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Red abdominal shell disease is a major disease that has caused significant economic losses in Chinese soft-shelled turtle Pelodiscus sinensis aquaculture. Yet scarce information is available on Aeromonas dhakensis as a causal agent of red abdominal shell disease in P. sinensis. In the present study, a haemolytic and proteolytic A. dhakensis isolate (F04) was demonstrated as a causative agent of red abdominal shell disease in cultured P. sinensis. It carried virulent aerolysin, heat-labile cytotoxic enterotoxin, polar flagella, and lipase-encoding genes aer, alt, flaA, and lip, exhibited the mean lethal dose (LD50) value of 4.27×105 CFU/ml in P. sinensis, and developed multiple resistances against aminoglycosides, chloramphenicols, cephalosporins, lincosamides, macrolides, penicillins, peptides, sulfonamides, and tetracyclines antimicrobials. To our knowledge, this is the first study to identify a multiply resistant A. dhakensis strain as a pathogen of red abdominal shell disease in P. sinensis, and the findings of this study can also provide valuable insights into the virulence and antimicrobial resistance in Chinese soft-shelled turtle-pathogenic A. dhakensis.

The development of microbial communities is important for the growth of the fat greenling Hexagrammos otakii; however, the relationship between microbial communities and fish diet is poorly understood. Here, we used metagenomics sequencing to investigate the gut microbiota of H. otakii at three key time points during development. The gut microbial diversity and community composition of H. otakii presented stage-specific signatures and appeared to shift with different diets and environmental conditions such as NH4 + -NO2- etc. Metagenomics analysis indicated that the dominant phyla were Proteobacteria and Firmicutes. With dietary changes from rotifers and Artemia to formulated feed, the dominant genera shifted from Vibrio and Photobacterium to Lactococcus, and variations in the gut microbiota increased with age. Based on metagenomics functional annotation using the Kyoto Encyclopedia of Genes and Genomes database, growth and diet at different stages affected the metabolic function of the gut microbiome by activating carbohydrate and amino acid metabolism while weakening lipid and nucleotide metabolism. In addition, as predicted by the Carbohydrate-Active enZymes database, glycoside hydrolase and glycosyl transferases may be involved in food degradation. Our results suggest that the H. otakii gut microbiota assembly was coupled to animal development and host age-associated biotic features and changes. Diet had a considerable effect on these distinct communities at different times, indicating that the fish gut microbiota rapidly adapted to dietary shifts. The microbiota therefore likely plays an indispensable role in nutrient turnover and fermentation. These findings can provide guidance for the development of probiotics and the application of feed additives.

The genus Acinetobacter has recently emerged as bacterial pathogens associated with mass mortalities in aquaculture. Yet scarce information is available on Acinetobacter venetianus as a potential pathogen of whiteleg shrimp Penaeus vannamei. In the present study, an A. venetianus pathogen (SHF1) was confirmed as a causative agent of red leg disease in freshwater-cultured whiteleg shrimp. It showed a mean lethal dose (LD50) value of 3.8 × 105 CFU mL−1 and developed multiple resistances to phenicols, quinolones and tetracycline drugs used in aquaculture. In addition, the pathogenic A. venetianus could be effectively controlled by Bdellovibrio powder at 0.8 mg L−1, which exhibited significant antibacterial effect and displayed good protection against A. venetianus challenge in P. vannamei for six days. As far as we know, this is the first study to identify A. venetianus as a potential bacterial pathogen of red leg disease in freshwater-farmed whiteleg shrimp.