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Your search keyword '"J Alfred Bonilla"' showing total 4 results
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4 results on '"J Alfred Bonilla"'

1. Complete Genome Sequences of 44 Arthrobacter Phages

Author

Tamarah L. Adair, Charles J. Daniels, Lee E. Hughes, Phire Program, Emily L. Stowe, Bobby L. Gaffney, Kirsten Monsen-Collar, Melinda Harrison, A. Javier Lopez, Robert C. Benjamin, Sandra D. Adams, Sarah Ball, Graham F. Hatfull, Daniel A. Russell, Amanda K. Staples, Rebecca A. Garlena, Gregory P. Krukonis, Steven G. Cresawn, J. Alfred Bonilla, Sea-Phages Program, Karen K. Klyczek, Deborah Jacobs-Sera, Welkin H. Pope, Caroline A. Breitenberger, Marie C. Pizzorno, Rodney A. King, and Claire A. Rinehart

Subjects
0301 basic medicine, Whole genome sequencing, Genetics, biology, Arthrobacter sp, Myoviridae, biology.organism_classification, Genome, Siphoviridae, 03 medical and health sciences, Podoviridae, chemistry.chemical_compound, 030104 developmental biology, chemistry, Arthrobacter, Molecular Biology, DNA
Abstract

We report here the complete genome sequences of 44 phages infecting Arthrobacter sp. strain ATCC 21022. These phages have double-stranded DNA genomes with sizes ranging from 15,680 to 70,707 bp and G+C contents from 45.1% to 68.5%. All three tail types (belonging to the families Siphoviridae , Myoviridae , and Podoviridae ) are represented.

Published
2018
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2. Genome Sequences of 12 Cluster AN Arthrobacter Phages

Author

J. Alfred Bonilla, Graham F. Hatfull, Deborah Jacobs-Sera, Welkin H. Pope, Melinda Harrison, Rebecca A. Garlena, Steven G. Cresawn, Julia Y. Lee-Soety, Tamarah L. Adair, Shantanu Bhatt, Karen K. Klyczek, Daniel A. Russell, and Charles A. Bowman

Subjects
0301 basic medicine, Strain atcc, Genetics, biology, viruses, Arthrobacter sp, biology.organism_classification, Genome, 03 medical and health sciences, 030104 developmental biology, Arthrobacter, Viruses, Cluster (physics), Molecular Biology
Abstract

Twelve siphoviral phages isolated using Arthrobacter sp. strain ATCC 21022 were sequenced. The phages all have relatively small genomes, ranging from 15,319 to 15,556 bp. All 12 phages are closely related to previously described cluster AN Arthrobacter phages.

Published
2017
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3. Complete Genome Sequences of Arthrobacter Phages Beans, Franzy, Jordan, Piccoletto, Shade, and Timinator

Author

Germán Rosas-Acosta, Charles A. Bowman, Julia Y. Lee-Soety, Daniel A. Russell, Deborah Jacobs-Sera, Graham F. Hatfull, Karen K. Klyczek, Welkin H. Pope, Melinda Harrison, Steven G. Cresawn, Rebecca A. Garlena, Tamarah L. Adair, and J. Alfred Bonilla

Subjects
0301 basic medicine, Genetics, biology, Arthrobacter sp, biology.organism_classification, Genome, 03 medical and health sciences, chemistry.chemical_compound, 030104 developmental biology, chemistry, Arthrobacter, Viruses, Botany, Molecular Biology, DNA
Abstract

We report here the genome sequences of six newly isolated bacteriophages infecting Arthrobacter sp. ATCC 21022. All six have myoviral morphologies and have double-stranded DNA genomes with circularly permuted ends. The six phages are closely related with average nucleotide identities of 73.4 to 93.0% across genomes lengths of 49,797 to 51,347 bp.

Published
2017
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4. Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages

Author

Filippa G. Bagnasco, Melinda Harrison, Garrett Finn, David Dunbar, Machika Kaku, Rahat M. Aziz, Rodney A. King, Marisa Egan, Nitish S. Chimalakonda, Hannah M. Kolev, Daniel R. Evans, Allen W. Karstens, Christopher M. McDaniel, Lee E. Hughes, Megan L. Archambault, Marie C. Pizzorno, Jennifer E. Menninger, Robert C. Benjamin, Emily M. Lehmann, Karen K. Klyczek, Jakob R. Yankauskas, Hannah McDonald, Amelia M. Schick, Josephine E. Minick, Deborah Jacobs-Sera, Jade Connor, Megan C. Hartwell, Kayla M. Robinson, Haley Broomell, Kaitlyn E. Wathen, Kelly C. Lynch, Julia Y. Lee-Soety, Victoria A. Rose, Emily L. Stowe, Vassie C. Ware, Daniel S. Thomas, Bobby L. Gaffney, Shawn C. London, Daniel A. Russell, Kathryn M. Hyduchak, Jonathan L. Weinstein, Yasmene M. Warrad, Christine Zhang, Zachary T. Vonberg, Sarah Ball, Lorianna Vanderveen, Christopher J. Blasi, Corrina Tender, Morgan P. Silva, Katelyn M. Pruett, Claire A. Rinehart, Trevor Cross, Allison R. Thompson, Jeremy W. Sieker, Carter N. Lantz, Carlos A. Guerrero Bustamante, Katherine Borst, Jessica A. Dahlke, William Casazza, Cassandra T. Ott, Sarah K. Pellerino, Kelly E. Garrigan, J. Alfred Bonilla, Zachary S. Brynell, Morgan E. Lamey, Aswathi E. Jacob, Kate Allen, Emma A. Sweet, Francis E. Mele, Sierra N. Miller, Dylan Chudoff, Ashley B. Bue, Julia Schlossman, Graham F. Hatfull, Margaret A. Kenna, Kevin Hong Chen, Conner B. Brown, Christopher R. Fratus, Quynh D. Vo, Martha Nkangabwa, Mary A. Braun, Sydney O. Burke, Natalie Barrett, Bryan C. Gibbon, Courtney T. Nabua, Catherine M. Mageeney, William J. Pinamont, Stephanie E. Simon, Porter T. Swartz, Milan Dolan, Rohan Varma, Temiloluwa O. Lawson, Ross T. Pirnie, Kevin J. Mathew, Caroline K. Napoli, Rebecca A. Garlena, Jessica E. Medrano, Bethany M. Deaton, Welkin H. Pope, Chrystal Thomas, Michael A. Goedde, Amal Farooq, Gabbi Rickstrew, Hannah L. Vaught, A. Javier Lopez, Noah A. Stueven, Amanda L. Kobokovich, Tamarah L. Adair, Elizabeth A. Oates, Jacqueline F. Wyper, Elizabeth Kriese, Victoria M. Schneider, Susheel K. Khetarpal, Emily L. Heckman, Abby K. Fahnestock, Emilee J. Plautz, Travis N. Mavrich, Amanda K. Staples, Jonathan S. Lapin, Danielle M. DeNigris, Katrina Terry, In Young Lee, Sai A. Konde, Chloe A. Sells, Jennifer Huang, Marissa M. Silvi, Tetyana Martynyuk, Katherine C. DeRuff, Isabelle L. Steed, Kyra N. Curtis, Sarah J. Degroote, Scott M. Lee, Patrick A. Rimple, C. Joel McManus, Abigail T. Sweetman, Julia A. Cautela, and Patricia Afram

Subjects
0301 basic medicine, viruses, lcsh:Medicine, Astronomical Sciences, Genome, Biochemistry, Nucleotide diversity, Bacteriophage, Database and Informatics Methods, Rhodococcus, Bacteriophages, lcsh:Science, Genetics, education.field_of_study, Viral Genomics, Multidisciplinary, biology, Genomics, Proteases, Genomic Databases, Celestial Objects, Enzymes, Actinobacteria, Viruses, Physical Sciences, Research Article, Population, Genome, Viral, Microbial Genomics, Research and Analysis Methods, Microbiology, 03 medical and health sciences, Lysogenic cycle, Virology, Arthrobacter, education, Genome size, Comparative genomics, Bacteria, lcsh:R, Organisms, Genetic Variation, Biology and Life Sciences, Computational Biology, Proteins, Comparative Genomics, biology.organism_classification, Genome Analysis, Galaxies, 030104 developmental biology, Biological Databases, Enzymology, lcsh:Q
Abstract

The vast bacteriophage population harbors an immense reservoir of genetic information. Almost 2000 phage genomes have been sequenced from phages infecting hosts in the phylum Actinobacteria, and analysis of these genomes reveals substantial diversity, pervasive mosaicism, and novel mechanisms for phage replication and lysogeny. Here, we describe the isolation and genomic characterization of 46 phages from environmental samples at various geographic locations in the U.S. infecting a single Arthrobacter sp. strain. These phages include representatives of all three virion morphologies, and Jasmine is the first sequenced podovirus of an actinobacterial host. The phages also span considerable sequence diversity, and can be grouped into 10 clusters according to their nucleotide diversity, and two singletons each with no close relatives. However, the clusters/singletons appear to be genomically well separated from each other, and relatively few genes are shared between clusters. Genome size varies from among the smallest of siphoviral phages (15,319 bp) to over 70 kbp, and G+C contents range from 45-68%, compared to 63.4% for the host genome. Although temperate phages are common among other actinobacterial hosts, these Arthrobacter phages are primarily lytic, and only the singleton Galaxy is likely temperate.

Published
2017

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