1. Single-cell chromatin accessibility and transcriptomic characterization of Behcet's disease.
- Author
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Shi, Wen, Ye, Jinguo, Shi, Zhuoxing, Pan, Caineng, Zhang, Qikai, Lin, Yuheng, Liang, Dan, Liu, Yizhi, Lin, Xianchai, and Zheng, Yingfeng
- Subjects
BEHCET'S disease ,GENE expression ,TRANSCRIPTOMES ,IMMUNE response ,BLOOD testing ,GENE regulatory networks ,CHROMATIN ,EPIGENOMICS - Abstract
Behect's disease is a chronic vasculitis characterized by complex multi-organ immune aberrations. However, a comprehensive understanding of the gene-regulatory profile of peripheral autoimmunity and the diverse immune responses across distinct cell types in Behcet's disease (BD) is still lacking. Here, we present a multi-omic single-cell study of 424,817 cells in BD patients and non-BD individuals. This study maps chromatin accessibility and gene expression in the same biological samples, unraveling vast cellular heterogeneity. We identify widespread cell-type-specific, disease-associated active and pro-inflammatory immunity in both transcript and epigenomic aspects. Notably, integrative multi-omic analysis reveals putative TF regulators that might contribute to chromatin accessibility and gene expression in BD. Moreover, we predicted gene-regulatory networks within nominated TF activators, including AP-1, NF-kB, and ETS transcript factor families, which may regulate cellular interaction and govern inflammation. Our study illustrates the epigenetic and transcriptional landscape in BD peripheral blood and expands understanding of potential epigenomic immunopathology in this disease. Integrated single-cell RNA-seq and ATAC-seq analysis of peripheral blood samples from Behcet's disease patients or healthy controls expands our understanding of potential epigenomic immunopathology in this disease. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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