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The members of myeloblastosis transcription factor (MYB TF) family are involved in the regulation of biotic and abiotic stresses in plants. However, the role of MYB TF in phosphorus remobilization remains largely unexplored. In the present study, we show that an R2R3 type MYB transcription factor, MYB103, is involved in phosphorus (P) remobilization. MYB103 was remarkably induced by P deficiency in cabbage (Brassica oleracea var. capitata L.). As cabbage lacks the proper mutant for elucidating the mechanism of MYB103 in P deficiency, another member of the crucifer family, Arabidopsis thaliana was chosen for further study. The transcript of its homologue AtMYB103 was also elevated in response to P deficiency in A. thaliana, while disruption of AtMYB103 (myb103) exhibited increased sensitivity to P deficiency, accompanied with decreased tissue biomass and soluble P concentration. Furthermore, AtMYB103 was involved in the P reutilization from cell wall, as less P was released from the cell wall in myb103 than in wildtype, coinciding with the reduction of ethylene production. Taken together, our results uncover an important role of MYB103 in the P remobilization, presumably through ethylene signaling. [ABSTRACT FROM AUTHOR]

Maize ( Zea mays L.) yield is limited by the poor availability of inorganic phosphate (Pi) in many arable areas worldwide. Phosphorus use efficiency (PUE) is a complex multigene trait, with a single gene contributing only a small percentage to the phenotype. Transcription factors (TFs) are very important as a single TF frequently coordinates the expression of multiple genes in response to environmental signals. Previous studies have indicated that the TFs AtPHR1 and OsPHR2 play important roles in the regulation of plant phosphorus accumulation. However, little is known about the functions of PHR-like genes in maize. In this study, a member of the MYB-CC family encoding a 449-amino acid protein, ZmPHR1, was isolated. The ZmPHR1∷GFP fusion was localized in the nucleus, which indicates that ZmPHR1 is also a TF. Phylogenetic tree analysis revealed that ZmPHR1 belongs to the same subfamily of MYB-CCs as OsPHR1, OsPHR2 and AtPHR1. Transgenic Arabidopsis lines overexpressing ZmPHR1 were used to investigate the pleiotropic effects of this gene under low Pi conditions. Overexpression of ZmPHR1 led to the upregulation of multiple genes that regulate metabolism during Pi-starvation, which in turn resulted in an elevation in Pi content in shoots. Most notably, Arabidopsis overexpressing ZmPHR1 showed better growth under low-Pi conditions. The results presented in this study suggest that PUE could be improved through the manipulation of the TF ZmPHR1 in maize and possibly in other species under Pi-deficient conditions. [ABSTRACT FROM AUTHOR]

We surveyed the iron nutrition-responsive transcriptome of Chlamydomonas reinhardtii using RNA-Seq methodology. Presumed primary targets were identified in comparisons between visually asymptomatic iron-deficient versus iron-replete cells. This includes the known components of high-affinity iron uptake as well as candidates for distributive iron transport in C. reinhardtii. Comparison of growth-inhibited iron-limited versus iron-replete cells revealed changes in the expression of genes in chloroplastic oxidative stress response pathways, among hundreds of other genes. The output from the transcriptome was validated at multiple levels: by quantitative RT-PCR for assessing the data analysis pipeline, by quantitative proteomics for assessing the impact of changes in RNA abundance on the proteome, and by cross-species comparison for identifying conserved or universal response pathways. In addition, we assessed the functional importance of three target genes, VITAMIN C 2 (VTC2), MONODEHYDROASCORBATE REDUCTASE 1 (MDAR1), and CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 (CGLD27), by biochemistry or reverse genetics. VTC2 and MDAR1, which are key enzymes in de novo ascorbate synthesis and ascorbate recycling, respectively, are likely responsible for the 10-fold increase in ascorbate content of iron-limited cells. CGLD27/At5g67370 is a highly conserved, presumed chloroplast-localized pioneer protein and is important for growth of Arabidopsis thaliana in low iron. [ABSTRACT FROM AUTHOR]

A proper concentration and turnover of inorganic phosphate (P[sub i) is essential to maintain cellular processes. Consequently, plants have mechanisms to control P[sub i] homeostasis and to alleviate P[sub i] limitation. The MYB-related transcription factor, PHR1, is important for gene induction during P[sub i] starvation. PHR1 belongs to a family, characterised by the presence of a GARP- and a coiled coil domain. We propose that this family, with 15 members in Arabidopsis thaliana (L.) Heynh., be termed the GCC-family. In this study, transgenic plants overexpressing one member, GCC7, and a T-DNA knockout mutant, gcc7, are characterised. We find overexpressor plants to accumulate more P[sub i] in shoots, irrespective of the P[sub i] supply. Therefore, GCC7 was characterised in relation to P[sub i starvation. We conclude that GCC7 is not strictly required fora P-starvation response since the gcc7mutant respondstoP[sub i] limitation. However, overexpression of GCC7 strongly interferes with the P-starvation response, abolishing induction of several P-responsive genes including AT4, IPS1andseveral P-transportergenes, where as GCC7 does not directly interfere with the PHR1(GCC1) dependent regulation of miR399d. Thus GCC7 influences P-accumulation and P-dependent gene regulation, but GCC7 has a function entirely different from PHR1. [ABSTRACT FROM AUTHOR]

Inorganic phosphate (Pi) is an essential nutrient for plants, and the low bioavailability of Pi in soils is often a limitation to growth and development. Consequently, plants have evolved a range of regulatory mechanisms to adapt to phosphorus‐starvation in order to optimise uptake and assimilation of Pi. Recently, significant progress has been made in elucidating these mechanisms. The coordinated expression of a large number of genes is important for many of these adaptations. Several global expression studies using microarray analysis have been conducted in Arabidopsis thaliana. These studies provide a valuable basis for the identification of new regulatory genes and promoter elements to further the understanding of Pi‐dependent gene regulation. With focus on the Arabidopsis transcriptome, we extract common findings that point to new groups of putative regulators, including the NAC, MYB, ethylene response factor/APETALA2, zinc‐finger, WRKY and CCAAT‐binding families. With a number of new discoveries of regulatory elements, a complex regulatory network is emerging. Some regulatory elements, e.g. the transcription factor PHR1 and the microRNA (miRNA) miR399 and associated factors are well documented, yet not fully understood, whereas other suggested components need further characterisation. Here, we evaluate the contribution of the regulatory elements to the P‐responses and present a model comprising factors directly or indirectly involved in transcriptional regulation and the role of miRNAs as regulators and long‐distance signals. A striking feature is a series of feedback loops and parallel mechanisms that can modify and attenuate responses. We suggest that these mechanisms are instrumental in providing an accurate response and in keeping P‐homeostasis. [ABSTRACT FROM AUTHOR]

Expression of phosphate starvation inducible genes was studied during recovery from phosphate starvation of Arabidopsis thaliana. Genes analysed were ACP5 (encoding an acid phosphatase), RNS1 (encoding an RNase), At4 and IPS1 (both of unknown function), Pht1;7 and Pht2;1 (encoding phosphate transporters). Plants grown at limiting phosphate exhibited reduced growth rate and accumulated anthocyanins, soluble sugars, and starch. Re-supply of phosphate resulted in dramatic uptake of phosphate, increased growth rate and decreased levels of anthocyanins, soluble sugars, and starch in leaf tissue. In both shoots and roots re-supplied with Pi, transcript levels decreased rapidly, and first changes were observed within 30 min. These alterations in gene expression occurred before the content of carbohydrates decreased, indicating that transcriptional regulation was due to phosphate sensing, and not a secondary effect of carbon accumulation. The data reveal different response rates for individual genes and demonstrate that roots and shoots can differ with respect to both timing and genes responding. In general, the changes in transcriptional activity in roots preceded the changes in shoots. Furthermore, transcriptional regulation was observed in isolated roots and shoots. This implies that roots do not strictly require a signal from the shoot, and vice versa, in order to respond to phosphate starvation. [ABSTRACT FROM AUTHOR]

• Background Phosphorus (P) is an essential macronutrient for plants. Plants take up P as phosphate (Pi) from the soil solution. Since little Pi is available in most soils, P fertilizers are applied to crops. However, the use of P fertilizers is unsustainable and may cause pollution. Consequently, there is a need to develop more P-use-efficient (PUE) crops and precise methods to monitor crop P-status.• Scope Manipulating the expression of genes to improve the PUE of crops could reduce their P fertilizer requirement. This has stimulated research towards the identification of genes and signalling cascades involved in plant responses to P deficiency. Genes that respond to P deficiency can be grouped into ‘early’ genes that respond rapidly and often non-specifically to P deficiency, or ‘late’ genes that impact on the morphology, physiology or metabolism of plants upon prolonged P deficiency.• Summary The use of micro-array technology has allowed researchers to catalogue the genetic responses of plants to P deficiency. Genes whose expression is altered by P deficiency include various transcription factors, which are thought to coordinate plant responses to P deficiency, and other genes involved in P acquisition and tissue P economy. Several common cis-regulatory elements have been identified in the promoters of these genes, suggesting that their expression might be coordinated. It is suggested that knowledge of the genes whose expression changes in response to P deficiency might allow the development of crops with improved PUE, and could be used in diagnostic techniques to monitor P deficiency in crops either directly using ‘smart’ indicator plants or indirectly through transcript profiling. The development of crops with improved PUE and the adoption of diagnostic technology could reduce production costs, minimize the use of a non-renewable resource, reduce pollution and enhance biodiversity. [ABSTRACT FROM AUTHOR]

The effects of inorganic phosphate (Pi) deficiency on the expression of the UDP-glucose pyrophosphorylase (UGPase) gene (Ugp), involved in sucrose synthesis/metabolism, and on carbohydrate status were investigated in different tissues of Arabidopsis thaliana (L.) Heynh. For leaves, a decrease in internal Pi status caused by growth of plants on a medium lacking Pi (-P conditions) led to an increase in the overall content of glucose and starch, but had little effect on sucrose content. The Pi deficiency also led to an increased carbohydrate content in stems/flowers, but not in roots. The expression of Ugp was upregulated in both leaves and roots, but not in stems/flowers. The effects of Pi status on Ugp expression were confirmed using leaves of both pho1-2 and pho2-1 mutants of Arabidopsis (Pi-deficient and Pi-accumulating, respectively) and by feeding the leaves with d-mannose, which acts as a sink for Pi. The Pi-status-dependent changes in Ugp expression followed the same patterns as those of ApS, a gene encoding the small subunit of ADP-glucose pyrophosphorylase, a key enzyme of starch synthesis. The changes in Ugp mRNA levels, depending on internal Pi status, were generally correlated with changes in UGPase protein content and enzymatic activity. This was demonstrated both for wild-type plants grown under Pi-deficiency and for Pi mutants. The data suggest that, under Pi-deficiency, UGPase represents a transcriptionally regulated step in sucrose synthesis/metabolism, involved in homeostatic mechanisms readjusting the nutritional status of a plant under Pi-stress conditions. [ABSTRACT FROM AUTHOR]

The phosphate starvation response (PHR) protein family exhibits the MYB and coiled-coil domains. In plants, within the either 5′ untranslated regions (UTRs) or promoter regions of phosphate starvation-induced (PSI) genes are characteristic cis-regulatory elements, namely PHR1 binding sequence (P1BS). The most widely studied PHR protein family members, such as AtPHR1 in Arabidopsis thaliana (L.) and OsPHR2 in Oryza sativa (L.), may activate the gene expression of a broad range of PSI genes by binding to such elements in a phosphate (Pi) dependent manner. In Pi signaling, PHR transcription factors (TFs) can be selectively activated or deactivated by other proteins to execute the final step of signal transduction. Several new proteins have been associated with the AtPHR1/OsPHR2 signaling cascade in the last few years. While the PHR TF transcriptional role has been studied intensively, here we highlight the recent findings of upstream molecular components and other signaling pathways that may interfere with the PHR final mode of action in plants. Detailed information about transcriptional regulation of the AtPHR1 gene itself and its upstream molecular events has been reviewed. [ABSTRACT FROM AUTHOR]

Background: Phosphate (Pi) and Nitrogen (N) are essential macronutrients required for plant growth and development. In Arabidopsis thaliana (Arabidopsis), the transcription factor PHR1 acts as a Pi central regulator. PHL1 is a homolog of PHR1 and also plays a role in maintaining Pi homeostasis. In rice (Oryza sativa), OsPHR1–4 are the orthologs of PHR1 and have been implicated in regulating sensing and signaling cascades governing Pi homeostasis. Results: Here the role of OsPHR3 was examined in regulating the homeostasis of N under different Pi regimes. Deficiencies of different variants of N exerted attenuating effects on the relative expression levels of OsPHR3 in a tissue-specific manner. For the functional characterization of OsPHR3, its Tos17 insertion homozygous mutants i.e., osphr3–1, osphr3–2, and osphr3–3 were compared with the wild-type for various morphophysiological and molecular traits during vegetative (hydroponics with different regimes of N variants) and reproductive (pot soil) growth phases. During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3− and 15N-NH4+, concentrations of total N, NO3− and NH4+ in different tissues, and the relative expression levels of OsNRT1.1a, OsNRT2.4, OsAMT1;1, OsNia1 and OsNia2. The effects of the mutation in OsPHR3 was also explicit on the seed-set and grain yield during growth in a pot soil. Although Pi deficiency affected total N and NO3− concentration, the lateral root development and the relative expression levels of some of the NO3− and NH4+ transporter genes, its availability did not exert any notable regulatory influences on the traits governing N homeostasis. Conclusions: OsPHR3 plays a pivotal role in regulating the homeostasis of N independent of Pi availability. [ABSTRACT FROM AUTHOR]