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Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually, they reveal changes that are otherwise difficult to assess from ground-based surveys. This paper reviews the utility of a long-term (1984–present) annual aerial monitoring program for submersed aquatic vegetation (SAV) in Chesapeake Bay, its tidal tributaries, and nearby Atlantic coastal bays, USA. We present a series of applications that highlight the program’s importance in assessing anthropogenic impacts, gauging water quality status and trends, establishing and evaluating restoration goals, and understanding the impact of commercial fishing practices on benthic habitats. These examples demonstrate how periodically quantifying coverage of this important foundational habitat answers basic research questions locally, as well as globally, and provides essential information to resource managers. New technologies are enabling more frequent and accurate aerial surveys at greater spatial resolution and lower cost. These advances will support efforts to extend the applications described here to similar issues in other areas.

Susan Lynn Williams (1951–2018) was an exceptional marine ecologist whose research focused broadly on the ecology of benthic nearshore environments dominated by seagrasses, seaweeds, and coral reefs. She took an empirical approach founded in techniques of physiological ecology. Susan was committed to applying her research results to ocean management through outreach to decision-makers and resource managers. Susan’s career included research throughout the USA in tropical, temperate, and polar regions, but she specialized in tropical marine ecology. Susan’s scholarship, leadership, and friendship touched many people, leading to this multi-authored paper. Susan’s scholarship was multi-faceted, and she excelled in scientific discovery, integration of scientific results, application of science for conservation, and teaching, especially as a mentor to undergraduate and graduate students and postdoctoral scholars. Susan served in a variety of leadership positions throughout her career. She embodied all facets of leadership; leading by example, listening to others, committing to the “long haul,” maintaining trust, and creating a platform for all to shine. Susan was an important role model for women in science. Susan was also a loyal friend, maintaining friendships for many decades. Susan loved cooking and entertaining with friends. This paper provides an overview of the accomplishments of Susan in the broad categories of scholarship, leadership, and friendship.

Seagrass ecosystems are inherently dynamic, responding to environmental change across a range of scales. Habitat requirements of seagrass are well defined, but less is known about their ability to resist disturbance. Specific means of recovery after loss are particularly difficult to quantify. Here we assess the resistance and recovery capacity of 12 seagrass genera. We document four classic trajectories of degradation and recovery for seagrass ecosystems, illustrated with examples from around the world. Recovery can be rapid once conditions improve, but seagrass absence at landscape scales may persist for many decades, perpetuated by feedbacks and/or lack of seed or plant propagules to initiate recovery. It can be difficult to distinguish between slow recovery, recalcitrant degradation, and the need for a window of opportunity to trigger recovery. We propose a framework synthesizing how the spatial and temporal scales of both disturbance and seagrass response affect ecosystem trajectory and hence resilience.

New York Harbor is a large, iconic and complex body of water that has been extensively modified to support the development of a megacity. These modifications have affected the shorelines, water flow, water quality, habitats and living resources of the harbor. Changes in topography and bathymetry have altered the landscapes and seascapes of the region, largely to support an active shipping port and intense human settlement. New York Harbor has been transformed from a region dominated by marshy shorelines, extensive submersed oyster beds and obstructed entrances to the present-day harbor with hardened shorelines, dredged shipping channels and remnant oysters that are unsafe to consume. However, improvements in water quality, largely due to sewage treatment upgrades, combined with the natural flushing ability of the harbor, have served to help restore or improve the ecological resilience of New York Harbor. Social resilience of the region has been tested with both terrorist attacks and the widespread inundation associated with Superstorm Sandy. Both ecological and social resilience will need to be enhanced to sustain the future development of New York Harbor.

New York Harbor is a complex of interconnected waterways that have supported the rapid development of a thriving megacity and metropolitan region. The water quality of New York, a partner city in the World Harbour Project, is a reflection of the combined impacts of this metropolitan region. Water quality health and trends were assessed between 1996–2017in 9 different reporting regions using publicly available data. Analyses of New York Harbor water quality reveal strong persistent geographic gradients and long-term trends in improving water quality. Data was synthesized for five indicators throughout the New York harbor region including: total nitrogen (TN), total phosphorus (TP), dissolved oxygen (DO), chlorophyll a (chla), and water clarity (secchi disk depth). The health of the waterways surrounding New York City was evaluated and graded on a 0%–100% scale and displayed using a ’stoplight color scheme’. The best water quality in the region evaluated was in the area of the most exchange with the Atlantic Ocean in the Lower Bay near the harbor entrance. Conversely, the most degraded water quality was in the areas of lowest water exchange in dead end canals (Newtown Creek and Flushing Bay) and Jamaica Bay. The Hudson River, East River, Upper Bay, Newark Bay, and Raritan Bay had intermediate water quality. High nutrient levels (TN and TP) were observed throughout New York Harbor, but water clarity, DO and chla levels were variable. Overall, there were improving trends in many water quality parameters over the time period of our study, especially TN. Data used in this analysis can be used as a resource for environmental managers, educators and students to explore health of New York Harbor and its associated waterways. This analysis may be seen as a model for other important and threatened harbors and waterways including partner cities in the World Harbour Project by providing a comparable method for assessing and communicating water quality health.

The response of the marine macroalga Gracilaria edulis (Gmelin) Silva to nutrient pulses of varying magnitude was investigated to test its applicability as a marine bioindicator at two oligotrophic locations. After exposure to nutrient pulses, algal amino acid, tissue nitrogen, and chlorophyll a content were assessed relative to algae incubated under control conditions (no nutrient enrichment). The smallest nutrient pulse involved a nutrient enrichment experiment conducted within a coral atoll, whereas two larger pulses resulted from sewage discharge to a tropical coastal bay. After exposure to the smallest nutrient pulse (10 × ambient), only changes in macroalgal amino acid concentration and composition were detected (mainly as increases in citrulline). At 100 × ambient concentrations, increases in tissue % nitrogen of the macroalgae were detected, in addition to responses in amino acids. Macroalgae exposed to the highest nutrient pulse (1000 × ambient) responded with increased chlorophyll a, tissue nitrogen, and amino acids within the three day incubation period. In contrast to these algal responses, analytical water sampling techniques failed to detect elevated nutrients when nutrient pulses were not occurring. The responses of this algal bioindicator to variable nutrient pulses may provide a useful tool for investigating the source and geographical extent of nutrients entering oligotrophic coastal waters.

Guanabara Bay, a natural tropical embayment in Southeast Brazil adjacent to Rio de Janeiro, is important to the Brazilian economy as it provides areas for shipping, industry, recreation, and tourism. But commercial and residential urban development in the watershed results in water quality degradation. In Guanabara Bay, strong water quality gradients as a function of inputs and tidal flushing were evident. In the watershed, the urban and industrial areas degraded stream water quality, and the best water quality was in the upstream, rural areas. Steps have been initiated to collect or contain litter (ecoboats and ecobarriers) and reduce sewage discharge (sewage treatment plants). In spite of this, urban development continues to degrade Guanabara Bay ecosystem health. Large-scale international events hosted by Rio de Janeiro have brought widespread attention to Guanabara Bay pollution issues. Management actions have been identified to improve Guanabara Bay ecosystem health, including establishing a strong governance structure, restoring water quality in the rivers, bay and beaches, restoring habitats in Guanabara Bay and its watershed, and mitigating for climate change impacts. An ecosystem health report card was generated using monitoring data with stakeholder engagement for both Guanabara Bay and its watershed. The scientifically rigorous and transparent report card process can be used to track Guanabara Bay restoration progress.

Long-term non-linear ecosystem-scale changes in water quality and biotic communities in coastal lagoons have been associated with intensification of anthropogenic pressures. In light of incipient changes in Johnson Bay (an embayment of Chincoteague Bay, Maryland-Virginia, USA), examination of nitrogen sources was conducted through synoptic water quality monitoring, stable nitrogen isotope signatures (δ15N) of in situ bioindicators, and denitrification estimates. These data were placed in the context of long-term and broader spatial analyses. Despite various watershed protection efforts, multiyear summer time studies (2004–2007) suggested that high levels of terrestrially derived nutrients still enter Johnson Bay. Total nitrogen concentrations in Johnson Bay were 132% the concentrations in the broader Chincoteague Bay during the late 1970s (mean 2004–2007 was 40.0 – 73.2 μM). Comparing total nitrogen concentrations in Johnson Bay to St. Martin River (consistently the most eutrophic region of these coastal bays), Johnson Bay has increased from 62.5% to 82.5% of the concentrations in St. Martin River during the late 1970s. Though specific sources of nitrogen inputs have not yet been definitively identified, the long-term increase in total nitrogen concentrations occurred despite increased and continued conservation and protection measures. We suggest that investigating nutrient sources can reveal potentially ineffective nutrient policies and that this knowledge can be applied towards other coastal lagoons.

To achieve desired environmental outcomes, environmental condition and trends need to be rigorously measured and communicated to resource managers, scientists, and a broader general audience. However, there is often a disconnect between responsive ecosystem monitoring and decision making for strategic long-term management. This project demonstrates how historical monitoring data can be synthesized and used for future planning and decision making, thereby closing the management feedback cycle. This study linked disparate datasets, collected for a variety of purposes and across multiple temporal and spatial scales, in order to assess and quantify current habitat conditions. The results inform integrated resource management decision-making at Assateague Island National Seashore (Maryland and Virginia, USA) by using ecological reference conditions to identify monitoring needs, areas of high vulnerability, and areas with potential for improved management. The approach also provides a framework that can be applied in the future to assess the effectiveness of these management decisions on the condition of island habitats, and is a replicable demonstration of incorporating diverse monitoring datasets into an adaptive management cycle.

We analyzed trends in a 23-year period of water quality and biotic data for Chesapeake Bay. Indicators were used to detect trends of improving and worsening environmental health in 15 regions and 70 segments of the bay and to assess the estuarine ecosystem’s responses to reduced nutrient loading from point (i.e., sewage treatment facilities) and non-point (e.g., agricultural and urban land use) sources. Despite extensive restoration efforts, ecological health-related water quality (chlorophyll-a, dissolved oxygen, Secchi depth) and biotic (phytoplankton and benthic indices) metrics evaluated herein have generally shown little improvement (submerged aquatic vegetation was an exception), and water clarity and chlorophyll-a have considerably worsened since 1986. Nutrient and sediment inputs from higher-than-average annual flows after 1992 combined with those from highly developed Coastal Plain areas and compromised ecosystem resiliency are important factors responsible for worsening chlorophyll-a and Secchi depth trends in mesohaline and polyhaline zones from 1986 to 2008.

Chesapeake Bay supports a diverse assemblage of marine and freshwater species of submersed aquatic vegetation (SAV) whose broad distributions are generally constrained by salinity. An annual aerial SAV monitoring program and a bi-monthly to monthly water quality monitoring program have been conducted throughout Chesapeake Bay since 1984. We performed an analysis of SAV abundance and up to 22 environmental variables potentially influencing SAV growth and abundance (1984–2006). Historically, SAV abundance has changed dramatically in Chesapeake Bay, and since 1984, when SAV abundance was at historic low levels, SAV has exhibited complex changes including long-term (decadal) increases and decreases, as well as some large, single-year changes. Chesapeake Bay SAV was grouped into three broad-scale community-types based on salinity regime, each with their own distinct group of species, and detailed analyses were conducted on these three community-types as well as on seven distinct case-study areas spanning the three salinity regimes. Different trends in SAV abundance were evident in the different salinity regimes. SAV abundance has (a) continually increased in the low-salinity region; (b) increased initially in the medium-salinity region, followed by fluctuating abundances; and (c) increased initially in the high-salinity region, followed by a subsequent decline. In all areas, consistent negative correlations between measures of SAV abundance and nitrogen loads or concentrations suggest that meadows are responsive to changes in inputs of nitrogen. For smaller case-study areas, different trends in SAV abundance were also noted including correlations to water clarity in high-salinity case-study areas, but nitrogen was highly correlated in all areas. Current maximum SAV coverage for almost all areas remain below restoration targets, indicating that SAV abundance and associated ecosystem services are currently limited by continued poor water quality, and specifically high nutrient concentrations, within Chesapeake Bay. The nutrient reductions noted in some tributaries, which were highly correlated to increases in SAV abundance, suggest management activities have already contributed to SAV increases in some areas, but the strong negative correlation throughout the Chesapeake Bay between nitrogen and SAV abundance also suggests that further nutrient reductions will be necessary for SAV to attain or exceed restoration targets throughout the bay.

In an effort to better portray changing health conditions in Chesapeake Bay and support restoration efforts, a Bay Health Index (BHI) was developed to assess the ecological effects of nutrient and sediment loading on 15 regions of the estuary. Three water quality and three biological measures were combined to formulate the BHI. Water quality measures of chlorophyll-a, dissolved oxygen, and Secchi depth were averaged to create the Water Quality Index (WQI), and biological measures of the phytoplankton and benthic indices of biotic integrity (P-IBI and B-IBI, respectively) and the area of submerged aquatic vegetation (SAV) were averaged to create the Biotic Index (BI). The WQI and BI were subsequently averaged to give a BHI value representing ecological conditions over the growing season (i.e., March-October). Lower chlorophyll-a concentrations, higher dissolved oxygen concentrations, deeper Secchi depths, higher phytoplankton and benthic indices relative to ecological health-based thresholds, and more extensive SAV area relative to restoration goal areas, characterized the least-impaired regions. The WQI, P-IBI and BHI were significantly correlated with (1) regional river flow (r=-0.64, -0.57 and -0.49, respectively; p0.01), (2) nitrogen (N), phosphorus (P) and sediment loads (all positively correlated with flow), and (3) the sum of developed and agricultural land use (highest annual r(2)=0.86, 0.71 and 0.68, respectively) in most reporting regions, indicating that the BHI is strongly regulated by nutrient and sediment loads from these land uses. The BHI uses ecological health-based thresholds that give an accurate representation of the health conditions in Chesapeake Bay and was the basis for an annual, publicly released environmental report card that debuted in 2007.

In January 2003, the US Environmental Protection Agency sponsored a “roundtable discussion” to develop a consensus on the relationship between eutrophication and harmful algal blooms (HABs), specifically targeting those relationships for which management actions may be appropriate. Academic, federal, and state agency representatives were in attendance. The following seven statements were unanimously adopted by attendees based on review and analysis of current as well as pertinent previous data: 1) Degraded water quality from increased nutrient pollution promotes the development and persistence of many HABs and is one of the reasons for their expansion in the U.S. and the world; 2) The composition – not just the total quantity – of the nutrient pool impacts HABs; 3) High biomass blooms must have exogenous nutrients to be sustained; 4) Both chronic and episodic nutrient delivery promote HAB development; 5) Recently developed tools and techniques are already improving the detection of some HABs, and emerging technologies are rapidly advancing toward operational status for the prediction of HABs and their toxins; 6) Experimental studies are critical to further the understanding of the role of nutrients in HAB expression, and will strengthen prediction and mitigation of HABs; and 7) Management of nutrient inputs to the watershed can lead to significant reduction in HABs. Supporting evidence and pertinent examples for each consensus statement is provided herein.

An updated assessment of nutrient related impacts in US estuaries was completed in 2007. This assessment evaluates three components for each estuary: the influencing factors (e.g. land use, nutrient loads), the overall eutrophic condition (e.g. chlorophyll a, presence of nuisance/toxic algae and macroalgae, extent of dissolved oxygen problems, loss of submerged aquatic vegetation), and future outlook. Eutrophication is a widespread problem with 65% of assessed systems showing moderate to high level problems. The most impacted region was the mid-Atlantic. The majority of estuaries assessed, with the exception of North Atlantic systems (Cape Cod north to Maine), are highly influenced by human related activities that contribute to land-based nutrient loads. Conditions were predicted to worsen in 65% and to improve in 19% of the assessed estuaries in the future. Analysis of the extent of change from the early 1990s to the early 2000s, for those systems for which sufficient data were available, shows that conditions mostly remained the same (32 of 58 systems) though changes were observed in several smaller systems; 13 systems improved and 13 systems worsened. Chlorophyll a and HAB impacts have increased in the mid-Atlantic region, the only region with data adequate for comparison. These symptoms are more prevalent in systems with longer residence times, such as coastal lagoons. The successful restoration of seagrass in Tampa Bay is encouraging though future management to sustain the recovery will be difficult given expected population increases. This national assessment illustrates the need for coordinated and integrated action that balances management action, efficient monitoring to assess the effectiveness of the management, focused research, and a communication campaign aimed at engaging the broader community.

The human ecological footprint now extends to the entire globe, and human impacts are the dominant feature of many ecosystems, resulting in our current era being coined the ‘anthropocene’. This is particularly apparent in coastal ecosystems as human populations are increasing rapidly in coastal cities and the ecosystem services in these areas are rapidly being compromised. Science has historically progressed as a series of paradigm shifts and this paper reviews this history of paradigm shifts and makes the case that the next major paradigm shift will be directed at sustainability, resulting in a shift in scientific focus on solving rather than just studying our current environmental problems. Traditionally, science has been extremely effective at data acquisition and then successively less effective at translating this into information, knowledge and finally environmental problem solving. The currently required paradigm shift is to focus on environmental problem solving, filling gaps in knowledge, information and data only as required to solve a particular problem. A key element in turning this process around is better science communication between scientists, key stakeholders and the community. This will require more ‘science communicators’ who can use credibility, tenacity, creativity and virtue to effect solutions.

Coastal ecosystems including coral reefs, mangrove forests, seagrass meadows, and salt marshes are being lost at alarming rates, and increased scientific understanding of causes has failed to stem these losses. Coastal habitats receive contrasting research effort, with 60% of all of the published research carried out on coral reefs, compared to 11-14% of the records for each of salt marshes, mangrove forests, and seagrass meadows. In addition, these highly connected and interdependent coastal ecosystems receive widely contrasting media attention that is disproportional to their scientific attention. Seagrass ecosystems receive the least attention in the media (1.3% of the media reports) with greater attention on salt marshes (6.5%), considerably more attention on mangroves (20%), and a dominant focus on coral reefs, which are the subject of three in every four media reports on coastal ecosystems (72.5%). There are approximately tenfold lower reports on seagrass meadows in the media for every scientific paper published (ten), than the 130-150 media reports per scientific paper for mangroves and coral reefs. The lack of public awareness of losses of less charismatic ecosystems results in the continuation of detrimental practices and therefore contributes to continued declines of coastal ecosystems. More effective communication of scientific knowledge about these uncharismatic but ecologically important coastal habitats is required. Effective use of formal (e.g., school curricula, media) and informal (e.g., web) education avenues and an effective partnership between scientists and media communicators are essential to raise public awareness of issues, concerns, and solutions within coastal ecosystems. Only increased public understanding can ultimately inform and motivate effective management of these ecologically important coastal ecosystems. © 2008 Coastal and Estuarine Research Federation.

Seagrasses, marine flowering plants, are widely distributed along temperate and tropical coastlines of the world. Seagrasses have key ecological roles in coastal ecosystems and can form extensive meadows supporting high biodiversity. The global species diversity of seagrasses is low (< 60 species), but species can have ranges that extend for thousands of kilometers of coastline. Seagrass bioregions are defined here, based on species assemblages, species distributional ranges, and tropical and temperate influences. Six global bioregions are presented: four temperate and two tropical. The temperate bioregions include the Temperate North Atlantic, the Temperate North Pacific, the Mediterranean, and the Temperate Southern Oceans. The Temperate North Atlantic has low seagrass diversity, the major species being Zostera marina, typically occurring in estuaries and lagoons. The Temperate North Pacific has high seagrass diversity with Zostera spp. in estuaries and lagoons as well as Phyllospadix spp. in the surf zone. The Mediterranean region has clear water with vast meadows of moderate diversity of both temperate and tropical seagrasses, dominated by deep-growing Posidonia oceanica. The Temperate Southern Oceans bioregion includes the temperate southern coastlines of Australia, Africa and South America. Extensive meadows of low-to-high diversity temperate seagrasses are found in this bioregion, dominated by various species of Posidonia and Zostera. The tropical bioregions are the Tropical Atlantic and the Tropical Indo-Pacific, both supporting mega-herbivore grazers, including sea turtles and sirenia. The Tropical Atlantic bioregion has clear water with a high diversity of seagrasses on reefs and shallow banks, dominated by Thalassia testudinum. The vast Tropical Indo-Pacific has the highest seagrass diversity in the world, with as many as 14 species growing together on reef flats although seagrasses also occur in very deep waters. The global distribution of seagrass genera is remarkably consistent north and south of the equator; the northern and southern hemispheres share ten seagrass genera and only have one unique genus each. Some genera are much more speciose than others, with the genus Halophila having the most seagrass species. There are roughly the same number of temperate and tropical seagrass genera as well as species. The most widely distributed seagrass is Ruppia maritima, which occurs in tropical and temperate zones in a wide variety of habitats. Seagrass bioregions at the scale of ocean basins are identified based on species distributions which are supported by genetic patterns of diversity. Seagrass bioregions provide a useful framework for interpreting ecological, physiological and genetic results collected in specific locations or from particular species.

South–west Australia contains extensive seagrass meadows along 2,500 km of coastline from the shallow subtidal to 50+ m water depths, and in many of the 51 bar-built estuaries along the coast. There are geomorphological differences between the south and west coasts that result in different patterns of swell exposure influencing the processes that structure seagrass habitats. In this paper, ‘sheltered’, ‘exposed’ and ‘estuarine’ seagrass habitat types are defined for south–west Australia to synthesize processes influencing seagrass communities. Sheltered habitats in south–west Australia are characterized by high light, low to moderate water motion and sporadic disturbance from storms, making them ideal habitats for a diversity of seagrass assemblages. Exposed seagrass habitats are characterized by the presence of strong and consistent ocean swells (3–8 m), predominantly from the south or south–west and seagrasses exhibit a suite of adaptive traits to survive the effects of exposure to ocean swell and associated sand movement. These include morphological features such as heavy fiber reinforcement to strengthen the aboveground stems or leaves, deep vertical rhizomes and life history traits such as rapid growth and high seed set. Within estuarine habitats highly dynamic seagrass communities are the result of fluctuating annual cycles in temperature, light and salinity. Compared to global seagrass meadows, coastal south–west Australian seagrass habitats experience high light, low nutrients and high water movement. Despite these differences, similarities with other regions do exist and here we place the habitats of south–west Australia into a global context using comparative data. The wide array of morphology and life history traits displayed among seagrass species of south–west Australia are presented in a conceptual model including habitat type, physical stressors and seagrass responses. The combination of adaptations to the habitats and processes that define them make south–west Australia a region where there is an unusually high number of co-occurring seagrass species, the highest in the world for a temperate environment (19 species), and approaching the species diversity of many tropical environments. Linking aspects of seagrass habitat, physical aspects of the environment and seagrass life history provides a context for applying knowledge gained from seagrasses in south–west Australia to other coastal ecosystems throughout the world.

Human sewage and septic waste are significant sources of nutrient loading to many aquatic ecosystems. Ecologically relevant nitrogen sources can be traced by analyzing nitrogen stable isotope ratios (δ15N signatures) in aquatic plants. Elevated δ15N signatures can suggest increased uptake of nitrogen derived from human and/or animal waste. In the current study, Vallisneria americana, a freshwater angiosperm, was collected from several locations in Upper Saranac Lake, NY, USA. Samples were also collected from Lake George, NY and the Sassafras River, MD, USA. Plant material was analyzed for δ15N and % N; some samples were also analyzed for δ13C, % C, and % P. Results suggest that there is variation in septic inputs to Upper Saranac Lake, with some areas of the lake receiving more input than others. Results also show that increased watershed population density is correlated with elevated δ15N signatures of Vallisneria americana. Taken together, these results suggest that nitrogen stable isotope analysis of aquatic plant tissue is an effective method for assessing and monitoring septic inputs to freshwater ecosystems.

Subtropical estuaries have received comparatively little attention in the study of nutrient loading and subsequent nutrient processing relative to temperate estuaries. Australian estuaries are particularly susceptible to increased nutrient loading and eutrophication, as 75% of the population resides within 200 km of the coastline. We assessed the factors potentially limiting both biomass and production in one Australian estuary, Moreton Bay, through stoichiometric comparisons of nitrogen (N), phosphorus (P), silicon (Si), and carbon (C) concentrations, particulate compositions, and rates of uptake. Samples were collected over 3 seasons in 1997–1998 at stations located throughout the bay system, including one riverine endmember site. Concentrations of all dissolved nutrients, as well as particulate nutrients and chlorophyll, declined 10-fold to 100-fold from the impacted western embayments to the eastern, more oceanic-influenced regions of the bay during all seasons. For all seasons and all regions, both the dissolved nutrients and particulate biomass yielded N:P ratios

The east coast of the Yucatan Peninsula, Mexico, consists of highly permeable limestone, such that surface flow and rivers are absent in this region. Extensive underground cave systems connect sink holes (cenotes) to submarine springs (ojos de aqua), which vent into the seagrass meadows of the adjacent oligotrophic coastal lagoons. This study investigated the potential for these submarine springs to influence nutrient processes within seagrass meadows, by assessing nutrient status of Thalassia testudinum meadows in two contrasting coastal lagoons along the north eastern Yucatan peninsula. Tissue nutrient concentrations as well as δ15N values of T. testudinum were surveyed in the Puerto Morelos Reef Lagoon and the Nichupte Lagoon System, Cancun Hotel Zone, during an extended dry period and again following heavy rainfall. After a period of heavy rainfall, T. testudinum near submarine springs in Puerto Morelos Reef Lagoon had exceptionally high leaf tissue phosphorus concentrations of 0.38±0.06%. These submarine springs may have been a direct source of phosphorus and/or a source of iron to this very iron limited carbonate system. Thalassia testudinum nutrient concentrations suggest that nitrogen loading to the Nichupte Lagoon System is regionally high and has increased over the past decade (mean leaf N: 2.04% N in 1991 to 2.71% N in 2002). Nitrogen content in leaf tissue of T. testudinum was significantly higher within the poorly flushed Nichupte Lagoon System (2.93±0.12% N) than in the well-flushed Puerto Morelos Reef Lagoon (1.80±0.07% N). Stable isotope ratios of nitrogen suggest that this high and increasing nitrogen loading within the Nichupte Lagoon System is a result of wastewater nitrogen (δ15N 9.06±0.07 in northern Nichupte Lagoon System vs. 1.69±0.07 in Puerto Morelos Reef Lagoon).

Large blooms of the marine cyanobacterium Lyngbya majuscula in Moreton Bay, Australia (27 degrees 05'S, 153 degrees 08'E) have been re-occurring for several years. A bloom was studied in Deception Bay (Northern Moreton Bay) in detail over the period January-March 2000. In situ data loggers and field sampling characterised various environmental parameters before and during the L. majuscula bloom. Various ecophysiological experiments were conducted on L. majuscula collected in the field and transported to the laboratory, including short-term (2h) C-14 incorporation rates and long-term (7 days) pulse amplitude modulated (PAM) fluorometry assessments of photosynthetic capacity. The effects of L. majuscula on various seagrasses in the bloom region were also assessed with repeated biomass sampling. The bloom commenced in January 2000 following usual December rainfall events, water temperatures in excess of 24 degrees C and high light conditions. This bloom expanded rapidly from 0 to a maximum extent of 8 km(2) over 55 days with an average biomass of 210 g(dw)(-1) m(-2) in late February, followed by a rapid decline in early April. Seagrass biomass, especially Syringodium isoetifolium, was found to decline in areas of dense L. majuscula accumulation. Dissolved and total nutrient concentrations did not differ significantly (P > 0.05) preceding or during the bloom. However, water samples from creeks discharging into the study region indicated elevated concentrations of total iron (2.7-80.6 mu M) and dissolved organic carbon (2.5-24.7 mg L-1), associated with low pH values (3.8-6.7). C-14 incorporation rates by L. majuscula were significantly (P 0.05). These results suggest that the L. majuscula bloom may have been stimulated by bioavailable iron, perhaps complexed by dissolved organic carbon. The rapid bloom expansion observed may then have been sustained by additional inputs of nutrients (N and P) and iron through sediment efflux, stimulated by redox changes due to decomposing L. majuscula mats. (c) 2004 Elsevier B.V. All rights reserved.

Tissue samples of liver and blubber were salvaged from fifty-three dugong (Dugong dugon) carcasses stranded along the Queensland coast between 1996 and 2000. Liver tissue was analysed for a range of heavy metals and blubber samples were analysed for organochlorine compounds. Metal concentrations were similar in male and female animals and were generally highest in mature animals. Liver concentrations of arsenic, chromium, iron, lead, manganese, mercury and nickel in a number of individual animals were elevated in comparison to concentrations previously reported in Australian dugong. Dieldrin, DDT (and its breakdown products) and/or heptachlor epoxide were detected in 59% of dugong blubber samples. In general, concentrations of organochlorines were similar to those reported in dugong 20 years earlier, and were low in comparison to concentrations recorded from marine mammal tissue collected elsewhere in the world. With the exception of lead, the extent of carcass decomposition, the presence of disease or evidence of animal starvation prior to death did not significantly affect dugong tissue concentrations of metals or organochlorines. The results of the study suggest that bioaccumulation of metals and organochlorine compounds (other than dioxins) does not represent a significant risk to Great Barrier Reef dugong populations, particularly in the context of other pressures associated with coastal development and other anthropogenic activities.

The abundance and productivity of benthic microalgae in coral reef sediments are poorly known compared with other, more conspicuous (e.g. coral zooxanthellae, macroalgae) primary producers of coral reef habitats. A survey of the distribution, biomass, and productivity of benthic microalgae on a platform reef flat and in a cross-shelf transect in the southern Great Barrier Reef indicated that benthic microalgae are ubiquitous, abundant (up to 995.0 mg chlorophyll (chl) a m−2), and productive (up to 110 mg O2 m−2 h−1) components of the reef ecosystem. Concentrations of benthic microalgae, expressed as chlorophyll a per surface area, were approximately 100-fold greater than the integrated water column concentrations of microalgae throughout the region. Benthic microalgal biomass was greater on the shallow water platform reef than in the deeper waters of the cross-shelf transect. In both areas the benthic microalgal communities had a similar composition, dominated by pennate diatoms, dinoflagellates, and cyanobacteria. Benthic microalgal populations were potentially nutrient-limited, based on responses to nitrogen and phosphorus enrichments in short-term (7-day) microcosm experiments. Benthic microalgal productivity, measured by O2 evolution, indicated productive communities responsive to light and nutrient availability. The benthic microalgal concentrations observed (92–995 mg chl a m−2) were high relative to other reports, particularly compared with temperate regions. This abundance of productive plants in both reef and shelf sediments in the southern Great Barrier Reef suggests that benthic microalgae are key components of coral reef ecosystems.

While the remote-sensing community attempts to find measures of reef "health" able to be detected and mapped using satellite image data, internationally recognized field assessments are already in place to document benthic cover, among other parameters, as an indicator of coral reef status. Reef Check is one such program, designed in 1996 as a globally applicable, rapid, field-survey protocol for coral reef health monitoring by volunteer divers (Hodgson 1999). The protocol is designed to provide a measure of reef health based on indicator species or families for fish, invertebrates, and substrates. Data collected contribute to a global-scale database on coral reef status for use in management plans (Hodgson 1999). Today, over 5,000 trained volunteer divers are led by more than 160 scientists in surveys of 1,500 reefs in 60 countries. During the survey, they record substrate type directly under a measuring tape at 0.5-m intervals on 4· 20 m consecutive transects between 3- and 10-m depth (Hodgson and Liebler 2002). The Reef Check substrate classification scheme provides information on benthic habitats such as hard coral, dead coral, soft coral, fleshy algae, rock, rubble, sand, silt sponge, and other. This is the same type of information that remote-sensing scientists are often asked to extract from image data by coral reef scientists and managers. Reef Check programs are an important source of reef-health information, yet the data collected will always be point based, and extrapolation to non-surveyed areas will be required. Remotely sensed data can provide a spatially extensive survey if methods are developed to successfully link ground-survey observations, like those provided by Reef Check, with satellite or airborne images. Thus, the objectives of our project were (1) to determine whether Reef Check substrate classes could be successfully mapped with Landsat ETM+ (Enhanced Thematic Mapper Plus) image data, and (2) to determine whether Reef Check data that are currently collected globally may be used for training and assessing the accuracy of remotely sensed image classifications. We address our objectives using a case study in the Capricorn Bunker Group, southern Great Barrier Reef, Australia.

A combination of physical and chemical measurements and biological indicators identified nutrient impacts throughout an Australian subtropical river estuary. This was a balance of sewage inputs in the lower river and agricultural inputs in the mid-upper river, the combined influence being greater in the wet season due to greater agricultural surface runoff. Field sampling in the region was conducted at 6 sites within the river, over 5 surveys to encapsulate both wet and dry seasonal effects. Parameters assessed were tissue nitrogen (N) contents and σ15N signatures of mangroves and macroalgae, phytoplankton nutrient addition bioassays, and standard physical and chemical variables. Strong spatial (within river) and temporal (seasonal) variability was observed in all parameters. Poorest water quality was detected in the middle (agricultural) region of the river in the wet season attributable to large diffuse inputs in this region. Water quality towards the river mouth remained constant irrespective of season due to strong oceanic flushing. Mangrove and macroalgal tissue σ15N and %N proved a successful combination for discerning sewage and agricultural inputs. Elevated σ15N and %N represented sewage inputs, whereas low σ15N and elevated %N was indicative of agricultural inputs. Phytoplankton bioassays found the system to be primarily responsive to nutrient additions in the warmer wet season, with negligible responses observed in the cooler dry season. These results indicate that the Tweed River is sensitive to the different anthropogenic activities in its catchment and that each activity has a unique influence on receiving water quality.

Coral bleaching events have become more frequent and widespread, largely due to elevated sea surface temperatures. Global climate change could lead to increased variability of sea surface temperatures, through influences on climate systems, e.g. El Nino Southern Oscillation (ENSO). Field observations in 1999, following a strong ENSO, revealed that corals bleached in winter after unusually cold weather. To explore the basis for these observations, the photosynthetic responses of the coral species Montipora digitata Studer were investigated in a series of temperature and light experiments. Small replicate coral colonies were exposed to ecologically relevant lower temperatures for varying durations and under light regimes that ranged from darkness to full sunlight. Photosynthetic efficiency was analyzed using a pulse amplitude modulated (PAM) fluorometer (F-0, F-m, F-v/F-m), and chlorophyll a (chl a) content and symbiotic dinoflagellate density were analyzed with spectrophotometry and microscopy, respectively. Cold temperature stress had a negative impact on M digitata colonies indicated by decreased photosynthetic efficiency (F-v/F-m), loss of symbiotic dinoflagellates and changes in photosynthetic pigment concentrations. Corals in higher light regimes were more susceptible to cold temperature stress, Moderate cold stress resulted in photoacclimatory responses, but severe cold stress resulted in photodamage, bleaching and increased mortality. Responses to cold temperature stress of M digitata appeared similar to that observed in corals exposed to warmer than normal temperatures, suggesting a common mechanism. The results of this study suggest that corals and coral reefs may also be impacted by exposure to cold as well as warm temperature extremes as climate change occurs.

Understanding the ecological role of benthic microalgae, a highly productive component of coral reef ecosystems, requires information on their spatial distribution. The spatial extent of benthic microalgae on Heron Reef (southern Great Barrier Reef, Australia) was mapped using data from the Landsat 5 Thematic Mapper sensor, integrated with field measurements of sediment chlorophyll concentration and reflectance. Field-measured sediment chlorophyll concentrations, ranging from 23–1,153 mg chl a m–2, were classified into low, medium, and high concentration classes (1–170, 171–290, and >291 mg chl a m–2) using a K-means clustering algorithm. The mapping process assumed that areas in the Thematic Mapper image exhibiting similar reflectance levels in red and blue bands would correspond to areas of similar chlorophyll a levels. Regions of homogenous reflectance values corresponding to low, medium, and high chlorophyll levels were identified over the reef sediment zone by applying a standard image classification algorithm to the Thematic Mapper image. The resulting distribution map revealed large-scale (>1 km2) patterns in chlorophyll a levels throughout the sediment zone of Heron Reef. Reef-wide estimates of chlorophyll a distribution indicate that benthic microalgae may constitute up to 20% of the total benthic chlorophyll a at Heron Reef, and thus contribute significantly to total primary productivity on the reef.

The fate of N-15-nitrogen-enriched formulated feed fed to shrimp was traced through the food web in shallow, outdoor tank systems (1000 1) stocked with shrimp. Triplicate tanks containing shrimp water with and without sediment were used to identify the role of the natural biota in the water column and sediment in processing dietary nitrogen (N). A preliminary experiment demonstrated that N-15-nitrogen-enriched feed products could be detected in the food web. Based on this, a 15-day experiment was conducted. The ammonium (NH4+) pool in the water column became rapidly enriched (within one day) with N-15-nitrogen after shrimp were fed N-15-enriched feed. By day 15, 6% of the added N-15-nitrogen was in this fraction in the 'sediment' tanks compared with 0.4% in the 'no sediment' tanks. The particulate fraction in the water column, principally autotrophic nanoflagellates, accounted for 4-5% of the N-15-nitrogen fed to shrimp after one day. This increased to 16% in the 'no sediment' treatment, and decreased to 2% in the 'sediment' treatment by day 15. It appears that dietary N was more accessible to the phytoplankton community in the absence of sediment. The difference is possibly because a proportion of the dietary N was buried in the sediment in the 'sediment' treatment, making it unavailable to the phytoplankton. Alternatively, the dietary N was retained in the NH4+ pool in the water column since phytoplankton growth, and hence, N utilization was lower in the 'sediment' treatment. The lower growth of phytoplankton in the 'sediment' treatment appeared to be related to higher turbidity, and hence, lower light availability for growth. The percentage N-15-nitrogen detected in the sediment was only 6% despite the high capacity for sedimentation of the large biomass of plankton detritus and shrimp waste. This suggests rapid remineralization of organic waste by the microbial community in the sediment resulting in diffusion of inorganic N sources into the water column. It is likely that most of the dietary N will ultimately be removed from the tank system by water discharges. Our study showed that N-15-nitrogen derived from aquaculture feed can be processed by the microbial community in outdoor aquaculture systems and provides a method for determining the effect of dietary N on ecosystems. However, a significant amount of the dietary N was not retained by the natural biota and is likely to be present in the soluble organic fraction. (C) 2002 Elsevier Science B.V. All rights reserved.

A long-term experiment was conducted to compare the effects of flowing and still water on growth, and the relationship between water flow and nutrients, in Aponogeton elongatus, a submerged aquatic macrophyte. A. elongatus plants were grown for 23 weeks with three levels of nutrition (0, 0.5 and 1g Osmocote Plus® fertiliser pot−1) in aquaria containing stirred or unstirred water. Fertilized plants grew much better than non-fertilized. The highest fertilizer level produced 29% wider leaves and 58% higher total dry weight in stirred water. Stirred water increased leaf area by 40% and tuber size by 81%, but only with the highest level of nutrition. These results suggest that this plant depends on its roots for mineral uptake, rather than from the open water, and the major limitation to growth in still water is the supply of dissolved inorganic carbon. It was the combined effects of nutrient availability and stirring that produced the strongest response in plant growth, morphology and composition. This study provides some explanation for the observations of others that these plants grow best in creeks or river systems with permanently flowing water.

Current shrimp pond management practices generally result in elevated concentrations of nutrients, suspended solids, bacteria and phytoplankton compared with the influent water. Concerns about adverse environmental impacts caused by discharging pond effluent directly into adjacent waterways have prompted the search for cost-effective methods of effluent treatment. One potential method of effluent treatment is the use of ponds or raceways stocked with plants or animals that act as natural biofilters by removing waste nutrients. In addition to improving effluent water quality prior to discharge, the use of natural biofilters provides a method for capturing otherwise wasted nutrients. This study examined the potential of the native oyster, Saccostrea commercialis (Iredale and Roughley) and macroalgae, Gracilaria edulis (Gmelin) Silva to improve effluent water quality from a commercial Penaeus japonicus (Bate) shrimp farm, A system of raceways was constructed to permit recirculation of the effluent through the oysters to maximize the filtration of bacteria, phytoplankton and total suspended solids. A series of experiments was conducted to test the ability of oysters and macroalgae to improve effluent water quality in a flow-through system compared with a recirculating system. In the flow-through system, oysters reduced the concentration of bacteria to 35% of the initial concentration, chlorophyll a to 39%, total particulates (2.28-35.2 mum) to 29%, total nitrogen to 66% and total phosphorus to 56%. Under the recirculating flow regime, the ability of the oysters to improve water quality was significantly enhanced. After four circuits, total bacterial numbers were reduced to 12%, chlorophyll a to 4%, and total suspended solids to 16%. Efforts to increase biofiltration by adding additional layers of oyster trays and macroalgae-filled mesh bags resulted in fouling of the lower layers causing the death of oysters and senescence of macroalgae. Supplementary laboratory experiments were designed to examine the effects of high effluent concentrations of suspended particulates on the growth and condition of oysters and macroalgae. The results demonstrated that high concentrations of particulates inhibited growth and reduced the condition of oysters and macroalgae. Allowing the effluent to settle before biofiltration improved growth and reduced signs of stress in the oysters and macroalgae. A settling time of 6 h reduced particulates to a level that prevented fouling of the oysters and macroalgae.

Viruses are recognized as ubiquitous components of marine ecosystems; however, there has been limited study of viral abundance and its ecological role in sediments. Viral abundance was determined in both the water column and sediments of a eutrophic (Brisbane River/Moreton Bay; 278259S, 153859E) and oligotrophic (Noosa River; 268159S, 153809E) estuary in subtropical Queensland, Australia. Viruses, bacteria, and microalgae from both water column and extracted sediment samples were enumerated using SYBR Green I staining and epifluorescence microscopy. Sediment viral abundance ranged from 10 7 to 10 9 particles cm 23 of sediment, bacterial abundance ranged from 10 7 to 10 8 cells cm 23 of sediment, and microalgal abundance ranged from 10 4 to 10 5 cells cm 23 sediment. Pelagic abundances for all microorganisms were 10‐1,000-fold lower than sediment abundances. Correlations between viral abundances and suspended solids suggest that viruses sorbed to suspended material in the water column may settle out and contribute to the benthic viral population. Virus production was measured by a time course increase of viral abundance in seawater using a dilution technique. Virus production was highest in eutrophic waters of the Brisbane River, and addition of inorganic nutrients (NO 1 NH 1 PO 1 SiO3) stimulated viral production 21 32 34 4 rates at all stations by 14‐52% above ambient, suggesting that inorganic nutrient availability may play a key role in aquatic viral abundance.

Increased nitrogen loading has been implicated in eutrophication occurrences worldwide. Much of this loading is attributable to the growing human population along the world's coastlines. A significant component of this nitrogen input is from sewage effluent, and delineation of the distribution and biological impact of sewage-derived nitrogen is becoming increasingly important. Here, we show a technique that identifies the source, extent and fate of biologically available sewage nitrogen in coastal marine ecosystem. This method is based on the uptake of sewage nitrogen by marine plants and subsequent analysis of the sewage signature (elevated delta N-15) in plant tissues. Spatial analysis is used to create maps of delta N-15 and establish coefficient of variation estimates of the mapped values. We show elevated delta N-15 levels in marine plants near sewage outfalls in Moreton Bay, Australia, a semi-enclosed bay receiving multiple sewage inputs. These maps of sewage nitrogen distribution are being used to direct nutrient reduction strategies in the region and will assist in monitoring the effectiveness of environmental protection measures. (C) 2001 Elsevier Science Ltd. All rights reserved.

Effluent water from shrimp ponds typically contains elevated concentrations of dissolved nutrients and suspended particulates compared to influent water. Attempts to improve effluent water quality using filter feeding bivalves and macroalgae to reduce nutrients have previously been hampered by the high concentration of clay particles typically found in untreated pond effluent. These particles inhibit feeding in bivalves and reduce photosynthesis in macroalgae by increasing effluent turbidity. In a small-scale laboratory study, the effectiveness of a three-stage effluent treatment system was investigated. In the first stage, reduction in particle concentration occurred through natural sedimentation. In the second stage, filtration by the Sydney rock oyster, . Saccostrea commercialis Iredale and Roughley , further reduced the concentration of suspended particulates, including inorganic particles, phytoplankton, bacteria, and their associated nutrients. .

Despite evidence linking shrimp farming to several cases of environmental degradation, there remains a lack of ecologically meaningful information about the impacts of effluent on receiving waters. The aim of this study was to determine the biological impact of shrimp farm effluent, and to compare and distinguish its impacts from treated sewage effluent. Analyses included standard water quality/sediment parameters, as well as biological indicators including tissue nitrogen (N) content, stable isotope ratio of nitrogen (delta N-15) and amino acid composition of inhabitant seagrasses, mangroves and macroalgae. The study area consisted of two tidal creeks, one receiving effluent from a sewage treatment plant and the other from an intensive shrimp farm. The creeks discharged into the western side of Moreton Bay, a sub-tropical coastal embayment on the east coast of Australia. Characterization of water quality revealed significant differences between the creeks, and with unimpacted eastern Moreton Bay. The sewage creek had higher concentrations of dissolved nutrients (predominantly NO3-/NO2- and PO43-, compared to NH4+ in the shrimp creek). In contrast, the shrimp creek was more turbid and had higher phytoplankton productivity. Beyond 750 m from the creek mouths, water quality parameters were indistinguishable from eastern Moreton Bay values. Biological indicators detected significant impacts up to 4 km beyond the creek mouths (reference site). Elevated plant delta N-15 values ranged from 10.4-19.6 parts per thousand at the site of sewage discharge to 2.9-4.5 parts per thousand at the reference site. The free amino acid concentration and composition of seagrass and macroalgae was used to distinguish between the uptake of sewage and shrimp derived N. Proline (seagrass) and serine (macroalgae) were high in sewage impacted plants and glutamine (seagrass) and alanine (macroalgae) were high in plants impacted by shrimp effluent. The delta N-15 isotopic signatures and free amino acid composition of inhabitant flora indicated that sewage N extended further from the creek mouths than shrimp N. The combination of physical/chemical and biological indicators used in this study was effective in distinguishing the composition and subsequent impacts of aquaculture and sewage effluent on the receiving waters. (C) 2001 Academic Press.

Expansive blooms of the toxic cyanobacterium Lyngbya majuscula were observed in 2 shallow water regions of Moreton Bay, Australia. The rapid bloom decline (8 to

Marine viruses have been shown to affect phytoplankton productivity; however, there are no reports on the effect of viruses on benthic microalgae (microphytobenthos). Hence, this study investigated the effects of elevated concentrations of virus-like particles on the photosynthetic physiology and community composition of benthic microalgae and phytoplankton. Virus populations were collected near the sediment surface and concentrated by tangential flow ultrafiltration, and the concentrate was added to benthic and water column samples that were obtained along a eutrophication gradient in the Brisbane River/Moreton Bay estuary, Australia. Photosynthetic and community responses of benthic microalgae, phytoplankton and bacteria were monitored over 7 d in aquaria and in situ. Benthic microalgal communities responded to viral enrichment in both eutrophic and oligotrophic sediments. In eutrophic sediments, Euglenophytes (Euglena sp.) and bacteria decreased in abundance by 20 to 60 and 26 to 66%, respectively, from seawater controls. In oligotrophic sediments, bacteria decreased in abundance by 30 to 42% from seawater controls but the dinoflagellate Gymnodinium sp. increased in abundance by 270 to 3600% from seawater controls, The increased abundance of Gymnodinium sp. may be related to increased availability of dissolved organic matter released from lysed bacteria. Increased (140 to 190% from seawater controls) initial chlorophyll a fluorescence measured with a pulse-amplitude modulated fluorometer was observed in eutrophic benthic microalgal incubations following virus enrichment, consistent with photosystem II damage. Virus enrichment in oligotrophic water significantly stimulated carbon fixation rates, perhaps due to increased nutrient availability by bacterial lysis. The interpretation of data from virus amendment experiments is difficult due to potential interaction with unidentified bioactive compounds within seawater concentrates. However, these results show that viruses are capable of influencing microbial dynamics in sediments.

Trace metal run-off associated with urban and industrial development poses potential threats to seagrasses in adjacent coastal ecosystems, Seagrass from the largest urban (Moreton Bay) and industrial (Port Curtis) coastal regions in Queensland, Australia were assessed for metal concentrations of iron (Fe), aluminium (Al), zinc (Zn), chromium (Cr) and copper (Cu), Trace metal concentrations in seagrass (Zostera capricorni) leaf and root-rhizome tissue had the following overall trend: [Fe] > [Al] > [Zn] > [Cr] > [Cu]. Rainfall events and anthropogenic disturbances appeared to influence metal concentrations in seagrasses with the exception of Al, which does not appear to bioaccumulate, In laboratory experiments, five seagrass species (Halophila ovalis, H. spinulosa, Halodule uninervis, Z. capricorni, Cymodocea serrulata) were incubated with iron (1 mg Fe l(-1)) and copper (1 mg Cu l(-1)) and responses assessed by changes in PSII photochemical efficiency (Fv/Fm), free amino acid content and leaf/root-rhizome metal accumulation. Iron addition experiments only affected Halophila spp, while copper additions affected other seagrass species as well, Trace metal contamination of seagrasses could have ramifications for associated trophic assemblages through metal transfer and seagrass loss, The use of photosystem II photochemical efficiency as well as amino acid concentrations and composition proved to be useful sublethal indicators of trace metal toxicity in seagrasses. (C) 2000 Published by Elsevier Science Ltd.

The effect of the seagrass Zostera capricorni on sediment microbial processes was studied in a tank experiment, where vegetated and unvegetated control sedunents were incubated in 10 and 50% of incident light. Leaf and root-rhizome biomass, shoot density, and leaf productivity were signif- icantly higher when plants were incubated in 50 % than in 10% of incident light. Nitrogen fixation, sul- phate reduction, and urea turnover in the Z. capricorni vegetated sediment were higher in the 50 % than in the 10% light treatment and higher in the vegetated than in the unvegetated sediment. The stimulation of microbial processes in the Z, capricorni vegetated sedunent took place in the rhizo- sphere, where nitrogen fixation and sulphate reduction in particular were stimulated. The sediment studies were supplemented by measurements of nitrogen fixation, sulphate reduction, and urea turnover by microorganisms associated with the roots and rhizomes of Z, capricorni. The rates of nitro- gen fixation and sulphate reduction associated with root-rhizomes were up to 40- and 7-fold higher, respectively, than the highest respective sediment rates, whereas the root-rhlzome associated urea turnover was lower than sediment rates. Nitrogen fixation and sulphate reduction associated with root- rhizomes could account for up to 39 and 4%, respectively, of the depth-integrated sediment rates. Nitrogen fixed by microorganisms associated with root-rhizomes could supply up to 65 % of the nitro- gen needed for plant growth. Further, it was estimated that 8 to 18% of the carbon fixed by Z. capri- corni was released to the sediment by the roots and rhizomes. Urea turnover was suggested to be an important intermediate in the gross production of ammonium, and a low net production of ammonium indicated rapid internal nitrogen cycling within the sediment.

Pulsed turbidity events caused by factors such as flooding rivers have the potential to seriously impact seagrass communities by depriving the plants of all available light. The effects of light deprivation was investigated on the survival, morphology and physiology of the tropical seagrasses Halodule pinifolia and Halophila ovalis growing in the South-East Gulf of Carpentaria, Australia, a region where pulsed flood events are common. Additionally, physiological and morphological responses to light availability along natural gradients were examined. Responses to both experimental and natural light gradients were investigated for their potential use as indicators of impending seagrass loss during pulsed turbidity events. H. pinifolia was deprived of light for 80 days using in situ shade screens and the following parameters measured at three depths and under the shade screens: biomass, shoot density, canopy height, amino acid content, chlorophyll content, δ13C signature, %C and sugar concentration. The quantity of light was extremely variable, with mean daily irradiances between 9–12 mol photons m−2 day−1, and a range of 0.05–42 mol photons m−2 day−1. H. pinifolia leaf amino acid content increased with increased water depth (from 8 to 18 μmol g fresh wt.), chlorophyll a to b ratio decreased (from 2.4 to 2.1) and δ13C values became more negative (from −9 to −12). H. ovalis displayed little tolerance to light deprivation, with plant death occurring after 38 days in the dark. H. pinifolia showed a high degree of tolerance to light deprivation with no biomass loss before day 38 and complete die-off predicted after 100 days. Shoot density, biomass and canopy height all declined after 38 days. Physiological parameters that responded significantly to the light deprivation were the amino acids which increased (from 20 to 80 μmol g fresh wt.), the chlorophyll a to b ratio which decreased (from 2.5 to 2.1) and the values which became more negative (from −9 to −10). Changes in leaf physiology (e.g. amino acid content, chlorophyll content and δ13C) occurred before morphological changes (e.g. biomass, shoot density, canopy height) or die-off, and were thus considered to be potential indicators of impending seagrass die-off during light deprivation. In conclusion, only long duration (>38 days) pulsed turbidity events would have a detrimental impact on H. pinifolia growing in the Gulf of Carpentaria and that by assessing specific physiological responses, seagrass loss during pulsed turbidity events can predicted.

Survival and recovery of the seagrass Halophila ovalis (R.Br.) Hook during and after light deprivation was investigated to assist in the interpretation of recent losses of Halophila spp. in Queensland, Australia. Light deprivation experiments were conducted in outdoor aquaria and in situ at two water depths. Halophila ovalis plants were deprived of light for a maximum of 30 days, and recovery processes were investigated for up to 18 days following 15 days of light deprivation. Measurements of H. ovalis biomass, storage carbohydrate concentrations, chlorophyll a+b concentrations, stable carbon isotopes ratios (δ13C) and chlorophyll a fluorescence parameters (F0, Fm and Fv/Fm) were made during and at the end of the light deprivation and recovery periods. Biomass declined after 3–6 days in the dark and complete plant death occurred after 30 days. During the recovery period, biomass continued to decline for a short duration of time before stabilising. Sugar concentrations declined rapidly for the first 2 days of light deprivation before stabilising, then increased rapidly during the recovery period. Chlorophyll a+b concentrations were sensitive to very small differences in light availability: concentration decreased in total darkness, remained unchanged at 0.1% of surface irradiance and increased at 0.5% of surface irradiance. Photochemical efficiency of photosystem II (Fv/Fm) remained unchanged during the light deprivation and recovery periods. The lack of response in δ13C during light deprivation indicated the cessation of carbon fixation. Decreased sugar utilisation after 2 days of light deprivation indicated a reduction in respiration and growth. Starch concentrations did not change during light deprivation, suggesting the inhibition of starch utilisation by anaerobic conditions within the plant. Plant death after 30 days was notably faster than previously reported for other species of seagrass. The rapid die-off may be due to a shortage of available carbohydrates or due to a build-up of the phytotoxic end products of anaerobic respiration. Overall, H. ovalis has a very limited tolerance to light deprivation when compared to larger species of seagrass. Consequently, the persistence of this species in coastal marine environments may be dependent upon the occurrence and duration of transient light deprivation events.

Declines in seagrass biomass and growth have been widely reported in response to anthropogenic impacts. In contrast, the distribution and biomass of seagrass in the carbonate sediment around Green Island reef, part of Australia's Great Barrier Reef (GBR) has measurably increased during the past 50 yr, possibly due to increases in the availability of nutrients from local and regional anthropogenic sources. Using historical aerial photography, increases in seagrass distribution at Green Island have been mapped. The growth, morphological and physiological responses of 2 seagrass species (Halodule uninervis and Syringodium isoetifolium) to elevated sediment nitrogen (N; 100x control) and/or phosphorus (P; 10x control) were measured to investigate whether increased nutrients could account for the observed increase in distribution. Increases in the growth rate, amino acid composition and tissue nutrient content of both species occurred in response to elevated sediment N, but not P. Concentrations of the N-rich amino acids asparagine and glutamine increased 3- to 100-fold in seagrass leaves from N treatments. The δN values of leaves decreased in response to additions of nitrogen, probably due to increased discrimination against the N isotope, because N availability was surplus to demand. The low δN value of seagrasses in the Green Island back reef suggests that their primary source of N is either from N fixation or fertilisers and that the N from sewage is not a large component of their N budget. This study is the first to demonstrate N, rather than P, as the primary limiting nutrient for growth of seagrass in carbonate sediments and supports the hypothesis that the increase in the seagrass distribution and biomass at Green island was caused by an increase in nutrient availability. We also hypothesise that seagrass distribution and biomass in many regions of the GBR may be limited by nutrients and that the lack of substantial seagrass meadows in the southern GBR could be due to these reefs receiving less nutrients from the mainland.

Assessments of photosynthetic activity in marine plants can now be made in situ using a newly developed, submersible, pulse-amplitude modulated (PAM) fluorometer: Diving-PAM. PAM fluorometry provides a measure of chlorophyll a fluorescence using rapid-light curves in which the electron-transport rate can be determined for plants exposed to ambient light conditions. This technique was used to compare the photosynthetic responses of seagrasses near Rottnest Island, Western Australia. Several fluorescence parameters were measured as a function of time of day and water depth; electron-transport rate (ETR), quantum yield, photochemical quenching and non-photochemical quenching and Photosystem II (PSII) photochemical efficiency (Fv:Fm ratio) were measured. Results indicate that recent light-history plays a crucial role in seagrass photosynthetic responses. Maximum ETR of Posidonia australis, Amphibolis antarctica and Halophila ovalis is influenced by the irradiance during the diurnal cycle, with low rates at dawn and dusk (

Seagrasses, marine angiosperms with high rates of primary productivity, are often limited by the supply of nutrients, particularly nitrogen (N) and phosphorus (P). We investigated growth and physiological responses of three seagrass species (Halodule uninervis (Forsk.), Zostera capricorni Aschers and Cymodocea serrulata (r.Br.) Aschers) to elevated sediment N (100 × control) and/or P (10 × control) in adjacent monospecific beds over a 3 month period from spring to early summer. Each species exhibited different growth and biomass responses to both N and P additions. Halodule uninervis growth and biomass increased in response to N and N + P additions, indicative of exclusive N limitation of growth. In contrast, growth and biomass of Z. capricorni increased in response to N + P additions only, indicative of balanced N and P limitation. Cymodocea serrulata growth and biomass were not affected by any of the nutrient additions. Physiological characteristics (amino acid composition, tissue nutrient content, δ 15N) of all three seagrass species responded to N additions (+ N and N + P). Total amino acid content of seagrass leaves increased by 2 to 4 fold in N additions compared with controls. Concentrations of the N-rich amino acids, glutamine and asparagine, increased by 10–1000 fold in N additions, suggesting that these amino acids may be a metabolic storage for N. Tissue N content of leaves. roots and rhizomes increased and δ 15N of the leaves decreased in response to N additions. Although seagrass growth and biomass responses to nutrient additions were species specific, metabolic responses were similar for all species. This suggests physiological characteristics of seagrasses are useful for identifying saturating nutrient supply to an environment, but should not be used to determine whether nutrient availability is limiting the seagrass growth rate.

The use of macroalgae as biological indicators of dissolved nutrient source and availability in the water column was investigated. Total tissue nitrogen (N) content, pigments, and amino acids of the red alga Gracilaria edulis (Gmelin) Silva were compared to N source and availability in laboratory and field incubations to identify responses that would serve as bioindicators of N. Field-collected algae were preincubated (6–8 wk) in low-nutrient seawater to deplete their luxury reserves ofN. Incubations were then conducted for periods of 3 d in laboratory aquaria (N-spiked seawater) and in the field using macroalgal incubation chambers. After incubation in different N sources (NH4+, NO3−, and urea) in laboratory aquaria, photosynthetic pigments (phycoerythrin and chlorophyll a) and total tissue N increased, in response to increasing [NH4+] but not to [NO3−] or [urea]. Incubation in two ranges of [NH4+], one from 0 to 80 μM and the other from 0 to 800 μM, in laboratory aquaria increased the total amino acid pool. Citrulline concentrations were the most responsive to [NH4+] (r2= 0. 84). NH4+ source treatments produced increases in citrulline, phenylalanine, serine, and free NH4+ and decreases in alanine; NO3− treatments produced increases in glutamic acid, citrulline, and alanine; and urea treatments produced increases in free NH4+ and decreases in phenylalanine and serine. The observed variations in amino acid content facilitated the development of an index for each N source based on relative concentrations of various amino acids (i. e. metabolic profiling). Gracilaria edulis was incubated along a field N gradient in the Brisbane River (three sites) and Moreton Bay (four sites), Queensland, Australia. Both phycoerythrin and tissue N appeared to respond equally to NH4+ and NO3− availability in the field. N source indices, based on amino acid concentration, were effective predictors of both [NH4+] and [NO3−] over a wide range of concentrations along the field gradient. Macroalgal physiological responses, particularly amino acid content, to changes in source and availability of N appear to be useful as sensitive bioindicators of N.

Five seagrass species [Halophila ovalis (R.Br) Hook. f., Halodule uninervis (Forsk.) Aschers., Zostera capricorni Aschers., Cymodocea serrulata (R.Br) Aschers. (ed.) and Syringodium isoetifolium (Aschers.) Dandy] from Moreton Bay, Australia, were grown under increased (+25%) and ambient levels of ultraviolet (UV) radiation and photosynthetically active radiation (PAR), and various morphological and physiological responses were examined. Leaf fluorescence ratio (variable:maximum fluorescence) in conjunction with xanthophyll pigment content (violaxanthin, antheraxanthin and zeaxanthin) were used as a measure of photosynthetic efficiency. In addition, absorbance in the UV spectrum, chlorophyll content and chloroplast density were used as indicators of photosynthetic capacity. The seagrass species examined had varying degrees of sensitivity to UV radiation. Halophila ovalis and Halodule uninervis were the most sensitive species, exhibiting the largest decrease in photosynthetic efficiency and chloroplast density and the smallest increase in UV-blocking pigments in response to UV radiation. The more UV-tolerant species, Z. capricorni, C. serrulata and S. isoetifolium, were only significantly affected by increased levels of UV radiation, showing a gradual decline in photosynthetic efficiency and chloroplast density and the largest increases in UV-blocking pigment. UV sensitivity corresponded with leaf morphology, with thicker leaves (as in Z. capricorni, C. serrulata and S. isoetifolium) providing greater morphological protection for UV-sensitive organelles. Not all species were significantly affected by increasing PAR, with decreases in fluorescence ratio and increases in zeaxanthin content observed only in C. serrulata and S. isoetifolium. Sensitivity to PAR corresponded with morphological plasticity; species exhibiting a wide range of growth forms (e.g. Halophila ovalis, Halodule uninervis and Z. capricorni) were the least sensitive to increases in PAR. Seagrass depth-distributions in Moreton Bay appear to be influenced by species sensitivity to UV radiation and PAR, with other factors such as epiphytes, shading and nutrients also affecting species' tolerance. All species were affected to some degree by UV radiation, thus future changes in UV intensity may have repercussions on the distribution of seagrasses.

The high minimum light requirement of eelgrass Zosfera marina L. suggests that this species has difficulty in maintaining a positive carbon balance except under high fight conditions. The carbon balance of Z. marina can be studied by following seasonal changes in non&ructural carbo- hydrate (NSC) reserves, however, little is known about the seasonal variation in NSC reserves in sea- grasses or the influence of shading on NSC reserve content and distribution. Seasonal changes in eel- grass NSC reserves were measured in a shallow coastal lagoon, Chfncoteague Bay, Maryland/Virgima, USA, near the southern edge of this species' distributional range. Concentrations of sugar varied sea- sonally in leaves, rhizomes and roots, with maxhnum concentrations occurring in the rhizomes. In con- trast, starch concentrations did not vary with the season, but were highest in the roots. Seasonal peaks in rhizome NSC reserves parallel the spring and fall bimodal growth patterns observed for Z. marina in the region. Total NSC reserves change from an estimated 52 to 73 g mJ in June to 4 to 18 g rns2 in Jan- uary, or a decrease of 75 to 92 %. Experimental shading for 3 wk in the spring reduced (p c 0.001) sugar but not starch concentrations in leaves (48%), rhizomes (40%) and roots (51%). ln addition, shading reduced (p e 0.05) leaf biomass (34 %), root and rhizome biomass (23 %) and density (27 Yo). Potential NSC reserve storage during shading was reduced by an estimated 86%. Spring appears to be an important time for both growth and storage of NSC reserves in 2. marina, and the NSC reserves are generally depleted throughout the remainder of the year. Turbidity during thts springtime 'window of opportunity may jeopardize subsequent snrvival as a result of inadequate NSC reserves to maintain a positive carbon balance during the rest of the year.

Highly reducing sediments are prevalent in seagrass environments. Under anoxic conditions, hydrogen sulfide can accumulate as an end product of anaerobic respiration at levels which may be toxic to halophytes. The photosynthetic response of Zostera marina L. (eelgrass) to manipulations in sediment sulfide concentration and light regimes was examined in Chincoteague Bay in June 1991. Neutral density screens were used in a mesocosm experiment to decrease downwelling irradiance to 50 and 15% of insolation. Sediment sulfide levels were enriched using Na2S and lowered using FeSO4. Photosynthesis vs. irradiance (PI) relationships were determined experimentally at ten light levels throughout the 21 day experiment. Photoadaptation was detected in response to the previous 4 day light history of the plants, as maximum photosynthesis (Pmax) decreased in response to lower daily light levels. Negative impacts of sulfide on eelgrass in this study were observed through reductions in Pmax, increases in the light intensity at which gross photosynthesis equals respiration, and decreases in the initial slope of the PI curve. The effects of eutrophication through reduced light and increased sediment sulfide on Pmax were additive. Elevated sediment sulfide levels may contribute to seagrass loss in stressed areas as the potential for utilization of available light is reduced.

The purpose of this study was to elaborate on the role of coastal megacities in environmental degradation and their contribution to global climate change. Although only less than 4 percent of the total world’s population resides in coastal megacities, their impact on environment is significant due to their rapid development, high population densities and high consumption rate of their residents. This study was carried out by implementing a Drivers-Pressures-States-Impacts-Responses (DPSIR) framework. This analytical framework was chosen because of its potential to link the existing data, gathered from various previous studies, in causal relationship. In this text, coastal megacities have been defined as cities exceeding 10 million inhabitants, situated in "near-coastal zone". Their high rates of the consumption of food, water, space and energy were observed and linked to the high performance rates of related economic activities (industry, transportation, power generation, agriculture and water extraction). In many of the studied coastal megacities, deteriorated quality of air and water was perceived, which can, in combination with global warming, lead to health problems and economic and social disturbance among residents. The extent of problems varied between developing and developed countries, showing higher rates of population growth and certain harmful emissions in megacities of developing countries, as well as more problems regarding food and water shortages, sanitation, and health care support. Although certain projections predict slowdown of growth in most coastal megacities, their future impact on environment is still unclear due to the uncertainties regarding future climate change and trajectories of consumption patterns.