14 results on '"Xichun Li"'
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2. Edge-Labeled and Node-Aggregated Graph Neural Networks for Few-Shot Relation Classification
- Author
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Jiayi Wang, Lina Yang, Xichun Li, Patrick Shen-Pei Wang, and Zuqiang Meng
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Artificial Intelligence ,Computer Vision and Pattern Recognition ,Software - Abstract
Relation classification as a core technique for building knowledge graphs becomes a critical task in natural language processing. The fact that humans can learn by summarizing and generalizing limited knowledge motivates scholars to explore few-shot learning. Graph neural networks provide a method to measure the distance between nodes, which improves the model effect in the problem of few-shot relation classification. However, graph neural network methods focus only on node information and ignore edge information which implies inter-class and intra-class relations. This paper proposes edge-labeled and node-aggregated graph neural networks (ENGNNs) for few-shot relation classification: edge labels are encoded and used for node information aggregation. In addition, a process of semi-supervised learning is designed to discover a better solution for one-shot learning. Compared with previous methods, experimental results show that the proposed ENGNN model improves the performance of the graph neural network on the FewRel dataset.
- Published
- 2023
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3. Automatic Detection of Bridge Surface Crack Using Improved YOLOv5s
- Author
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Haoyan Yang, Lina Yang, Thomas Wu, Zuqiang Meng, Youju Huang, Patrick Shen-Pei Wang, Peng Li, and Xichun Li
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Artificial Intelligence ,Computer Vision and Pattern Recognition ,Software - Abstract
Bridge crack detection is a key task in the structural health monitoring of Civil Engineering. In the traditional bridge crack detection methods, there exist some problems such as high cost, low speed, and complex structure. This paper developed a bridge surface crack detection system based on improved YOLOv5s. The GhostBottleneck module was employed to replace the classic C3 module of the YOLOv5s backbone network, meanwhile the channel attention module namely ECA-Net was also added to the network, which not only reduced the amount of calculation, but also enhanced the ability of the network in extracting cross-channel information features. The adaptive spatial feature fusion (ASFF) was introduced to address the conflict problem caused by the inconsistency of feature scale in the network feature fusion stage, and the transfer learning was utilized to train the network. The experimental results showed that the improved YOLOv5s performed better than Faster R-CNN, SSD, YOLOv3, and YOLOv5s, with the Precision of 93.6%, Recall of 95.4%, and mAP of 98.4%. Further, the improved YOLOv5s was deployed in PyQt5 to realize the real-time detection of bridge cracks. This research showed that the proposed model not only provides a novel solution for bridge surface crack detection, but also has certain industrial application value.
- Published
- 2022
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4. Phylogenetic Analysis: A Novel Method of Protein Sequence Similarity Analysis
- Author
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Wei Li, Lina Yang, Zuqiang Meng, Yu Qiu, Patrick Shen-Pei Wang, and Xichun Li
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Artificial Intelligence ,Computer Vision and Pattern Recognition ,Software - Abstract
Protein sequence similarity analysis (PSSA) is a significant task in bioinformatics, which can obtain information about unknown sequences such as protein structures and homology relationships. Protein sequence refers to the series of amino acids with rich physical and chemical properties, namely the basic structure of proteins. However, sequence similarity analysis and phylogenetic analysis between different species which have complex amino acid sequences is a challenging problem. In this paper, nine properties of amino acids were considered and the sequence was converted into numerical values by principal component analysis (PCA); with Haar Wavelet Transform, and Higuchi fractal dimension (HFD), a new feature vector is constructed to represent the sequence; Spearman distance was selected to calculate the distance matrix and the phylogenetic tree was constructed. In this paper, two representative protein sequences (9 ND5 (NADH dehydrogenase 5) and 8 ND6 (NADH dehydrogenase 6)) were selected for similarity analysis and phylogenetic analysis, and compared with MEGA software and other existing methods. The extensive results show that our method is outperforming and results consistent with the known facts.
- Published
- 2022
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5. Multi-Content Merging Network Based on Focal Loss and Convolutional Block Attention in Hyperspectral Image Classification
- Author
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Lina Yang, Fengqi Zhang, Patrick Shen-Pei Wang, Xichun Li, and Huiwu Luo
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Artificial Intelligence ,Computer Vision and Pattern Recognition ,Software - Abstract
Simultaneous extraction of spectral and spatial features and their fusion is currently a popular solution in hyperspectral image (HSI) classification. It has achieved satisfactory results in some research. Because the scales of objects are often different in HSI, it is necessary to extract multi-scale features. However, this aspect was not taken into account in many spectral-spatial feature fusion methods. This causes the model to be unable to get sufficient features on scales with a large difference range. The model (MCMN: Multi-Content Merging Network) proposed in this paper designs a multi-branch fusion structure to extract multi-scale spatial features by using multiple dilated convolution kernels. Considering the interference of the surrounding heterogeneous objects, the useful information from different directions is also fused together to realize the merging of multiple regional features. MCMN introduces a convolution block attention mechanism, which fully extracts attention features in both spatial and spectral directions, so that the network can focus on more useful parts, which can effectively improve the performance of the model. In addition, since the number of objects in each class is often discrepant, it will have some impact on the training process. We apply the focal loss function to eliminate the negative factor. The experimental results of MCMN on three data sets have a breakthrough compared with the other comparison models, which highlights the role of MCMN structure.
- Published
- 2022
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6. Improving Utterance Rewriter Based on MMI and Text Data Augmentation
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Lina Yang, Hai Lin, Wei Li, Zuqiang Meng, Patrick Shen-Pei Wang, Xichun Li, and Huiwu Luo
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Artificial Intelligence ,Computer Vision and Pattern Recognition ,Software - Abstract
In multi-round dialogue tasks, how to maintain the consistency of model answers is a major research challenge. Every answer to the model should be time dependent, causal, and logical. In order to maintain the consistency of the personality, dialogue style, and context of the model, it is necessary to retain the key information in the historical dialogue as much as possible so that the model can generate more accurate answers. Utterance rewriting is a technique that replenishes the information of the current sentence by analyzing the historical dialogue, so as to retain the key information. This paper mainly uses text augmentation, Maximum Mutual Information (MMI) method and character correction method based on Knuth–Morria–Pratt (KMP) algorithm to improve the effect of utterance rewriting generation. The number of original statement rewriting datasets is limited, and the cost of manual manufacturing is too high. By using the method of text data augmentation based on coreference resolution, the positive dataset that is missing from the statement rewriting dataset is repaired. At the same time, the existing datasets are expanded to increase the number of data. The generated results are optimized by using the MMI method, and the KMP character correction method is used to modify the wrong characters to improve the overall accuracy.
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- 2022
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7. Visualization of RNA secondary structure with pseudoknots
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Yuan Yan Tang, Lina Yang, Xichun Li, Huiwu Luo, and Yang Liu
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Discrete wavelet transform ,Computer science ,business.industry ,Applied Mathematics ,RNA ,Pattern recognition ,Function (mathematics) ,Fractal dimension ,Nucleic acid secondary structure ,Visualization ,Signal Processing ,Artificial intelligence ,business ,Information Systems - Abstract
The function of pseudoknots cannot be ignored in the RNA secondary structure. Existing methods for analyzing RNA secondary structures with pseudoknots exhibit many shortcomings. This paper presents a novel RNA secondary structure visualization method in the case of a joint analysis of RNA primary structures and secondary structures. The way is based on the page number representation of the RNA secondary structure. It innovatively uses five vectors to represent bases, which are sequentially connected to outline the characteristics of the RNA secondary structure. The method covers almost all the constituent elements of the RNA secondary structure and extracts features completely. Experiments are based on the available techniques for large-scale annotation of RNA secondary structures, using a combination method of discrete wavelet transform and fractal dimension. The classification effect is compared with the previous RNA secondary structure representation methods. Experimental results show that the RNA secondary structure visualization method proposed in this paper has good application prospects in RNA secondary structure classification.
- Published
- 2021
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8. Smart Home Privacy Protection Based on the Improved LSB Information Hiding
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Lina Yang, Xiaocui Dang, Patrick S. P. Wang, Xichun Li, Yuan Yan Tang, Ren Ping Liu, and Haiyu Deng
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business.industry ,Computer science ,Privacy protection ,Computer security ,computer.software_genre ,Least significant bit ,Artificial Intelligence ,Home automation ,Information hiding ,Computer Vision and Pattern Recognition ,Artificial intelligence ,business ,Internet of Things ,computer ,Software - Abstract
Smart home is an emerging form of the Internet of Things (IoT), enabling people to enjoy a convenient and intelligent life. The data generated by smart home devices are transmitted through the public channel, which is not secure enough, so the secret data in smart home are easily intercepted by malicious adversaries. In order to solve this problem, this paper proposes a smart home privacy protection method combining DES encryption and the improved Least Significant Bit (LSB) information hiding algorithm, changing the practice of directly exposing smart home secret information to the Internet, first, using Data Encryption Standard (DES) encryption to encrypt the smart home information and second, the improved LSB information hiding algorithm is used to hide the ciphertext, so that the adversary cannot detect the smart home secret information. The goal of the scheme is to provide a double protection for the secure transmission of the smart home secret information. If an attacker wants to carry out an attack, it has to break through at least two defense lines, which seems impossible to do. Experiment results show that the improved LSB algorithm is more robust than the existing algorithms, and it is very safe. Therefore, the scheme proposed in this paper is very practical for protecting the smart home secret information.
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- 2021
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9. Graph-Based Analysis of RNA Secondary Structure Similarity Comparison
- Author
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Jun Wu, Patrick S. P. Wang, Lina Yang, Yang Liu, Xiaochun Hu, and Xichun Li
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General Computer Science ,Article Subject ,Computer science ,0206 medical engineering ,02 engineering and technology ,Nucleic acid secondary structure ,03 medical and health sciences ,Cluster analysis ,Representation (mathematics) ,030304 developmental biology ,0303 health sciences ,Quantitative Biology::Biomolecules ,Multidisciplinary ,biology ,business.industry ,RNA ,RNA virus ,Pattern recognition ,QA75.5-76.95 ,biology.organism_classification ,Non-coding RNA ,Tree (graph theory) ,Quantitative Biology::Genomics ,Distance matrix ,Electronic computers. Computer science ,Artificial intelligence ,business ,020602 bioinformatics - Abstract
In organisms, ribonucleic acid (RNA) plays an essential role. Its function is being discovered more and more. Due to the conserved nature of RNA sequences, its function mainly depends on the RNA secondary structure. The discovery of an approximate relationship between two RNA secondary structures helps to understand their functional relationship better. It is an important and urgent task to explore structural similarities from the graphical representation of RNA secondary structures. In this paper, a novel graphical analysis method based on the triple vector curve representation of RNA secondary structures is proposed. A combinational method involving a discrete wavelet transform (DWT) and fractal dimension with sliding window is introduced to analyze and compare the graphs derived from feature extraction; after that, the distance matrix is generated. Then, the distance matrix is analyzed by clustering and visualized as a clustering tree. RNA virus and noncoding RNA datasets are applied to perform experiments and analyze the clustering tree. The results show that the proposed method yields more accurate results in the comparison of RNA secondary structures.
- Published
- 2021
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10. Multi-scale spatial-spectral fusion based on multi-input fusion calculation and coordinate attention for hyperspectral image classification
- Author
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Fengqi Zhang, Xichun Li, Lina Yang, Zuqiang Meng, and Patrick S. P. Wang
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Channel (digital image) ,Computer science ,business.industry ,Deep learning ,Concatenation ,Perspective (graphical) ,Pattern recognition ,Interference (wave propagation) ,Convolution ,Artificial Intelligence ,Feature (computer vision) ,Signal Processing ,Computer Vision and Pattern Recognition ,Artificial intelligence ,Scale (map) ,business ,Software - Abstract
Recently, the deep learning method that integrates image features has gradually become a hot development trend in hyperspectral image classification. However, these studies did not fully consider the fusion of image features, and did not remove the interference to the classification process caused by the difference in the size of the objects. These factors hinder the further improvement of the classification effect. To eliminate these drawbacks, this paper proposes a more effective fusion scheme (MSF-MIF), which realizes the fusion from the perspective of location characteristics and channel characteristics through 3D convolution and spatial feature concatenation. In view of the size discrepancy of the objects to be classified, this method extracts features from several input patches of different scales and uses the novel calculation method proposed to fuse them, which minimizes the interference caused by size differences. In addition, this research also tried to quote the coordinate attention structure for the first time that combines spatial and spectral attention features to further improve the classification performance. Experimental results on three commonly used data sets prove that this framework has achieved a breakthrough in classification accuracy.
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- 2022
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11. Application Of LSTM In Protein Structure Prediction LINA
- Author
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Lina Yang, Pu Wei, Xichun Li, and Yuan Yan Tang
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0301 basic medicine ,Sequence ,Artificial neural network ,Basis (linear algebra) ,business.industry ,Spatial structure ,Computer science ,0206 medical engineering ,Pattern recognition ,02 engineering and technology ,Construct (python library) ,Protein structure prediction ,Data set ,03 medical and health sciences ,030104 developmental biology ,Artificial intelligence ,business ,Protein secondary structure ,020602 bioinformatics - Abstract
In this paper the authors discuss the applications of LSTM Neural Network in Protein Structure Prediction. The main idea is to construct a LSTM neural network. Predicting the secondary structure of a protein is the basis content for predicting its spatial structure. In this article, a position-specific scoring matrices (PSSM) containing evolutionary information is linked to other features to construct a completely new feature set. The CB513 data set is selected to construct LSTM neural networks to predict the secondary structure of the sequence. Experiments have shown that the proposed method effectively improves the prediction accuracy and is better than the previous method. The idea in this paper can also be applied to the analysis of other sequences.
- Published
- 2019
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12. PseKNC and Adaboost-Based Method for DNA-Binding Proteins Recognition
- Author
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Lina Yang, Xichun Li, Xiangyu Li, Patrick S. P. Wang, and Ting Shu
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0303 health sciences ,business.industry ,0206 medical engineering ,02 engineering and technology ,Computational biology ,DNA-binding protein ,Replication (computing) ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Artificial Intelligence ,law ,Component (UML) ,Recombinant DNA ,Computer Vision and Pattern Recognition ,Artificial intelligence ,AdaBoost ,business ,020602 bioinformatics ,Software ,DNA ,030304 developmental biology - Abstract
DNA-binding proteins are an essential part of the DNA. It also an integral component during life processes of various organisms, for instance, DNA recombination, replication, and so on. Recognition of such proteins helps medical researchers pinpoint the cause of disease. Traditional techniques of identifying DNA-binding proteins are expensive and time-consuming. Machine learning methods can identify these proteins quickly and efficiently. However, the accuracies of the existing related methods were not high enough. In this paper, we propose a framework to identify DNA-binding proteins. The proposed framework first uses PseKNC (ps), MomoKGap (mo), and MomoDiKGap (md) methods to combine three algorithms to extract features. Further, we apply Adaboost weight ranking to select optimal feature subsets from the above three types of features. Based on the selected features, three algorithms (k-nearest neighbor (knn), Support Vector Machine (SVM), and Random Forest (RF)) are applied to classify it. Finally, three predictors for identifying DNA-binding proteins are established, including [Formula: see text], [Formula: see text], [Formula: see text]. We utilize benchmark and independent datasets to train and evaluate the proposed framework. Three tests are performed, including Jackknife test, 10-fold cross-validation and independent test. Among them, the accuracy of ps+md is the highest. We named the model with the best result as psmdDBPs and applied it to identify DNA-binding proteins.
- Published
- 2021
- Full Text
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13. Hyperspectral image classification using wavelet transform-based smooth ordering
- Author
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Lina Yang, Huiwu Luo, Zuqiang Meng, Xichun Li, Cheng Zhong, Yuan Yan Tang, Hailong Su, and Yang Lu
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business.industry ,Computer science ,Applied Mathematics ,Feature extraction ,0211 other engineering and technologies ,Hyperspectral imaging ,Wavelet transform ,Pattern recognition ,02 engineering and technology ,Image (mathematics) ,Signal Processing ,0202 electrical engineering, electronic engineering, information engineering ,Hyperspectral image classification ,020201 artificial intelligence & image processing ,Artificial intelligence ,business ,Spatial analysis ,021101 geological & geomatics engineering ,Information Systems - Abstract
To efficiently improve the accuracy of hyperspectral image (HSI) classification, the spatial information is usually fused with spectral information so that the classification performance can be enhanced. In this paper, we propose a new classification method called wavelet transform-based smooth ordering (WTSO). WTSO consists of three main components: wavelet transform for feature extraction, spectral–spatial based similarity measurement, smooth ordering based 1D embedding, and construction of final classifier using interpolation scheme. Specifically, wavelet transform is first imposed to decompose the HSI signal into approximate coefficients (ACs) and details coefficients (DCs). Then, to measure the similar level of pairwise samples, a novel metric is defined on the ACs, where the spatial information serves as the prior knowledge. Next, according to the measurement results, smooth ordering is applied so that the samples are aligned in a 1D space (called 1D embedding). Finally, since the reordering samples are smooth, the labels of test samples can be recovered using the simple 1D interpolation method. In the last step, in order to reduce the bias and improve accuracy, the final classifier is constructed using multiple 1D embeddings. The use of wavelet transform in WTSO can also reduce the high dimensionality of HSI data. By converting the hight-dimensional samples into a 1D ordering sequence, WTSO can reduce the computational cost, and simultaneously perform classification for the test samples. Note that in WTSO, the smooth ordering based 1D embedding and interpolation are executed in an iterative manner. And they will be terminated after finite steps. The proposed method is experimentally demonstrated on two real HSI datasets: IndianPines and University of Pavia, achieving promising results.
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- 2019
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14. An Enhancement Algorithm Based on Fuzzy Sets Algorithm Using Computer Vision System for Chip Image Processing
- Author
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Chengxiang Tan, Xichun Li, and Lina Yang
- Subjects
Pixel ,Computer science ,business.industry ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Image processing ,Sobel operator ,Chip ,Edge detection ,Prewitt operator ,Computer vision ,Artificial intelligence ,Mean-shift ,business ,Algorithm ,FSA-Red Algorithm - Abstract
In industry, chip vision-based detection system cannot detect the dots and shatter within 2 pixels. In the process of chip image detection, image processing algorithm has great influence on the effectiveness and accuracy of detection and recognition. Among them, the image enhancement and edge extraction are the primary characteristics. The classical edge extraction methods mainly include Prewitt operator, Sobel operator, and traditional canny operator. By using these, the processing speed is fast and simple, but to shatter edge extraction is not efficient. In this paper, an enhancement algorithm based on fussy sets algorithm for the chip image processing is presented. We expect that the proposed algorithm can improve the detection accuracy within 2 pixels and improve the processing efficiency.
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- 2013
- Full Text
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