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The macrofauna settling on experimental substrates was studied at two sites of the Lesina Lagoon to test its possible role in monitoring ecological variations in a brackish-water ecosystem. The community settlement was seasonally investigated on 3-month-old wooden poles; the development was monitored from 2001 to 2005. Comparisons with benthic assemblages settled on 10-yr-old poles were also performed. The main hydrological parameters were periodically measured during the study. A total of 38 species were collected. The assemblage reached the highest development in the central lagoon, showing relevant carbonate structures which supported a rich vagile fauna. Close to the sea-water inlet species richness and abundance values were lower, with the disappearance of some brackish-water species. A remarkable salinity drop during 2004 produced some faunistic changes in the assemblages, which however maintained different structures between the study sites, thus confirming macrozoobenthos as an efficient bioindicator of different environmental conditions for transition biotopes and a useful investigation tool in monitoring programmes. [ABSTRACT FROM AUTHOR]