study demonstrated sound ecological knowledge of their farm ponds, but many had not previously acknowledged them as having high habitat value for native flora and fauna. If managed for aquatic organisms as well as reliable water sources, these artificial habitats may help to maintain regional biodiversity, particularly given the large number of farm ponds across the landscape. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
21. Quercitol links the physiology, taxonomy and evolution of 279 eucalypt species.
- Author
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Merchant, Andrew, Ladiges, Pauline Y., and Adams, Mark A.
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EUCALYPTUS ,SPECIES diversity ,BIOCHEMISTRY ,POLYOLS ,TAXONOMY ,NUCLEOTIDE sequence - Abstract
Aim Increasing aridity over geological time-scales has driven a high degree of speciation within the Eucalyptus group in Australia. Isolation of gene pools by climatic and edaphic conditions and high rates of out-crossing have given rise to a large diversity of adaptive traits. Among these traits, adaptations of cellular biochemistry are likely to be significant in preserving cellular function during arid conditions. The aim of this study was to determine the quantitative and qualitative distribution of soluble carbohydrates and polyols in Eucalyptus. Location Australia. Methods We sampled 279 of the 700+ documented eucalypts (in the three genera comprising the eucalypts: Angophora Cav., Corymbia Hill & Johnson and Eucalyptus L’Hér.) and analysed leaf tissues for the occurrence of low-molecular-weight carbohydrates and polyols. Results We have uncovered a discrete pattern in concentration of quercitol (a cyclitol) that correlates strongly with the current taxonomic classification based on both morphology and DNA sequencing. We also uncovered a further and stronger correlation between the presence of quercitol in leaf tissues and a reduced growth (mallee) form. Main conclusions These findings, together with the chemical properties of quercitol, suggest that we have uncovered a chemical marker of structural adaptations to arid conditions, thus providing a putative, broad-scale functional link to adaptation to aridity. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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22. Plasma coagulation factor VII activity and its correlates in healthy men.
- Author
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Li, D., Turner, A., and Sinclair, A. J.
- Subjects
BLOOD coagulation ,MEN'S health ,AUSTRALIANS ,BODY mass index ,STEARIC acid ,FATTY acids ,PHOSPHOLIPIDS ,BIOCHEMISTRY ,HEALTH - Abstract
Objective:The aim of this study was to investigate the plasma coagulation factor VII activity and its correlates in healthy Australian men.Design:Cross-sectional study.Setting:Free living subjects.Subjects:A total of 139 healthy Australian males aged 20–55 y with widely varying intakes of individual fatty acids.Outcome measures:The concentration of phospholipid fatty acids and the parameters of biochemistry were analysed by standard methods. Citrated plasma factor VII activity was measured by using the ACL 200 system with commercially available kits.Results:In the stepwise multiple regression, controlled for age, body mass index and dietary groups, the two most important variables of factor VII activity were selected in the forward entry model with R
2 =0.474 and P<0.0001 from 19 independent variables, which were significantly correlated with plasma factor VII activity in age-adjusted bivariate analysis where significance was considered at P<0.01. Plasma factor VII activity was strongly negatively correlated with prothrombin time (PT) (Std. Coeff. −0.550), and significantly positively correlated with plasma phospholipid (PL) stearic acid (Std. Coeff. 0.285).Conclusions:Increased factor VII activity was associated with shortening of PT. All types of fatty-acid concentrations of PLs were significantly positively correlated with factor VII activity; however, stearic acid was more potent than other fatty acids in healthy Australian men.Sponsorship:Meat Research Corporation of Australia.European Journal of Clinical Nutrition (2005) 59, 1423–1428. doi:10.1038/sj.ejcn.1602257; published online 17 August 2005 [ABSTRACT FROM AUTHOR]- Published
- 2005
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23. Haematology and serum biochemistry of three Australian desert murids: the Plains rat ( Pseudomys australis), the Spinifex hopping-mouse ( Notomys alexis) and the Central rock-rat ( Zyzomys pedunculatus).
- Author
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Old, J. M., Connelly, L., Francis, J., Branch, K., Fry, G., and Deane, E. M.
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HEMATOLOGY ,SERUM ,MURIDAE ,BIOCHEMISTRY - Abstract
Haematological and serum biochemical data have been collected from a total of 19 captive-bred Australian native murids (Plains rat, Spinifex hopping-mouse and Central rock-rat). These animals were maintained in a captive population at Alice Springs Desert Park (NT, Australia) and are all central desert inhabitants of Australia. They are currently listed as common, threatened and critically endangered, respectively. Given the status and size of these animals, only small sample numbers and volumes were analysed. The study, however, provides some basic haematology and serum biochemistry information for these three species and will serve as an effective management tool for assessing and monitoring the health status of individuals, particularly those in captivity. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
24. Research: Aust J Chem
- Author
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Wentrup, Curt
- Published
- 2010
25. The solution structure and activity of caerin 1.1, an antimicrobial peptide from the Australian green tree frog, <em>Litoria splendida</em>.
- Author
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Wong, Herbert, Bowie, John H., and Carver, John A.
- Subjects
ANTIMICROBIAL peptides ,LITORIA ,HYLIDAE ,ANTI-infective agents ,BIOCHEMISTRY ,PEPTIDES - Abstract
Caerin 1.1 is one of the major antimicrobial peptides isolated from the skin of the Australian green tree frog, Litoria splendida. Two-dimensional
1 H-1 H and1 H-13 C NMR spectroscopy in trifluoroethanol/ H2 O (50:50, by vol.)have been used to assign the1 H and13 C-NMR spectra of this 25-amino-acid peptide. From an examination of these data, and using distance geometry and molecular dynamics calculations, the solution conformation of caerin 1.1 has been determined. The peptide adopts two well-defined helices from Leu2 to Lys11 and from Val17 to His24 separated by a region of less-defined helicity and greater flexibility. Overall, the peptide has a distinct amphipathic charge distribution. The solution structure of caerin 1.1 is compared with activity data against a variety of micro-organisms for the parent peptide and. some naturally occurring and synthetic variants of caerin 1.1. The structural and activity data are consistent with caerin 1.1 interacting with membranes in a similar manner to other antimicrobial peptides, i.e. via a carpet-like mechanism whereby the individual peptides aggregate in a helical manner and orient themselves parallel to the membrane in a sheet-like arrangement [Shai, Y. (1995) Trends Biosphere. Sci. 20, 460-464]. [ABSTRACT FROM AUTHOR]- Published
- 1997
- Full Text
- View/download PDF
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