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Abstract Background The selection of individuals based on their predicted breeding values and mating of related individuals can increase the proportion of identical-by-descent alleles. In this context, the objectives of this study were to estimate inbreeding coefficients based on alternative metrics and data sources such as pedigree (FPED), hybrid genomic relationship matrix H (FH), and ROH of different length (FROH); and calculate Pearson correlations between the different metrics in a closed Nellore cattle population selected for body weight adjusted to 378 days of age (W378). In addition to total FROH (all classes) coefficients were also estimated based on the size class of the ROH segments: FROH1 (1–2 Mb), FROH2 (2–4 Mb), FROH3 (4–8 Mb), FROH4 (8–16 Mb), and FROH5 (> 16 Mb), and for each chromosome (FROH_CHR). Furthermore, we assessed the effect of each inbreeding metric on birth weight (BW), body weights adjusted to 210 (W210) and W378, scrotal circumference (SC), and residual feed intake (RFI). We also evaluated the chromosome-specific effects of inbreeding on growth traits. Results The correlation between FPED and FROH was 0.60 while between FH and FROH and FH and FPED were 0.69 and 0.61, respectively. The annual rate of inbreeding was 0.16% for FPED, 0.02% for FH, and 0.16% for FROH. A 1% increase in FROH5 resulted in a reduction of up to -1.327 ± 0.495 kg in W210 and W378. Four inbreeding coefficients (FPED, FH, FROH2, and FROH5) had a significant effect on W378, with reductions of up to -3.810 ± 1.753 kg per 1% increase in FROH2. There was an unfavorable effect of FPED on RFI (0.01 ± 0.0002 kg dry matter/day) and of FROH on SC (-0.056 ± 0.022 cm). The FROH_CHR coefficients calculated for BTA3, BTA5, and BTA8 significantly affected the growth traits. Conclusions Inbreeding depression was observed for all traits evaluated. However, these effects were greater for the criterion used for selection of the animals (i.e., W378). The increase in the genomic inbreeding was associated with a higher inbreeding depression on the traits evaluated when compared to pedigree-based inbreeding. Genomic information should be used as a tool during mating to optimize control of inbreeding and, consequently, minimize inbreeding depression in Nellore cattle.

Background: The selection of individuals based on their predicted breeding values and mating of related individuals can increase the proportion of identical-by-descent alleles. In this context, the objectives of this study were to estimate inbreeding coefficients based on alternative metrics and data sources such as pedigree (FPED), hybrid genomic relationship matrix H (FH), and ROH of different length (FROH); and calculate Pearson correlations between the different metrics in a closed Nellore cattle population selected for body weight adjusted to 378 days of age (W378). In addition to total FROH (all classes) coefficients were also estimated based on the size class of the ROH segments: FROH1 (1–2 Mb), FROH2 (2–4 Mb), FROH3 (4–8 Mb), FROH4 (8–16 Mb), and FROH5 (> 16 Mb), and for each chromosome (FROH_CHR). Furthermore, we assessed the effect of each inbreeding metric on birth weight (BW), body weights adjusted to 210 (W210) and W378, scrotal circumference (SC), and residual feed intake (RFI). We also evaluated the chromosome-specific effects of inbreeding on growth traits. Results: The correlation between FPED and FROH was 0.60 while between FH and FROH and FH and FPED were 0.69 and 0.61, respectively. The annual rate of inbreeding was 0.16% for FPED, 0.02% for FH, and 0.16% for FROH. A 1% increase in FROH5 resulted in a reduction of up to -1.327 ± 0.495 kg in W210 and W378. Four inbreeding coefficients (FPED, FH, FROH2, and FROH5) had a significant effect on W378, with reductions of up to -3.810 ± 1.753 kg per 1% increase in FROH2. There was an unfavorable effect of FPED on RFI (0.01 ± 0.0002 kg dry matter/day) and of FROH on SC (-0.056 ± 0.022 cm). The FROH_CHR coefficients calculated for BTA3, BTA5, and BTA8 significantly affected the growth traits. Conclusions: Inbreeding depression was observed for all traits evaluated. However, these effects were greater for the criterion used for selection of the animals (i.e., W378). The increase in the genomic inbreeding was associated with a higher inbreeding depression on the traits evaluated when compared to pedigree-based inbreeding. Genomic information should be used as a tool during mating to optimize control of inbreeding and, consequently, minimize inbreeding depression in Nellore cattle. [ABSTRACT FROM AUTHOR]

Prior studies in beef cattle have shown shifts in the reproductive microbiome prior to artificial insemination (AI), yet few have characterized both the reproductive microbiome and immune responses prior to AI, particularly in purebred Bos indicus. Therefore, the aim of this study was to characterize the circulating cytokines and the vaginal microbiome of Bos indicus females prior to fixed-time artificial insemination (FTAI). Bos indicus females (n = 79) on four separate ranch operations within a 20-mile radius in East Texas were subjected to the 7-day CO-Synch + controlled intervaginal drug-releasing (CIDR) protocol beginning on day (d)-9 with FTAI on d0. Blood samples were collected on d-9 (CIDR IN), d-2 (CIDR OUT), and d0 (AI DAY) for cytokine concentration analyses using the RayBiotech Quantibody Bovine Cytokine Array Q1 kit per the manufacturer's instructions. Sterile vaginal swabs were inserted past the vulva, rotated, and stored at -80°C for microbiome analysis. Bacterial community analyses targeted the V4 hypervariable region of the 16S rRNA gene. Pregnancy status was determined by transrectal ultrasonography approximately 60 days after FTAI for resulting open females (n = 45) and pregnant females (n = 34). Regardless of pregnancy status, the vaginal relative abundance of Firmicutes differed between CIDR IN, CIDR OUT, and AI DAY (63.74% vs. 28.31% vs. 60.86% ± 3.66%, respectively; P < 0.01). Genera with phylum Firmicutes including Ruminococcus, Clostridium, Blautia, Butyrvibrio, and Mogibacterium followed a similar trend (P < 0.05). Butyrvibrio tended to have greater relative abundance in the vaginal samples of Cows than Heifers (4.17% ± 0.75% vs. 3.26% ± 0.77%;P=0.07). Concentrations of the interferon (IFN)g (2005.98 ± 471.94 pg/mL vs. 1185.40 ± 482.65 pg/mL; P < 0.01), interleukin (IL)1F5 (153.89 ± 141.07 pg/mL vs. 627.30 ± 149.28 pg/mL; P < 0.01), and interferon gamma-induced protein (IP)10 (9363.26 ± 2929.83 pg/mL vs. 5905.53 ± 2983.60 pg/mL; P = 0.05) were greater in Cows than Heifers. There was a parity-by-status interaction for IP10, with Open Cows having the greatest concentration compared all other groups (P < 0.05). These results indicate differences in circulating cytokines and shifts in the vaginal microbiome for in Bos indicus cattle prior to FTAI. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the reproductive performance of Nellore suckled cows inseminated 55 (n = 304) or 65 (n = 296) h after progesterone (P4) removal in a 7-d protocol. The protocol consisted of the insertion of a device with 2 g of P4 and 2 mg of estradiol benzoate on d 0, with the device remaining in the cows for 7 d. Cows in the 55-h treatment had the P4 device removed in the morning, while cows in the 65-h treatment had the P4 device removed in the afternoon. At P4 removal, cows received intramuscularly 300 IU of eCG, 0.6 mg of estradiol cypionate and 0.52 mg cloprostenol sodium. Artificial insemination was performed according to treatments (55 vs. 65 h after P4 removal). The results of the study showed that the estrus detection rate (69% vs 65%) and pregnancy per AI (P/AI; 49% vs 49%) did no differ in cows inseminated 55 or 65 h after P4 removal, respectively. Furthermore, ovulation rate, the diameter of the largest follicle at the time of AI, and P4 concentration after AI were not affected by treatments. The probability of P/AI was not affected by parity, BCS, age, diameter of largest follicle at AI, days postpartum, BW and time to AI. This study suggests that performing AI from 55 to 65 h after the P4 removal in the 7-d-P4 protocol did not affect the reproductive performance in Nellore cows, and opens the possibility for producers to take more time to perform AI of cows in the field without affecting P/AI. [ABSTRACT FROM AUTHOR]

In Mexico, the genetic evaluations in Zebu breeds began in 2011 and there are no studies about the genetic progress achieved. Thus, this research aimed to quantify and analyse the genetic progress for growth traits in the Mexican Zebu beef cattle populations Nellore, Sardo Negro, Gyr, Indubrasil, and Guzerat. The genetic trends were obtained through weighted regression (by the number of animals) of estimated breeding values for direct birth weight, direct and maternal weaning weight, yearling weight, and weight at 540 days of age, on the year of birth. Genetic trends were also estimated by the four selection paths, groups of herds, and weighted averages of the sires' breeding values. The results showed genetic gain as expected of genetic improvement. Nellore presented the highest positive gains for all the traits, and Gyr had the smallest gains among the breeds. Guzerat showed contrary trends for weights until weaning, and had more favourable trends for weights after weaning than the other breeds. The genetic gains obtained for the growth traits reflected the strong influence of the selection made via the maternal paths. The results between weighted and unweighted average breeding values indicate no effective strategy for disseminating genetic material with high breeding values. The genetic gains obtained in the whole populations were due to the main groups of herds. Thus, to achieve further genetic progress, it is necessary to design a cooperative breeding program with a strategy for disseminating that genetic material.Highlights The evaluated populations are developed in the context of tropical livestock, with specific selection criteria and objectives. Genetic trends assess the direction and magnitude of genetic change. The results in the genetic trends show the consequences of the genetic improvement schemes carried out by the breeders. For breeders, it is important to evaluate and monitor genetic improvement schemes, and where appropriate, adjust, or redefine selection criteria and objectives.

Effects of mechanical processing (MP) of corn silage and its inclusion in feedlot diets on carcass and meat quality traits of Nellore (Bos indicus) were analyzed. Seventy-two bulls aged approximately 18 months and with an initial average body weight of 392.8 ± 22.3 kg were used. The experimental design was a 2 × 2 factorial arrangement, considering the concentrate–roughage (C:R) ratio (40:60 or 20:80), MP of silage and their interactions. After slaughter, hot carcass weight (HCW), pH, temperature, backfat thickness (BFT), and ribeye area (REA), yields of meat cuts (tenderloin, striploin, ribeye steak, neck steak, and sirloin cap), meat quality traits and economic analysis were evaluated. A lower final pH was found in the carcasses of animals consuming diets containing MP versus unprocessed silage (pH = 5.81 versus 5.93). Carcass variables (HCW, BFT, and REA) and meat cut yields were not affected by treatments. The C:R 20:80 increased the intramuscular fat (IMF) content by approximately 1%, without affecting moisture, ash, and protein contents. Meat/fat color (L*, a* and b*) and Warner–Bratzler shear force (WBSF) were similar among treatments. The results indicated that the MP of corn silage in finishing diets can provide better carcass pH results in Nellore bulls, without negatively influencing carcass weight, fatness, and meat tenderness (WBSF). The IMF content of meat was slightly improved using a C:R 20:80 and lower total costs per arroba produced (3.5%), daily costs per animal/day (4.2%), and cost per ton of feeds (5.15%) were found with MP silage. [ABSTRACT FROM AUTHOR]

In intensive beef cattle production systems, silage, corn, soy bean, and their coproducts are commonly used as feed. However, these ingredients are highly susceptible to contamination by fungi and mycotoxins, which may lead to immunological challenges and reduce animal production. The aim of the present study was to evaluate the effects of mycotoxin contamination of diet on intake, digestibility, and performance of heifers. Twenty non-pregnant (Nellore) heifers (age, >18 months; initial body weight, 348±30 kg) were used and randomly distributed in two treatments: (1) control (non-contaminated diet) and (2) zearalenone-contaminated diet (300 ppb). The diet comprised 70% corn silage and 30% concentrate. Individual dry matter intake and digestibility were estimated using external and internal markers. Heifer body weight was evaluated every week without fasting to calculate performance. The experimental design was completely randomized. Each animal was considered one experimental unit. Assumptions were tested for variance analyses (error normality, independence of errors, and homogeneity of variances) (p

Pregnancy loss (PL) has important impacts on the profitability of livestock production systems, although it is not widely reported, particularly in Bos indicus cattle. The present study retrospectively evaluated PL after timed-artificial insemination (TAI) in Bos indicus (Nelore) beef cows corresponding to several factors, such as parity, body condition score (BCS), presence of corpus luteum (CL) at the beginning of TAI protocols, expression of estrus, and hormonal manipulations during the TAI protocol. Data from two experiments performed during three breeding seasons (BS) were reanalyzed. Both experiments evaluated adding GnRH treatment at TAI in a 7-d estradiol (E2) plus progesterone (P4)-based protocol, with intravaginal P4 implant removal on Day 7 combined with treatment with 0.5 or 1.0 mg E2 cypionate and 300 IU eCG, and TAI on Day 9. In addition, during BS 2 and 3 (Exp 2), cows were randomized to receive or not a PGF treatment on Day 0 (beginning of the TAI protocol). In all BS, presence of CL and BCS were evaluated at the beginning of TAI protocols, follicle size and expression of estrus were evaluated at TAI. The PL was assessed between the first pregnancy diagnosis (∼35d) and parturition. There were no effects of hormonal manipulations within TAI protocols of different BS on PL. There was no interaction between GnRH treatment at TAI and the other variables within BS, and there was no main effect of GnRH treatment on PL (without = 10.1% [102/1007] vs. with = 10.4% [114/1100]). The addition of PGF on Day 0 had no effect on PL (11.5% [102/886] vs. 10.5% [89/850]), as well as EC dose to induce final ovulation (10.8% [89/827] vs. 11.2% [102/909] for 0.5 and 1.0 mg, respectively). Primiparous had greater PL than multiparous cows (14.0% [77/550] vs. 8.9% [139/1557]), and cows not expressing estrus near TAI had greater PL than those expressing estrus (13.5% [57/422] vs. 9.7% [156/1617]). There was no interaction between follicle size at TAI and GnRH treatment on PL. However, probability of PL decreased linearly as follicle size at TAI increased. There were no effects of service number (first TAI or resynchronization), BCS, or presence of CL on D0 on PL. In addition, PL was not affected by sire within any of the BS. In conclusion, some factors that are known to impact pregnancy per AI also influenced PL, such as parity and expression of estrus, although, other aspects such as BCS, number of services, and presence of CL on D0 did not affect PL. Moreover, commonly implemented treatments to increase fertility (e.g., PGF on Day 0 and increasing EC dose to 1.0 mg) did not affect PL. Finally, the GnRH treatment at TAI had no effect on PL and did not interact with any of the variables, an important result, since GnRH at TAI also increases fertility in Bos indicus beef cows. • Primiparous and cows not expressing estrus by the end of timed-AI protocols had greater pregnancy loss. • Presence of corpus luteum and body condition score did not influence pregnancy loss in beef cows. • The GnRH treatment at the time of AI did not increase pregnancy loss in beef cows submitted to E2 plus P4-based protocols. [ABSTRACT FROM AUTHOR]

In intensive beef cattle production systems, silage, corn, soy bean, and their coproducts are commonly used as feed. However, these ingredients are highly susceptible to contamination by fungi and mycotoxins, which may lead to immunological challenges and reduce animal production. The aim of the present study was to evaluate the effects of mycotoxin contamination of diet on intake, digestibility, and performance of heifers. Twenty non-pregnant (Nellore) heifers (age, >18 months; initial body weight, 348±30 kg) were used and randomly distributed in two treatments: (1) control (non-contaminated diet) and (2) zearalenone-contaminated diet (300 ppb). The diet comprised 70% corn silage and 30% concentrate. Individual dry matter intake and digestibility were estimated using external and internal markers. Heifer body weight was evaluated every week without fasting to calculate performance. The experimental design was completely randomized. Each animal was considered one experimental unit. Assumptions were tested for variance analyses (error normality, independence of errors, and homogeneity of variances) (p<0.05). There were no differences in dry matter intake (p=0.96) and digestibility (p=0.62). Performance (kg/day) did not vary as a function of zearalenone ingestion (p=0.68). Therefore, contamination of diet with 300 ppb zearalenone did not affect the intake, digestibility, and performance of feedlot-finished heifers. [ABSTRACT FROM AUTHOR]

In Mexico, the genetic evaluations in Zebu breeds began in 2011 and there are no studies about the genetic progress achieved. Thus, this research aimed to quantify and analyse the genetic progress for growth traits in the Mexican Zebu beef cattle populations Nellore, Sardo Negro, Gyr, Indubrasil, and Guzerat. The genetic trends were obtained through weighted regression (by the number of animals) of estimated breeding values for direct birth weight, direct and maternal weaning weight, yearling weight, and weight at 540 days of age, on the year of birth. Genetic trends were also estimated by the four selection paths, groups of herds, and weighted averages of the sires' breeding values. The results showed genetic gain as expected of genetic improvement. Nellore presented the highest positive gains for all the traits, and Gyr had the smallest gains among the breeds. Guzerat showed contrary trends for weights until weaning, and had more favourable trends for weights after weaning than the other breeds. The genetic gains obtained for the growth traits reflected the strong influence of the selection made via the maternal paths. The results between weighted and unweighted average breeding values indicate no effective strategy for disseminating genetic material with high breeding values. The genetic gains obtained in the whole populations were due to the main groups of herds. Thus, to achieve further genetic progress, it is necessary to design a cooperative breeding program with a strategy for disseminating that genetic material. The evaluated populations are developed in the context of tropical livestock, with specific selection criteria and objectives. Genetic trends assess the direction and magnitude of genetic change. The results in the genetic trends show the consequences of the genetic improvement schemes carried out by the breeders. For breeders, it is important to evaluate and monitor genetic improvement schemes, and where appropriate, adjust, or redefine selection criteria and objectives. [ABSTRACT FROM AUTHOR]

Pregnancy loss is recognized as a major reproductive challenge in beef cattle operations. Most pregnancy losses are associated with early embryonic mortality, but limited research evaluated pregnancy losses throughout the gestation period. Research is warranted to address this gap in knowledge, particularly fetal losses in Bos indicus-influenced females. This subspecies predominates in tropical regions of the planet, which contain more than 80% of the world’s cattle population and supply a major portion of the global demand for beef products. Our group recently evaluated pregnancy losses from d 30 of gestation to calving in 4,926 Nelore females assigned to an ovulation synchronization + fixed-time artificial insemination (FTAI) protocol. Pregnancy loss was greater (P < 0.01) from d 60 to 150 of gestation (10.2%) compared with d 30 to 60 of gestation (6.0%) and with d 150 of gestation to calving (7.4%) and differed (P = 0.04) between these latter two periods. Pregnancy loss from d 30 to 60 of gestation did not differ (P = 0.26) among cow parities (nulliparous, primiparous, and multiparous), whereas total pregnancy losses (d 30 to calving) were greater (P < 0.01) in precocious (28.4%) and conventional (27.1%) heifers compared with primiparous (16.4%) and multiparous (13.0%) cows. In a second experiment, pregnancy losses from fixed-time embryo transfer (FTET) to calving were evaluated in 4,366 FTET events using Nelore × Angus recipient heifers. Pregnancy losses were greater (P < 0.01) from FTET to d 32 of gestation compared with d 32 to 100 and with d 100 to calving (58.7, 39.5, and 36.7%, respectively), and did not differ (P = 0.56) between these latter periods. Recipients that lost the pregnancy from FTET to d 32 gained less (P < 0.01) body condition score after FTET compared with recipients that maintained the pregnancy. Pregnancy losses from d 32 to calving were greater (P < 0.01) in recipients reared in drylots and moved to pastures on d 32 compared with recipients reared on pasture. Collectively, these results provide novel information about pregnancy losses in Bos indicus females, with a substantial proportion of losses occurring as fetal mortality. [ABSTRACT FROM AUTHOR]

The aim of this study was to investigate the serum and meat metabolomic changes according to the genetic potential for muscularity of non-castrated Nellore males and its association with phenotypic traits. Forty-eight non-castrated Nellore males were separated into two groups based on their genetic potential for post-weaning muscularity: high (HM) and low (LM). Selection for muscularity did not cause noticeable differences in the traits evaluated during the finishing phase and after slaughter. However, several metabolites in meat and serum, have changed according to the muscularity group. HM animals presented an over-abundance of glycerol, glutamine, choline, methylhistidine, betaine, creatinine and methionine in serum, compared with their LM counterparts. Similarly, the meat samples of HM animals were rich in glucose-6-phosphate, lactate, pyruvate, creatinine, betaine, choline, glycerol and arginine relative to LM bulls. Inosine monophosphate was the only metabolite over-abundant in LM animals. In conclusion, the genetic potential for post-weaning muscularity did not affect performance during the finishing phase, carcass traits and meat quality. However, multivariate analysis shows that the genetic potential of muscularity can be correlated with serum lipid and protein metabolites, and with energy metabolism in meat, providing a footprint of cattle muscularity metabolism. [ABSTRACT FROM AUTHOR]

Context: A frame score prediction equation developed specifically for Nellore cattle could be an auxiliary tool to improve mating decisions on the basis of feed resources and production-system objectives. Aims: Estimate genetic parameters for frame by using a prediction equation developed for Nellore cattle and genetic associations between frame score (FRAME) and growth-, reproductive-, carcass- and feed efficiency-related traits, and five bioeconomic indexes. Methods: Birth weight (BW), adjusted weight at 120 (W120), 210 (W210) and 450 (W450) days of age, adult weight (AW), age at first calving (AFC), probability of precocious calving (PPC30), stayability (STAY), accumulated cow productivity (ACP), adjusted scrotal circumference at 365 (SC365) and 450 (SC450) days of age, rib eye area (REA), subcutaneous backfat thickness (BFT), rump fat thickness (RFT), intramuscular fat percentage (IMF), residual feed intake (RFI) and dry-matter intake (DMI) were included in the analyses. Frame score was calculated using the multiple linear regression (MLR) prediction method. The estimation of genetic parameters was performed using a linear animal model, except for PPC30 and STAY, which were estimated through a threshold animal model. The correlated response in FRAME considering selection for growth-, reproductive-, carcass- and feed efficiency-indicator traits were obtained in the context of single-trait selection and a multiple-trait context. Key results: Heritability estimated for FRAME was moderate (0.30 ± 0.09). Frame score showed moderate genetic correlations with growth traits, BW (0.51 ± 0.08), W120 (0.41 ± 0.07), W210 (0.35 ± 0.07) and W450 (0.29 ± 0.08). The genetic correlation estimates between FRAME and RFT was high (−0.84 ± 0.02), but low with ACP (0.25 ± 0.08) and RFI (0.10 ± 0.13). In the single-trait and multi-trait contexts, there was a lower correlated gain for FRAME when the selection was applied for traits commonly measured in beef cattle breeding programs. Conclusion: Selection to increase growth traits would lead to an increase in frame size and herd nutritional requirements, and it would reduce the carcass fatness level and early heifer sexual precocity. FRAME could be an alternative trait to monitor calf birth weight. Implications: Selection for FRAME is feasible, and the most suitable frame score value depends on the production system objectives and feed resources. The specific frame score prediction equation developed for Nellore cattle could be an auxiliary tool to improve mating decisions based on feed resources and production-system objectives. The results support the concept that under unrestrictive nutritional management conditions, a favourable relationship between frame score and beef production is expected; nevertheless, under irregular feed supply, range conditions and cow–calf systems, it is important to control the frame size due to potential genetic antagonism between fertility and reproductive traits with frame score. [ABSTRACT FROM AUTHOR]

Context: Beef cattle feed efficiency is challenged in northern Australian production systems due to the limited dietary protein, leading to changes in rumen bacterial populations and fermentation outcomes. Aims: Two types of diets with different dietary protein contents were used to evaluate changes in rumen bacterial composition and diversity, aiming to correlate rumen bacterial populations with feed and rumen efficiency parameters. Methods: In total, 90 Brahman steers (341 ± 45 kg BW) were selected for this trial, but rumen fluid was collected from 85 Brahman steers, at 0 and 4 h after feeding, during a feed-efficiency trial. The steers were fed with a low-protein diet, including 70% rumen-degradable protein and 8.8% crude protein (CP) for 60 days, followed by a high-protein diet for the same period (13.5% CP). Liveweight and dry-matter intake measurements, as well as urine, faeces and rumen fluid samples, were collected to determine feed and rumen efficiency, and ruminal bacteria composition. Steers were clustered into groups using principal component analysis and Ward's hierarchical method, and differences in feed-efficiency parameters among clusters were compared. Key results: Rumen bacterial composition differed between diets (P < 0.01) and diversity changes were more related to bacterial richness (P < 0.01). In a low-protein diet, there were four distinct clusters of steers, on the basis of rumen bacteria, in which the most efficient steers, with a better residual feed intake (P = 0.06) and lower rumen ammonia concentration (P < 0.01) before feeding, had the highest relative abundance of Prevotella (P < 0.01). While in a high-protein diet, no differences were observed on feed or rumen fermentation parameters among steer clusters. Conclusion: In a low-protein diet, rumen bacterial shifting might contribute to upregulate nitrogen recycling, favouring feed efficiency. Implications: Identifying ruminal bacterial populations involved in nitrogen recycling upregulation might be useful to select the most efficient cattle fed low-protein diets. Steers on a low-protein diet showed bacterial modification correlated to feed efficiency, whereas bacterial growth in the most efficient steers relied on the animal's capacity to recycle nitrogen as a response of low dietary ammonia content. These outcomes may facilitate the selection of highly feed efficient cattle fed a low-protein diet. [ABSTRACT FROM AUTHOR]

Context: Poor nutrition of late-pregnant cows is highly prevalent in the dry tropics and associated with high levels of calf mortality. Aims: It was hypothesised that supplementation with protein to prepartum cows would restore the normal decline in progesterone prepartum and increase the transfer of passive immunity to calves, with this being further enhanced by inclusion of yeast fermentation products. Methods: In total, 84 heifers and 45 cows were selected for a completely randomised block design, with the following three dietary treatments: unsupplemented, receiving ad libitum low-protein hay only; hay supplemented with 1 kg/day of protein; and supplementation with both protein and 14 g/day of a Saccharomyces cerevisiae fermentation product. Supplementation occurred for an average of 14 days before calving. Cow plasma samples in the week before parturition, and the first plasma sample after parturition, were analysed for progesterone and metabolites. Newborn calves were weighed and blood-sampled three times per week during the first 2 weeks after birth. The first two calf plasma samples were analysed for total protein, albumin, and globulin concentrations. Data were analysed using a mixed-effects model and the decline of progesterone concentration over time was modelled using a non-linear segmented model. Key results: Prepartum supplementation reduced cow liveweight loss, increased glucose, reduced fat mobilisation metabolites and tended to increase average daily weight gain of calves. Including yeast fermentation products in the supplement tended to increase the transfer of passive immunity to calves. Supplementation decreased plasma progesterone before parturition and including yeast fermentation products further advanced the initiation of progesterone decline. Conclusion: Protein supplementation of protein-deficient beef cows during late pregnancy helps restore the normal decrease in progesterone before parturition. Implications: This study identified a plausible hormonal mechanism explaining how poor nutrition around birth can increase calf loss, opening new possibilities for short-term diet management strategies to reduce calf mortality and improve calf health. Environmental stress and poor nutrition of pregnant cows are main factors responsible for high mortality of calves. The mechanism explaining why have not been described and most effort has been applied to increase body condition of the cow around calving, which is frequently not achievable in the dry tropics. This study identified a hormonal mechanism explaining how improving diet quality may increase milk delivery to neonates, opening new possibilities for short-term strategies to reduce calf mortality and improve calf health. [ABSTRACT FROM AUTHOR]

Objective: The aim of this study was to estimate genetic parameters for 305-day cumulative milk yield and components, growth, and reproductive traits in Guzerá cattle. Methods: The evaluated traits were 305-day first-lactation cumulative yields (kg) of milk (MY305), fat (FY305), protein (PY305), lactose (LY305), and total solids (SY305); age at first calving (AFC) in days; adjusted scrotal perimeter (cm) at the ages of 365 (SP365) and 450 (SP450) days; and adjusted body weight (kg) at the ages of 210 (W210), 365 (W365), and 450 (W450) days. The (co)variance components were estimated using the restricted maximum likelihood method for single-trait, bi-trait and tri-trait analyses. Contemporary groups and additive genetic effects were included in the general mixed model. Maternal genetic and permanent environmental effects were also included for W210. Results: The direct heritability estimates ranged from 0.16 (W210) to 0.32 (MY305). The maternal heritability estimate for W210 was 0.03. Genetic correlation estimates among milk production traits and growth traits ranged from 0.92 to 0.99 and from 0.92 to 0.99, respectively. For milk production and growth traits, the genetic correlations ranged from 0.33 to 0.56. The genetic correlations among AFC and all other traits were negative (–0.43 to –0.27). Scrotal perimeter traits and body weights showed genetic correlations ranging from 0.41 to 0.46, and scrotal perimeter and milk production traits showed genetic correlations ranging from 0.11 to 0.30. The phenotypic correlations were similar in direction (same sign) and lower than the corresponding genetic correlations. Conclusion: These results suggest the viability and potential of joint selection for dairy and beef traits in Guzerá cattle, taking into account reproductive traits. [ABSTRACT FROM AUTHOR]

Background: The impact of extreme changes in weather patterns on the economy and human welfare is one of the biggest challenges our civilization faces. From anthropogenic contributions to climate change, reducing the impact of farming activities is a priority since it is responsible for up to 18% of global greenhouse gas emissions. To this end, we tested whether ruminal and stool microbiome components could be used as biomarkers for methane emission and feed efficiency in bovine by studying 52 Brazilian Nelore bulls belonging to two feed intervention treatment groups, that is, conventional and by-product-based diets. Results: We identified a total of 5,693 amplicon sequence variants (ASVs) in the Nelore bulls' microbiomes. A Differential abundance analysis with the ANCOM approach identified 30 bacterial and 15 archaeal ASVs as differentially abundant (DA) among treatment groups. An association analysis using Maaslin2 software and a linear mixed model indicated that bacterial ASVs are linked to the host's residual methane emission (RCH4) and residual feed intake (RFI) phenotype variation, suggesting their potential as targets for interventions or biomarkers. Conclusion: The feed composition induced significant differences in both abundance and richness of ruminal and stool microbial populations in ruminants of the Nelore breed. The industrial by-product-based dietary treatment applied to our experimental groups influenced the microbiome diversity of bacteria and archaea but not of protozoa. ASVs were associated with RCH4 emission and RFI in ruminal and stool microbiomes. While ruminal ASVs were expected to influence CH4 emission and RFI, the relationship of stool taxa, such as Alistipes and Rikenellaceae (gut group RC9), with these traits was not reported before and might be associated with host health due to their link to anti-inflammatory compounds. Overall, the ASVs associated here have the potential to be used as biomarkers for these complex phenotypes. [ABSTRACT FROM AUTHOR]

We aimed to compare the effects of use of 1 or 2 mg estradiol benzoate (EB) associated with an intravaginal progesterone (P4) device for resynchronization of ovulation 14 days after timed-AI (TAI) in suckled beef cows. Nelore cows were submitted to a TAI (D0) and on D14, received an intravaginal P4 device and were randomly assigned to EB-1 group [n = 516] or EB-2 group [n = 510], which that received 1 or 2 mg EB, respectively. Also, cows had the ovaries scanned by ultrasound to detect an active CL on D14. On D22, devices were removed and structural luteolysis was detected by color-Doppler ultrasonography. In cows which underwent luteolysis, the resynchronization protocol was continued and they were submitted to second TAI on D24. Pregnancy diagnosis was performed 30–35 days after first or second TAI. A subgroup [n = 18–19/group] was submitted to daily ovarian ultrasound scanning from D14 to D22. Proportion of cows with an active CL on D14 did not differ (P > 0.1) between EB-1 and EB-2 groups. The proportion of cows with an active CL on D22 and pregnancy per AI (P/AI) at first TAI were greater (P ≤ 0.05) in EB-1 (55% and 51%) than in EB-2 group (48% and 42%). The P/AI at second TAI did not differ (P > 0.1) between EB-1 (47% [106/227]) and EB-2 group (42% [110/259]). Cumulative pregnancy rate was greater in EB-1 (73% [370/508]) than in EB-2 group (64% [322/502]). No difference (P > 0.1) was observed in the proportion of non-pregnant cows with a synchronized follicular wave emergence between EB-1 and EB-2 groups. In conclusion, treatment with either 1 or 2 mg EB associated with an intravaginal P4 device at D14 after TAI are efficient to synchronize a new follicular wave emergence. The decreased P/AI from first TAI observed in the group of cows receiving 2 mg indicates that this dose is not recommended for use in resynchronization programs initiated 14 days after TAI. The use of 1 mg EB associated with a P4 device provides an elevated cumulative pregnancy rate after two TAIs with an interval of 24 days. • Treatment with 1 or 2 mg estradiol benzoate (EB) and a P4 device at 14 days after TAI are efficient to synchronize follicular wave emergence. • Pregnancy establishment is impaired by use of 2 mg EB for resynchronization at 14 days after TAI. • The use of 1 mg EB is safer and results in improved pregnancy rates in the resynchronized cows after two TAIs. • Cows with low BCS have reduced presence of CL at resynchronization and increased early pregnancy loss. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the progesterone (P4) release profile provided by four commercially available intravaginal P4 devices, as well as the effect of circulating P4 concentrations exclusively from these devices on the development of the dominant follicle (DF) in Nelore (Bos indicus) cows. Therefore, non-lactating multiparous Nelore cows were enrolled in an experimental design, over three replicates, starting on Day −9 with the insertion of a reused P4 device (2 g – original P4 load) for 7 d, followed by two treatments of cloprostenol sodium (PGF; 0.482 mg), 24 h apart, on Days −3 and −2. Just before device removal, on Day −2, a norgestomet ear implant was inserted and, 2 d later (Day 0), at the time of norgestomet withdrawal, cows were randomly assigned to receive one of the intravaginal devices: Primer (0.5 g); Prociclar (0.75 g); Sincrogest (1 g); or CIDR (1.9 g), and 2 mg of estradiol benzoate (EB) im. Blood samples were collected immediately before P4 device insertion, 12 h later and daily over 15 d (1 d after P4 device removal). Ultrasound examinations were performed on Days 0, 7, 8, 9, 10, 12, and 14 to evaluate ovarian dynamics. Results are presented as mean ± SEM and differences were considered when P ≤ 0.05. Overall, the devices resulted in distinct circulating P4 concentrations over 10 d, varying according to their initial P4 load and P4 impregnated surface area. Primer provided the lowest circulating P4 concentrations over time, whereas, CIDR had the greatest concentration. Sincrogest and Prociclar were similar, producing intermediary circulating P4. There was no effect of treatment on the DF diameter on any specific day, nor on follicular growth rate from Day 7–10. However, the Primer device resulted in a greater mean DF diameter over time. Additionally, greater circulating P4 concentrations, mainly during the first 3 d of device insertion, were associated with smaller DF diameters regardless of the treatment. In conclusion, results from this study provided a better understanding of the P4 profile of intravaginal P4 devices, as well as, their effect on DF development in Bos indicus cows. These data contribute to optimize the use of P4 devices in the reproductive management of beef cattle. • Commercial P4 intravaginal devices provided different P4 profiles in Nelore cows. • P4 release capacity is influenced by the device's surface area and initial P4 load. • Lower circulating P4 concentrations resulted in a larger DF. • Lower circulating P4 during DF growth is desirable for Bos indicus. [ABSTRACT FROM AUTHOR]

Context: The use of crosses between Bos taurus and Bos indicus has boosted cattle production in tropical areas of Brazil, improving carcass and meat standards. However, there is little information on Canchim animals crossed with Nellore. Additionally, freezing is a preservation method frequently used by consumers, which allows meat to be preserved for a prolonged period, but little is known regarding this effect in meat frozen for 60 days from crossbred animals. Aims: The present study sought to evaluate the carcass performance and characteristics, and the effects of freezing prior to ageing on the meat of animals from different genetic groups finished in a feedlot. Methods: A total of 26 male cattle were used, consisting of Angus × Nellore (AAN), Canchim × Nellore (CAN) and Nellore (NEL), finished in feedlot. The carcasses were evaluated after slaughter. The steaks (Longissimus thoracis) were submitted to freezing for 0, 30 and 60 days before ageing, and were then aged for 1, 7 and 14 days. Key results: Consumption and performance was greater for AAN and CAN animals. The AAN and CAN crossbred cattle presented higher final liveweight, hot carcass weight, dressing-out percentage and rib eye area. Freezing did not affect the meat luminosity, and it reduced the shear force and the purge at 14 days of ageing when frozen for 30 and 60 days. Conclusions: The crossbreed between Canchim × Nellore animals is an alternative for termination in a feedlot. Meats frozen before ageing were more tender. Implications: Crossbred animals have better carcass performance and characteristics and the pre-freezing process yielded more tender meat. The Canchim is an alternative for crossing with pure Bos indicus animals. The use of breed crosses is an alternative for increasing animal production. For this purpose, breeds such as the Aberdeen Angus are already widely used, while Canchim animals present themselves as a viable alternative. Crossbred animals have better carcass characteristics and initial freezing for more than 30 days resulted in more tender meats. [ABSTRACT FROM AUTHOR]

Context: Livestock feed costs have a higher impact on the profitability of beef production systems and are directly related to feed efficiency. However, these traits are hard and have high costs to measure, reducing the availability of phenotypic records and reliability of genetic evaluations. Thus, the use of genomic information can increase the robustness of genetic studies that address them. Aims: The aim of the present study was to estimate genetic parameters for feed efficiency, growth, reproductive and carcass traits in Nelore cattle and the correlated response among them, using genomic information. Methods: Residual feed intake (RFI), dry-matter intake, feed conversion ratio, feed efficiency (FE), residual average daily gain (RG), residual feed intake and average daily gain (RIG), birthweight, weight at 120, 240, 365 and 450 days of age, scrotal circumference at 365 and 450 days of age, rib-eye area, backfat thickness and rump fat thickness were evaluated. The genetic parameters were estimated using the single-step genomic best linear unbiased prediction approach. Key results: The FE-related traits showed low to moderate heritability ranging from 0.07 to 0.23. Feed efficiency-related traits showed low genetic correlations with reproductive (–0.24 to 0.27), carcass (–0.17 to 0.27) and growth (–0.19 to 0.24) traits, except for growth with dry-matter intake (0.32–0.56) and weight at 365 days of age with FE (–0.40). Conclusions: The selection to improve growth, reproductive and carcass traits would not change RFI, RG and RIG. The choice of the most adequate selection criterion depends on the production system, that is, RFI might be used for low-input beef cattle systems, and RIG would be used for more intensive and without-any-dietary-restrictions beef cattle systems. Implications: The estimates of heritability and genetic correlations suggest that genetic selection for feed efficiency using RFI, RG and RIG in Nellore cattle leads to higher genetic gain than does that using FE and feed conversion ratio without affecting other profitability traits. Although the economic and environmental importance of feed efficiency traits, the genetic selection has been little used as a selection criterion in zebu breeding programs. The inclusion of genomic information could improve the reliability of genetic parameters, which is fundamental for their adoption as a large-scale selection criterion. Traits such as residual feed intake, residual average daily gain and residual intake and average daily gain can be used for genetic selection for feed efficiency, without affecting other profitability traits. [ABSTRACT FROM AUTHOR]

Context: Nitrate salts can be utilised by the rumen bacteria as a nitrogen source. Nitrate salts can induce a methaemoglobinaemia in cattle if consumed in sufficient quantities. Methaemoglobinaemia is the principal factor that leads to the onset of clinical signs for nitrate toxicity in cattle. A methaemoglobin concentration ≥20% is considered unsafe for cattle. There are, however, limited studies on the longer-term effects of nitrate supplementation on methaemoglobin formation in Bos indicus steers consuming forage that is reflective of northern Australia's poor quality, native pasture in the dry season. Aims: We hypothesised that the Australian government's recommended daily dose of nitrate salts given to Bos indicus cattle would not cause a methaemoglobinaemia in the blood >20% throughout a 70 day treatment period. Methods: A 70 day study was conducted to determine the methaemoglobin, carboxyhaemoglobin, total haemoglobin, growth rate and forage intakes of cattle supplemented with a non-protein-nitrogen treatment containing nitrate (6.48 g NO3/kg dry matter intake (DMI) or no nitrate and consuming a chaffed Flinders grass hay (Iseilema spp.), a C4 species. The dose rate of nitrate was selected to match the Australian government guidelines. Ten 3-year-old fistulated Bos indicus steers (mean liveweight ± s.d., 400.7 ± 26.2 kg) were randomly allocated into two groups (n = 5). Blood samples were collected at 0, 2, 4 and 6 h after treatment with nitrate or no nitrate on days 10, 30, 50 and 70 to measure haemoglobin fractions in the blood. Key Results: Nitrate treatment caused the mean methaemoglobin (P < 0.001), peak methaemoglobin (P < 0.001) and carboxyhaemoglobin (P = 0.008) concentration to be greater in the blood of steers compared with steers given no nitrate. Nitrate treatment had no general effect on the total haemoglobin, DMI or bodyweight of steers. Conclusions: Bos indicus steers treated with 6.48 g NO3/kg DMI develop a methaemoglobinaemia that does not exceed 20% of total haemoglobin for 70 days. This data supports the Australian government's recommended feeding rate of nitrate to sedentary Bos indicus steers. Implications: The Australian government's method for feeding nitrate to cattle is safe under the conditions of this study. Within the conditions of the study, Bos indicus steers treated with nitrate develop a methaemoglobinaemia that does not exceed 20% of total haemoglobin for 70 days. Although the data in the current study supports the Australian government's recommended dose rate as safe for cattle the data represents Bos indicus steers in a sedentary state. Further research is required to validate the dose rate of nitrate for cattle in an active state. [ABSTRACT FROM AUTHOR]

Context: Transportation, a common practice in cattle production, activates the hypothalamo-pituitary-adrenal (HPA) axis, ultimately increasing glucocorticoids and altering the cellular immune system in cattle. Oxytocin attenuates the HPA axis in mammals. Intra-nasal oxytocin supplementation has been investigated in human and rodent models, revealing anxiolytic effects. The aim of this study was to assess the ability of exogenous oxytocin to mitigate stress and inflammatory responses in transported cattle. Aims: We hypothesised that Bos indicus cattle treated with intra-nasal oxytocin would demonstrate more stable cortisol and inflammatory responses when subjected to handling and 6 h of road transportation compared with cattle treated with intra-nasal saline. Methods: Thirty, Bos indicus steers were allocated to one of three treatments: (1) intra-nasal sterile saline and held in the yard for 6 h (S-NT; n = 10), (2) intra-nasal sterile saline and transported for 6 h (S-T; n = 10), and (3) intra-nasal oxytocin (0.3 IU/kg bodyweight) and transported for 6 h (OXT-T; n = 10). Blood was collected at 0, 6, 48, and 72 h and analysed for haematological parameters, cortisol, glucose and lactate. Key results: A treatment × time effect (P < 0.05) was detected for lymphocytes and basophils, such that oxytocin helped maintain baseline counts. A treatment × time effect was detected for neutrophils and eosinophils such that counts were greater and lesser, respectively, directly following transport (P < 0.01) for transported treatments. Total leukocyte counts were not different between treatments (P = 0.96). No differences were observed between treatments or over time for plasma cortisol concentration (P = 0.46). A treatment × time interaction (P < 0.03) was detected for bodyweight such that transportation, independent of intra-nasal treatment, resulted in increased weight loss compared with the non-transported treatment. Conclusion: Oxytocin altered circulating basophils in Bos indicus cattle exposed to short-duration transport. Although no effect on the HPA axis was detected via changes in cortisol concentration, road transport induced some signs of an acute inflammatory response directly following transportation. Implications: Providing exogenous oxytocin improved the maintenance and recovery of some cellular immune system parameters in Bos indicus steers subject to short duration transport and more research is needed to explicate a more comprehensive understanding of such effects. Transportation activates the stress axis in beef cattle and may compromise the immune system leading to increased morbidity. Oxytocin has been demonstrated to attenuate the stress axis in humans and rodents and may be useful in transported cattle to decrease the stress axis and thereby confer improved immune protection. Although the present study did not detect effects of oxytocin on the stress response via changes in cortisol concentration, providing exogenous oxytocin improved the recovery of some cellular immune system parameters in Bos indicus steers subject to short duration transport. Additional research is needed to explicate a more complete understanding of such effects. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the effect of parity order on milk yield (MY) and composition over time of grazing beef cows and to evaluate non-linear models to describe the lactation curve. Thirty-six pregnant Nellore cows (12 nulliparous, 2 years; 12 primiparous, 3 years; and 12 multiparous, 4–6 years) were included in the study. With calving day assigned as day 0, milking was performed using a milking machine to estimate MY on days 7, 14, 21, 42, 63, 91, 119, 154, and 203. Dummy variable analyses were applied to estimate its effects on MY, composition (kg and percentage), afternoon/morning, and afternoon/total proportions. Since multiparous cows had higher MY than nulliparous and primiparous cows, two different groups were used for lactation curve analysis: Mult (multiparous) and Null/Prim (nulliparous and primiparous). The MY estimated by the last edition of BR-Corte (Nutrient Requirements of Zebu and Crossbred Cattle) equation was compared with the observed values from this study. Five nonlinear models proposed by Wood (WD), Jenkins & Ferrell (JF), Wilmink (WK), Henriques (HR) and Cobby & Le Du (CL) were evaluated. Models were validated using an independent dataset of multiparous and primiparous cows. The estimates for parameters a, b, and c of the CL equation were compared between groups, and the BR-Corte equation used the model identity methodology. Nulliparous and primiparous cows displayed similar MY (P > 0.05); however, multiparous cows had an average MY that is 0.70 kg/day greater than that of nulliparous and primiparous cows (P < 0.05). Milk protein and total solids were higher for multiparous cows (P < 0.05). Effect of days in milking was found for milk fat, protein, and total solids (P < 0.05). The yield of all milk components was higher for multiparous cows than for nulliparous and primiparous cows. The afternoon/morning and afternoon/total proportions of milk production were not affected by parities and days in milking (P > 0.05), with an average of 0.76 and 0.42, respectively. The BR-Corte equation did not correctly estimate the MY (P < 0.05). The equations of WD, WK, and CL had the best estimate of MY for both Mult and Null/Prim datasets. The equations had a very similar Akaike's information criterion with correction and mean square error of prediction.

Context: Indicine breeds are the main source of beef products in tropical and subtropical regions. However, genetic improvement for carcass- and meat-quality traits in zebu cattle have been limited and genomics studies concerning structural variations that influence these traits are essential. Aim: The aim of this study was to perform a genome-wide association study between copy number variation regions (CNVRs) and carcass- and meat quality-traits in Nellore cattle. Methods: In total, 3794 animals, males and females included, were genotyped using a 777 962 single-nucleotide polymorphism platform of BovineHD BeadChip (777k; Illumina Inc.). Of these, 1751 Nellore bulls were slaughtered at 24 months of age for further carcass beef analysis. The following traits were studied: beef tenderness, marbling, rib-eye area, backfat thickness and meat colour (lightness, redness and yellowness). The CNV detection was conducted through PennCNV software. The association analyses were performed using CNVRuler software. Key results: Several identified genomic regions were linked to quantitative trait loci associated with fat deposition (FABP7) and lipid metabolism (PPARA ; PLA2 family; BCHE), extracellular matrix (INS ; COL10A1), contraction (SLC34A3 ; TRDN) and muscle development (CAPZP). The gene-enrichment analyses highlighted biological mechanisms directly related to the metabolism and synthesis of lipids and fatty acids. Conclusions: The large number of potential candidate genes identified within the CNVRs, as well as the functions and pathways identified, should help better elucidate the genetic mechanisms involved in the expression of beef and carcass traits in Nellore cattle. Several CNVRs harboured genes that might have a functional impact to improve the beef and carcass traits. Implications: The results obtained contribute to upgrade the sensorial and organoleptic attributes of Nellore cattle and make feasible the genetic improvement of carcass- and meat-quality traits. Indicine breeds are the main source of beef products in tropical and subtropical regions. Thus, the knowledge of genetic variants that influence meat-quality traits should help improve the beef industry. Genomes studies to understand structural genetic variants are still limited in indicine cattle. The results of the present study will help improve and understand the genetic mechanisms involved in the expression of beef and carcass traits in Nellore cattle. [ABSTRACT FROM AUTHOR]

Machine learning (ML) methods have shown promising results in identifying genes when applied to large transcriptome datasets. However, no attempt has been made to compare the performance of combining different ML methods together in the prediction of high feed efficiency (HFE) and low feed efficiency (LFE) animals. In this study, using RNA sequencing data of five tissues (adrenal gland, hypothalamus, liver, skeletal muscle, and pituitary) from nine HFE and nine LFE Nellore bulls, we evaluated the prediction accuracies of five analytical methods in classifying FE animals. These included two conventional methods for differential gene expression (DGE) analysis (t -test and edgeR) as benchmarks, and three ML methods: Random Forests (RFs), Extreme Gradient Boosting (XGBoost), and combination of both RF and XGBoost (RX). Utility of a subset of candidate genes selected from each method for classification of FE animals was assessed by support vector machine (SVM). Among all methods, the smallest subsets of genes (117) identified by RX outperformed those chosen by t -test, edgeR, RF, or XGBoost in classification accuracy of animals. Gene co-expression network analysis confirmed the interactivity existing among these genes and their relevance within the network related to their prediction ranking based on ML. The results demonstrate a great potential for applying a combination of ML methods to large transcriptome datasets to identify biologically important genes for accurately classifying FE animals. [ABSTRACT FROM AUTHOR]

This study was performed to evaluate the effects of supplementation of lactating Nelore cows with calcium salts of long-chain fatty acids (Ca-LCFA) of soybean oil on in vitro oocytes competency, cleavage rate, embryo production rate, pregnancy rate, and sex ratio of transferred embryos. Fifteen multiparous Nelore cows grazed on a Tifton 85 pasture were allotted to two treatments: (1) supplement without fat inclusion (CONT, n = 6) and (2) supplement containing 47.2 g Ca-LCFA /kg (to provide an intake of 0.2 kg Ca-LCFA/day) based on dry matter (n = 9). Animals were subjected to 2.53 ± 1.35 rounds of consecutive ovum pick up at intervals of 27.65 ± 21.72 days. Oocytes were morphologically evaluated, selected, maturated, fertilized, and cultivated for embryo production in vitro and then transferred into recipients who had previously undergone an embryo transfer protocol at a fixed time. The number of aspirated oocytes, the proportion of viable oocytes, cleavage rate, embryo percentage, pregnancy rate, and sex ratio were not affected when Nelore cows were supplemented with Ca-LCFA of soybean oil compared with non-supplemented Nelore cows. In conclusion, our results suggest that feeding a supplement containing 47.2 g Ca-LCFA/kg (to provide an intake of 0.2 kg Ca-LCFA/day) to Nelore cows does not affect in vitro embryo production in lactating Nelore cows. However, further studies using higher dietary doses of fat could be useful to determine the potential of fat supplementation to improve in vitro embryo production.

This paper aimed to identify and evaluate the effects of sire breed on temperament and productive traits of different cross-breeds between Nellore (NE), Tabapua (TB), and Brahman (BR) bulls mated with Angus cows (AN), as well as the relationship between temperament and productive traits. The productive traits measured in this study include slaughter weight and post weaning weight gain. Temperament was assessed by flight-speed (FS). Carcass data collected in this study include hot carcass weight, hot carcass percentage, cold dressing percentage, carcass length, initial pH, ultimate pH, subcutaneous fat thickness and carcass longissimus muscle area. The sire breed effect was greater for slaughter weight. Hot carcass weight was not affected by the sire breed. The longissimus muscle area was larger for AN x TB and AN x NE crossbreeds than for AN x BR crossbreeds. Subcutaneous fat thickness and cold dressing percentage were not affected by sire breed. The offspring of NE, TB, and BR sires mated with AN cows had similar carcass measurements, except for the longissimus muscle area, which was smaller for offspring sired by the Brahman breed. The temperament trait was not influenced by sire breed.

Abstract: The objective of this work was to evaluate the effects of genomic information on the genetic evaluation of hip height in Brahman cattle using different matrices built from genomic and pedigree data. Hip height measurements from 1,695 animals, genotyped with high-density SNP chip or imputed from 50 K high-density SNP chip, were used. The numerator relationship matrix (NRM) was compared with the H matrix, which incorporated the NRM and genomic relationship (G) matrix simultaneously. The genotypes were used to estimate three versions of G: observed allele frequency (HGOF), average minor allele frequency (HGMF), and frequency of 0.5 for all markers (HG50). For matrix comparisons, animal data were either used in full or divided into calibration (80% older animals) and validation (20% younger animals) datasets. The accuracy values for the NRM, HGOF, and HG50 were 0.776, 0.813, and 0.594, respectively. The NRM and HGOF showed similar minor variances for diagonal and off-diagonal elements, as well as for estimated breeding values. The use of genomic information resulted in relationship estimates similar to those obtained based on pedigree; however, HGOF is the best option for estimating the genomic relationship matrix and results in a higher prediction accuracy. The ranking of the top 20% animals was very similar for all matrices, but the ranking within them varies depending on the method used.

Summary: Two farms applying reproductive technology for the Nellore beef cattle were selected. Both farms had the same technology programme of oestrous synchronization and embryo transfer, but management was different, especially regarding twins pregnancies. In the present study, we followed the farms from the moment of oestrous synchronization, embryo transfer (two per cow), until delivery and first care of the calves. In farm A, cows presenting twin pregnancies (5 from 13) were submitted to delivery induction, as well as calves and cows were monitored after birth. In farm B, such management was not followed with the twin pregnant cows (31 from 49). In both farms, freemartinism was detected, but this was not a problem as none of the animals would be selected for breeding. No dystocia was observed in farm A, while 48% of the twin pregnancies in farm B ended up in dystocia. Furthermore, the mortality rate of new-born calves in farm A was 10%, while in farm B it reached 32%. Although twin pregnancies remain a concern, we showed here that proper management during and after delivery minimizes animal and economic losses. [ABSTRACT FROM AUTHOR]

Cattle breeding routinely uses crossbreeding between subspecies (Bos taurus taurus and Bos taurus indicus) to form composite breeds, such as Brangus. These composite breeds provide an opportunity to identify recent selection signatures formed in the new population and evaluate the genomic composition of these regions of the genome. Using high-density genotyping, we first identified runs of homozygosity (ROH) and calculated genomic inbreeding. Then, we evaluated the genomic composition of the regions identified as selected (selective sweeps) using a chromosome painting approach. The genomic inbreeding increased at approximately 1% per generation after composite breed formation, showing the need of inbreeding control even in composite breeds. Three selected regions in Brangus were also identified as Angus selection signatures. Two regions (chromosomes 14 and 21) were identified as signatures of selection in Brangus and both founder breeds. Five of the 10 homozygous regions in Brangus were predominantly Angus in origin (probability >80%), and the other five regions had a mixed origin but always with Brahman contributing less than 50%. Therefore, genetic events, such as drift, selection, and complementarity, are likely shaping the genetic composition of founder breeds in specific genomic regions. Such findings highlight a variety of opportunities to better control the selection process and explore heterosis and complementarity at the genomic level in composite breeds. [ABSTRACT FROM AUTHOR]

Castration in beef cattle production has been proposed to reduce sexual and aggressive behaviour, increase carcass fat deposition, and improve meat quality traits, such as tenderness and juiciness. The aim of the present study was to evaluate the effects of the age of castration on performance, subprimal yield and meat quality of Nellore cattle raised on a pasture system. A total of 24 Nellore males were raised in a grass-fed system with Brachiaria brizantha since birth until slaughter (at 30 months old). Three treatments were assigned: castration at weaning (CW); castration at 20 months old (C20); and intact bulls (NoC). Males were weighed, and muscle and fat thickness were periodically evaluated by ultrasonography. The cold carcass weight, dressing and carcass pH (pH 24), and subprimal cut weights were recorded after 24 h of chilling. Samples of Longissimus lumborum (LL) were taken to measure meat quality traits. Animals that were castrated at weaning had lower bodyweight after 10 months of age with no changes in the supplement intakes, average daily gain, hot carcass weight and cold carcass weight compared with NoC. Intact males had greater cooking losses and carcass yield compared with others, with no differences for LL pH 24 according to the treatments. The castration did not change the LL muscle area, but decreased total forequarter, chunk, shoulder and eye of round weights, and increased the back fat over LL and rump fat. Animals castrated at weaning had higher marbling compared with others. In addition, regardless of age, castration improved tenderness, increased LL total lipids and decreased moisture compared with NoC. For sensory property, steers castrated at 20 months of age had lower juiciness, and NoC had a greater global sensory property compared with steers castrated at 20 months old. In conclusion, steers castrated at weaning had lower growth rate, final bodyweight and meat production compared with intact males. However, when castration was performed at 20 months, animals did not differ in most cases from castration at weaning and NoC. Tenderness was improved by castration, but sensory traits did not differ between groups. Castration in beef cattle can reduce the muscularity depending on the phase of life it occurs, and improves meat quality. The present study confirms the benefit of castration postpuberty, because it can ensure the high growth as that in intact males and greater fat deposition in carcass as that in castrated animals, with a high-quality meat production. [ABSTRACT FROM AUTHOR]

Context: Studies assessing the relationship between cattle reactivity and growth performance, as well as suitability to the feedlot, in Zebu cattle are limited. Based on previous studies using Bos Taurus cattle, it is expected that reactivity measured at weaning could be used as a predictor of feedlot performance, and that cattle with greater flight speed (FS) would have reduced average daily gain (ADG). Aims: The aims of this study were to (1) determine if FS (m/s) measured before entry into the feedlot could be used as a predictor of cattle performance, (2) evaluate the consistency of FS over time, and (3) determine when FS should be measured to best predict animal suitability to the feedlot. Methods: A total of 54 Nellore and 40 Guzerat calves were assessed by using FS, which was collected at the time of (FS0) and 1 week after weaning (FS1), as well as on Day 28 (FS28), 56 (FS56) and 168 (FS168) after entry into the feedlot, and a FS average was calculated using FS28, FS56 and FS168 (FS28–168). Performance using ADG (kg/calf.day) was calculated for each animal over three periods: ADG1–28, ADG28–168 and ADG1–168. Bunk attendance (min/calf.day) was recorded over a 173-day feeding period. Key results: The ADG28–168 was reduced by 0.14 kg/calf.day for each unit increase in FS0 (P < 0.05). Both ADG28–168 and ADG1–168 were reduced by 0.02 kg/calf.day for each unit increase in FS1 (P ≤ 0.01), but neither FS0 nor FS1 was associated with ADG1–28 (P > 0.10). A significant increase was observed between FS1 and FS28 (P < 0.01), followed by a reduction in FS56 (P < 0.01) and FS168 (P < 0.01). Conclusion: FS measured at or within 1 week of weaning has the potential to be used as an indicator of feedlot growth performance in Nellore and Guzerat cattle. Implications: Although our results do not indicate the efficacy of FS as a predictor of early suitability of cattle to the feedlot, it does have the potential to support its recommendation as an indicator of overall feedlot growth performance in Nellore and Guzerat breeds. There is evidence that cattle vary in their ability to adapt to potential stressors within a feedlot environment, ultimately affecting animal welfare and production efficiency. Our findings suggest that temperament assessed before entry into the feedlot can potentially be used as an indicator of growth performance. This finding may aid producers in the early identification of individual cattle that would perform poorly in a feedlot environment, so that they could be managed using an alternative production strategy. [ABSTRACT FROM AUTHOR]

Feed efficiency helps to reduce environmental impacts from livestock production, improving beef cattle profitability. We identified potential biomarkers (hub genes) for feed efficiency, by applying co-expression analysis in Longissimus thoracis RNA-Seq data from 180 Nelore steers. Six co-expression modules were associated with six feed efficiency-related traits (p -value ≤ 0.05). Within these modules, 391 hub genes were enriched for pathways as protein synthesis, muscle growth, and immune response. Trait-associated transcription factors (TFs) ELF1 , ELK3 , ETS1 , FLI1 , and TCF4 , were identified with binding sites in at least one hub gene. Gene expression of CCDC80 , FBLN5 , SERPINF1 , and OGN was associated with multiple feed efficiency-related traits (FDR ≤ 0.05) and were previously related to glucose homeostasis, oxidative stress, fat mass, and osteoblastogenesis, respectively. Potential regulatory elements were identified, integrating the hub genes with previous studies from our research group, such as the putative cis-regulatory elements (eQTLs) inferred as affecting the PCDH18 and SPARCL1 hub genes related to immune system and adipogenesis, respectively. Therefore, our analyses contribute to a better understanding of the biological mechanisms underlying feed efficiency in bovine and the hub genes disclosed can be used as biomarkers for feed efficiency-related traits in Nelore cattle. [ABSTRACT FROM AUTHOR]

Selection for bulls that would reach puberty early reduces the generation interval and increases fertility and herd productivity. Despite its economic importance, there are few QTL associated with age at puberty described in the literature. In this study, a weighted single‐step genome‐wide association study was performed to detect genomic regions and putative candidate genes related to age at puberty in young Nelore bulls. Several protein‐coding genes related to spermatogenesis functions were identified within the genomic regions that explain more than 0.5% of the additive genetic variance for age at puberty in Nelore bulls, such as ADAM11, BRCA1, CSNK2A, CREBBP, MEIOC, NDRG2, NECTIN3, PARP2, PARP9, PRSS21, RAD51C, RNASE4, SLX4, SPA17, TEX14, TIMP2 and TRIP13 gene. Enrichment analysis by DAVID also revealed several GO terms related to spermatogenesis such as DNA replication (GO:0006260), male meiosis I (GO:0007141), double‐strand break repair (GO:0006302), base excision repair (GO:0006284), apoptotic process (GO:0006915), cell–cell adhesion (GO: 0098609) and focal adhesion (GO:0005925). The heritability for age at puberty shows that this trait can be improved based on traditional EBV selection. Adding genomic information to the system helps to elucidate genes and molecular mechanisms controlling the sexual precocity and could help to predict sexual precocity in Nelore bulls with greater accuracy at younger age, which would speed up the breeding programme for this breed. [ABSTRACT FROM AUTHOR]

The aim of this study was to identify candidate regions associated with sexual precocity in Bos indicus. Nellore and Brahman were set as validation and discovery populations, respectively. SNP selected in Brahman to validate in Nellore were from gene regions affecting reproductive traits (G1) and significant SNP (p ≤ 10–3) from a meta‐analysis (G2). In the validation population, early pregnancy (EP) and scrotal circumference (SC) were evaluated. To perform GWAS in validation population, we used regression and Bayes C. SNP with p ≤ 10–3 in regression and Bayes factor ≥3 in Bayes C were deemed significant. Significant SNP (for EP or SC) or SNP in their ±250 Kb vicinity region, which were in at least one discovery set (G1 or G2), were considered validated. SNP identified in both G1 and G2 were considered candidate. For EP, 145 SNP were validated in G1 and 41 in G2, and for SC, these numbers were 14 and 2. For EP, 21 candidate SNP were detected (G1 and G2). For SC, no candidate SNP were identified. Validated SNP and their vicinity region were located close to quantitative trait loci or genes related to reproductive traits and were enriched in gene ontology terms related to reproductive success. These are therefore strong candidate regions for sexual precocity in Nellore and Brahman. [ABSTRACT FROM AUTHOR]

The aim of this study was to assess the distribution of runs of homozygosity (ROH) and autozygosity islands in the composite Montana Tropical® beef cattle to explore hotspot regions which could better characterize the different biological types within the composite breed. Montana animals (n = 1,436) were genotyped with the GGP‐LD BeadChip (~30,000 markers). ROH was identified in every individual using the plink v1.90 software. Medium and long ROH prevailed in the genome, which accounted for approximately 74% of all ROH detected. On an average, 2.0% of the genome was within ROH, agreeing with the pedigree‐based inbreeding coefficient. The Montana cattle with a higher proportion of productive breed types showed the highest number of autozygosity islands (n = 17), followed by those with a higher proportion of breeds adapted to tropical environments (n = 15). Enriched terms (p <.05) associated with the immune and inflammatory response, homeostasis, reproduction, mineral absorption, and lipid metabolism were described within the autozygosity islands. In this regard, over‐represented GO terms and KEGG pathways described in this population may play a key role in providing information to explore the genetic and biological mechanisms together with the genomic regions underlying each biological type that favoured their optimal performance ability in tropical and subtropical regions. [ABSTRACT FROM AUTHOR]

The aim of this research was to evaluate the effect of recombinant bovine somatotropin (bST) on pregnancy per artificial insemination (P/AI), cellular composition of the corpus luteum (CL) and endometrial gland morphometry. In Experiment 1, Nelore cows (n = 587) received a fixed-time artificial insemination (FTAI) protocol and, at insemination, received 0, 250 or 500 mg of bST subcutaneously (SC). In Experiment 2, Nelore cows (n = 243) received 0 or 500 mg of bST, SC, on D7 (D0 = day of FTAI). Blood samples were collected on D7 and D16 to measure progesterone (P4) concentrations. In Experiments 1 and 2, pregnancy diagnosis was performed 30 days after FTAI. In Experiment 3, Nelore heifers (n = 20) received a FTAI protocol, but were not inseminated, and on D0 (ovulation day), they received 0 (bST 0; n = 9) or 500 mg of bST (bST 500; n = 11), SC. The heifers were slaughtered on D15 (D0 = ovulation day), at which time the CL was evaluated for diameter, weight, a percentage of large (LLC) and small (SLC) luteal cells, and the concentration of progesterone in plasma measured. The number, perimeter and area of superficial and deep endometrial glands were evaluated. There was no difference in P/AI when bST was applied on D0 and D7. In Experiment 1, P/AI did not differ among treatments, with 59.28% (115/194), 58.38% (115/197) and 65.82% (129/196) for the bST 0, 250 and 500 treatments, respectively. In Experiment 2, P/AI did not differ between treatments, with 57.3% (71/124) and 60.5% (62/119) for the bST 0 and 500 treatments, respectively. Plasma progesterone concentrations on D16 was greater in the bST 500 (11.63 ± 0.84 ng/mL) than bST 0 (9.83 ± 0.88 ng/mL). In Experiment 3, there was no difference in ovarian diameter and weight, CL diameter, percentage of SLC, P4 concentrations and endometrial gland morphology. Heifers in the bST 500 treatment had heavier CL (3.11 ± 0.32 vs. 2.25 ± 0.20 g); however, the bST 0 treatment heifers had a greater percentage of LLC than did the bST 500 treatment (13.72 ± 1.16% vs. 8.60 ± 1.52). It was concluded that the doses of bST used in this study do not increase P/AI; however, they do cause changes in P4 concentration and the cellular composition of the CL. • Pregnancy per AI did not differ between control and bovine somatotropin treatments. • Plasma progesterone (P4) concentrations on day 16 were higher in the cows that received bovine somatotropin on day 7. • Bovine somatotropin administered on day 0, alters the cellular composition of the CL but not the P4 concentration. [ABSTRACT FROM AUTHOR]

The present study aims to determine the impact of differences in the locational relationship between the previous corpus luteum (CL) and the further ovulatory follicle (OF) on follicular dynamics and progesterone (P4) concentrations in Thai indigenous beef cows (White Lamphun) exhibiting two follicular waves. Twenty-one cows, exhibiting the two-wave follicular pattern, were studied through interovulatory intervals (IOI), and classified according to the relationship between the previous CL and the further OF on the cattle model ovaries. Classifications were outlined as either an ipsilateral (same ovary) relationship (n = 12), or a contralateral (opposite ovaries) relationship (n = 9). Ultrasound monitoring, which evaluated the follicular diameter, and collection of blood for determining the P4 concentration were performed each day throughout the IOI. The IOI was longer (P < 0.05) in the contralateral cows than in the ipsilateral cows (19.7 ± 0.33 days vs 18.5 ± 0.29 days). Cows with an ipsilateral relationship were found to have further OFs with greater (P < 0.05) diameters than were cows with a contralateral relationship (13.9 ± 0.31 mm vs 12.1 ± 0.21 mm). The mean growth rate of the further OF was greater (P = 0.05) in the ipsilateral cows than in the contralateral cows (1.1 ± 0.11 mm/day vs 0.8 ± 0.04 mm/day). On Day 17 of the IOI, the ipsilateral cows demonstrated their lowest concentration of P4 (P < 0.05). On Day 18 of the IOI, the concentrations of P4 tended to be lower (P = 0.09) in the ipsilateral cows than in the contralateral cows (0.6 ± 0.04 ng/mL vs 1.1 ± 0.12 ng/mL). The interval from the luteinisation until the end of the luteolysis was longer (P < 0.05) in the contralateral group than in the ipsilateral group (18.5 ± 0.50 days vs 16.7 ± 0.33 days). Thus, we conclude that in Thai indigenous beef cows, the growth rate and diameter of the further OF during luteolysis increases more in the ipsilateral relationship than in the contralateral relationship. A greater knowledge of ovarian structures and function are essential to the increase and improvement of animal reproduction. To our knowledge, the present study is the first investigative research seeking to provide data on the locational relationship between ovarian corpus luteum and ovulatory follicles in beef cows of Asian origin. The growth rate and diameter of a further ovulatory follicle during luteolysis increased more significantly in Thai indigenous beef cows with an ipsilateral relationship (same ovary), than in cows with a contralateral relationship (opposite ovaries). [ABSTRACT FROM AUTHOR]

The cattle tick Rhipicephalus microplus causes significant economic losses to cattle production systems and is a main barrier to the introduction of Bos taurus breeds and their crosses in Brazil. These breeds have the genetic potential to generate animals that are more productive, but they are also more susceptible to R. microplus. One of the alternatives for conventional tick control is the use of strategic control, aiming at delaying or even preventing the development of its resistance to acaricides. The present study aimed to evaluate the economic losses caused by tick infestation on the productive performance of two breeds of beef cattle and to evaluate the economic efficiency of tick strategic control and its impacts on beef cattle production systems. Animal weights were obtained from the literature and were used to calculate the weight loss in kilograms (kg) and the economic loss (US$) caused by R. microplus infestation. The cost/loss ratio of performing strategic control was also calculated. The data show that tick infestation causes economic losses to the breeds and groups of animals evaluated and reduces animal performance (weight loss). The results show a loss of US$34.61/animal in the backgrounding phase and US$7.97/animal in the finishing phase for Brangus animals and its crosses. In conclusion, the data show that strategic control is economically efficient for Brangus animals in the backgrounding phase, independent of the methods used for acaricide application. [ABSTRACT FROM AUTHOR]

This study evaluated the effects of the duration of ZH supplementation and days on feed (DOF) on performance, carcass characteristics, and saleable meat yield of Nellore young bulls. The fixed effects included the duration (0, 20, 30, or 40 d before slaughter plus a 3 d ZH withdrawal period—8.33 mg of ZH/kg of DM) and DOF (90 and 117 d). Feed efficiency (G:F) linearly increased when the duration of ZH supplementation increased (p < 0.01). Nellore bulls fed ZH had greater HCW (p < 0.01), dressing percentage (p < 0.01) and Longissimus muscle area (LMA) (p < 0.01), but less 12th-rib fat (p = 0.04) than the control group. The hot carcass weight (HCW) (p < 0.01), and dressing percentage increased linearly (p < 0.01) with the increase of duration of ZH supplementation. The HCW, ossification, and 12th-rib fat increased with DOF (p < 0.01). The ZH supplemented group had most of the individual cuts of hindquarters and total saleable meat increased compared with the control. Zilpaterol hydrochloride was effective in improving hot carcass weight, hindquarter, and saleable meat yields of Nellore bulls when fed for at least 20 d before slaughter, independently of days on feed.

This is a 31-year retrospective cohort study aiming to evaluate the relationship between the proportion of B. indicus genetics of crossbred dams and the weaning weight of their calves. Our hypothesis was that crossbred dams with intermediate degree of B. indicus genetics wean heavier calves than those with low-tohigh degree of B. indicus genetics at the subtropical condition. The cow-calf pairs (n = 4,901) were in six evenly distributed breed groups according to the proportion of Brahman: G0-19%, G21-34%, 38%, G41-59%; G63-78% and G81-100%. Dams reared contemporaneously were undergone to controlled breeding seasons where the six breed groups of dams and sires were reciprocally mated. Non-adjusted and 205d-adjusted weaning weight of calves were considered as dependent variables and analyzed using MIXED procedure of SAS 9.4. The following independent variables were included in the model as fixed effects: parity category order (primiparous, secundiparous and pluriparous), calving period (0-30d, 31-60d, 61-90d and 91-120d), gender of calf (male or female) and breed group. Year was included as a random effect. All possible interactions were tested and only those with P < 0.20 remained in the final model. Most of all, for the nonadjusted weaning weight, the breed group effect (P < 0.001) varied according to the calving period. Dams calving after 30d of calving season weaned the lightest calves. However, the magnitude of such losses was variable within breed groups. Calves from G0-19% and G81-100% of dams were the most and least impacted by calving period, respectively. The difference on weaning weight between calves born at 0-30d and 91-120d was 60kg for G0-19% of dams and 30kg for G81-100% of dams. For every other breed group, this difference ranged from 45kg to 55kg. In spite of such interaction effect, calves from G0-19% and G81-100% of dams were lighter (230.4 and 225.0 kg, respectively; SEM: 3.4) than any other breed group (238.3 to 242.5 kg). For the 205d-adjusted weaning weight, there was a breed group effect (P < 0.001), regardless of calving period. Lighter calves were still weaned from G0-19% and G81-100% of dams (214.9 and 206.5 kg, respectively, SEM: 2.8) compared with any other breed group (223.4 to 227.6 kg). Thus, crossbred dams with intermediate degree of B. indicus genetics weaned the heaviest calves, probably as result of outbreeding enhancement provided by the adaptability of B. indicus to the tropics and productivity of B. taurus. [ABSTRACT FROM AUTHOR]

• There are differences between Nellore lineages for feed intake and efficiency. • Inclusion of genomic data increases the accuracy of breeding value. • It is possible to exploit the genetic differences in breeding programmes. The capacity of beef cattle to transform feed into meat is fundamental to this production system, but it has not been accounted for in the genetic selection of Nellore animals, a main tropical breed. The objective of the present study was to verify differences in the genetic effects between Nellore lineages, allied to the inclusion of genomic data in these estimates. Phenotypic data of 2058 Nellore cattle were used for the following traits: average daily gain (ADG), dry matter intake (DMI), feed conversion ratio (FCR) and residual feed intake (RFI). The pedigree contained 9,079 animals, of which 2226 were genotyped. Eleven main founders were selected of the Nellore breed (Founder), as well as 19 new founders (Breeder), with cattle that are highly representative animals of this breed. The genetic and genomic effects of each founder and its accuracy were estimated by the average information restricted maximum likelihood method using the program BLUPF90. There was genetic variability in Nellore lineages in terms of performance, feed intake and efficiency, and the accuracy of these estimates increased with the inclusion of genomics. Thus, it is possible to choose progenitors of the best lineages, with better genetic potential and good accuracy, to improve these traits in beef production. [ABSTRACT FROM AUTHOR]

Eighteen Nellore steers were classified as either excitable (high index) or calm (low index) temperament, and high or low WB Shear Force (SF) in Longissimus lumborum at 16 days postmortem, with a subset assigned to four groups: HTHS–high temperament and SF (n = 5); HTLS–high temperament and low SF (n = 4); LTHS–low temperament and high SF (n = 4); LTLS–low temperament and SF (n = 5). Only the second calpastatin peak was detected at 48 h in the all samples, and the calpastatin activity only differed (P <.05) between shear force groups. High WBSF groups had greater expression of CAST gene (P <.05) in the high and low temperament. Western blots showed a calpastatin fragmentation pattern very particular to each group with high molecular weight bands present in the HTHS. Temperament was not a determinant factor in postmortem proteolysis variation. However, greater WBSF aged meat from high temperament animals had greater calpastatin activity and less calpastatin fragments formed during the postmortem period analyzed. • After 48 hours postmortem, only peak 2 of calpastatin was observed • Excitable temperament may be related not only to rate of tenderization but also the extension of the process; • High WBSF groups had greater expression of CAST independent of temperament; • Western blots showed a calpastatin fragmentation pattern with high molecular weight bands (80–90 kDa) in the HTHS group. [ABSTRACT FROM AUTHOR]

Twenty-seven Nellore cow-calf pairs were submitted for feed efficiency testing. The animals were weighed every 21 ± 5 days to obtain metabolic body weight (BW0.75) and average daily gain (ADG). Subcutaneous fat thickness (SFT; at 20, 83, 146, and 176 days post-calving); milk yield and components (63, 85, and 151 days); levels of glucose, cholesterol, triglycerides, β-hydroxybutyrate, albumin, urea, creatinine, calcium, phosphorus, magnesium, insulin, and cortisol (15, 41, 62, and 124 days); and ingestive behavior were evaluated. Residual feed intake was calculated for the first stage (RFI1; 21 to 100 days post-calving) and the second stage of lactation (RFI2; 100 to 188 days post-calving), and the cows were classified based on RFI1 as most efficient (RFI1 < 0) and least efficient (RFI1 > 0). Negative RFI1 cows consumed 1.3 kg/day of dry matter, or 9.77%, less than positive RFI1 cows. Most- and least-efficient cows did not differ in terms of subcutaneous fat thickness traits and milk yield or energy-corrected milk (ECM). Glucose (P = 0.0785), triglycerides (P = 0.0795), and phosphorus (P = 0.0597) concentrations were higher in the first stage of lactation in most-efficient cows. Maternal characteristics such as calf weight at birth and at 205 days and ADG were similar in most- and least-efficient cows. The most-efficient cows are more economic as they consume less feed for the same level of production. [ABSTRACT FROM AUTHOR]

The identification of selection signature genes may help to detect genomic regions that underwent artificial selection and contributed to phenotypic diversity. The aim of this study, therefore, was to detect selection signatures in candidate genes and quantitative trait locus (QTL) for reproductive traits in a Nellore population being selected for sexual precocity. A total of 2035 Nellore heifers, sourced from breeding programs focused on sexual precocity, were used. Candidate genes and some specific QTL related to reproductive traits were chosen based on published literature and Animal QTL databases, respectively, for investigation whether these regions were affected by selection. Selection signature DNA sequences were detected in the selected regions using the extended haplotype homozygosity (EHH) and relative extended haplotype homozygosity (REHH) methods. From 22,241 single nucleotide polymorphisms (SNPs) located in the candidate genes and QTL, 17,312 SNPs generated 2756 haplotype blocks. A total of 7518 EHH tests were analyzed using haplotypes with a frequency of more than 25%, for which there were 39 tests that were significant for REHH (P <0.01). Selection signature DNA sequences were detected that contained several QTLs for important reproductive traits in cattle, suggesting that reproductive traits may have been affected by selection for sexual precocity in this population. Forty-six genes were located in the selection signature regions, whereas 24 genes participated in important biological processes or pathways that may underlie sexual precocity. These results indicate there are possible molecular mechanisms related to sexual precocity in the Nellore breed. [ABSTRACT FROM AUTHOR]

Thermal stress in hot humid conditions limits cattle production. The objectives for this study were to estimate genetic parameters for hair characteristics and core body temperature under low and high temperature humidity index (THI) conditions. Hair samples were collected and measured for length and diameter. Core body temperature was measured as vaginal temperature every 15 min over a 5-d period using an iButton temperature measuring device implanted in a blank CIDR in 336 heifers from the University of Florida multibreed herd (ranging from 100% Angus to 100% Brahman). Restricted maximum likelihood procedures were used to estimate heritabilities from multiple bivariate animal models using the WOMBAT program. Estimates of heritability for hair diameter, undercoat length, topcoat length, body temperature under low THI conditions, and body temperature under high THI conditions were 0.50, 0.67, 0.42, 0.32, and 0.26, respectively. The genetic parameters estimated in this study indicate a large, exploitable genetic variance which can be selected upon to improve tolerance in cattle. Breed effects for differing compositions of Brahman and Angus were also estimated. As Brahman breed composition increased by 25% undercoat length, topcoat length, body temperature under low THI conditions, and body temperature under high THI conditions decreased by 1.32 mm, 2.94 mm, 0.11 °C, and 0.14 °C, respectively. Under both low and high THI conditions, cattle with 25% Brahman breed composition or greater maintained a significantly lower body temperature than the 100% Angus breed group. The incorporation of Brahman germplasm is recommended for herds that often experience heat stress conditions in order to increase resilience to heat stress. [ABSTRACT FROM AUTHOR]

Thermal stress in hot humid conditions limits cattle production. The objectives for this study were to estimate genetic parameters for hair characteristics and core body temperature under low and high temperature humidity index (THI) conditions. Hair samples were collected and measured for length and diameter. Core body temperature was measured as vaginal temperature every 15 min over a 5-d period using an iButton temperature measuring device implanted in a blank CIDR in 336 heifers from the University of Florida multibreed herd (ranging from 100% Angus to 100% Brahman). Restricted maximum likelihood procedures were used to estimate heritabilities from multiple bivariate animal models using the WOMBAT program. Estimates of heritability for hair diameter, undercoat length, topcoat length, body temperature under low THI conditions, and body temperature under high THI conditions were 0.50, 0.67, 0.42, 0.32, and 0.26, respectively. The genetic parameters estimated in this study indicate a large, exploitable genetic variance which can be selected upon to improve tolerance in cattle. Breed effects for differing compositions of Brahman and Angus were also estimated. As Brahman breed composition increased by 25% undercoat length, topcoat length, body temperature under low THI conditions, and body temperature under high THI conditions decreased by 1.32 mm, 2.94 mm, 0.11 °C, and 0.14 °C, respectively. Under both low and high THI conditions, cattle with 25% Brahman breed composition or greater maintained a significantly lower body temperature than the 100% Angus breed group. The incorporation of Brahman germplasm is recommended for herds that often experience heat stress conditions in order to increase resilience to heat stress. [ABSTRACT FROM AUTHOR]

Fatty acid (FA) content affects the sensorial and nutritional value of meat and plays a significant role in biological processes such as adipogenesis and immune response. It is well known that, in beef, the main FAs associated with these biological processes are oleic acid (C18:1 cis9, OA) and conjugated linoleic acid (CLA-c9t11), which may have beneficial effects on metabolic diseases such as type 2 diabetes and obesity. Here, we performed differential expression and co-expression analyses, weighted gene co-expression network analysis (WGCNA) and partial correlation with information theory (PCIT), to uncover the complex interactions between miRNAs and mRNAs expressed in skeletal muscle associated with FA content. miRNA and mRNA expression data were obtained from skeletal muscle of Nelore cattle that had extreme genomic breeding values for OA and CLA. Insulin and MAPK signaling pathways were identified by WGCNA as central pathways associated with both of these fatty acids. Co-expression network analysis identified bta-miR-33a/b, bta-miR-100, bta-miR-204, bta-miR-365-5p, bta-miR-660, bta-miR-411a, bta-miR-136, bta-miR-30-5p, bta-miR-146b, bta-let-7a-5p, bta-let-7f, bta-let-7, bta-miR 339, bta-miR-10b, bta-miR 486, and the genes ACTA1 and ALDOA as potential regulators of fatty acid synthesis. This study provides evidence and insights into the molecular mechanisms and potential target genes involved in fatty acid content differences in Nelore beef cattle, revealing new candidate pathways of phenotype modulation that could positively benefit beef production and human consumption. [ABSTRACT FROM AUTHOR]

• Heritabilities for carcass traits of beef cattle. • Breeding values of carcass traits according to residual feed intake. • Genetic trend of carcass traits in relation to different residual feed intake groups. Our objective was to verify if genetic differences (i.e., additive genetic variation) among animals classified in different residual feed intake adjusted for fat (RFI fat) groups occur, and if selecting for RFI fat impacts carcass traits. Ribeye area, backfat thickness, rump cap (' picanha ' in Brazilian Portuguese) fat thickness, subcutaneous fat thickness, and marbling score were evaluated in relation to the high, medium and low RFI fat groups. Tri-trait analyses were performed using the animal model. The estimated values for heritability were high and no difference was found between the obtained values according to the RFI fat groups, for any of the carcass traits evaluated. These results demonstrate that all traits evaluated in this study have the potential for genetic improvement, regardless of RFI fat classification. The genetic improvement capacity of the herd was confirmed by the genetic trends performed using the breeding value of each RFI fat group, and independently of the group a bull belongs. Therefore, regardless of whether the animals are more or less efficient in terms of RFI fat , it is possible to practice selection for RFI fat in conjunction with carcass traits. [ABSTRACT FROM AUTHOR]