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Vertebral fusions are an established economic concern in farmed Atlantic salmon, but have not been studied in detail in farmed Chinook salmon. Two radiographic studies of vertebral fusions were performed in farmed Chinook salmon. Sixteen of 1,301 (1.2%) smolt and 201 of 2,636 (7.6%) harvest fish had fusions. There were no significant differences in the number of fused vertebrae/fusion in smolt compared with harvest fish. Secondly, tagged fish were repeatedly radiographed to determine the progression of the fusions. Nineteen (4.4%), 23 (5.3%) and 39 (9.0%) fish had fusions as smolt, after 129 days in sea water, and at harvest, respectively. There were no significant differences in the average number of vertebra/fusion between the three time points. Of the fusions that were observed in smolt, additional vertebra did not become fused in 81% of the lesions. Within the rare fusions that did progress due to the involvement of adjacent vertebra, an average of 1.6 vertebrae were added per year. Fish with fusions were significantly lighter than non-affected fish at harvest. Fusions are common in farmed Chinook salmon; however, they are typically stable after development. As fish with fusions were lighter at harvest, reducing fusions may have an economic benefit., (© 2019 John Wiley & Sons Ltd.)

The effectiveness of low cost breeding scheme designs for small aquaculture breeding programmes were assessed for their ability to achieve genetic gain while managing inbreeding using stochastic simulation. Individuals with trait data were simulated over 15 generations with selection on a single trait. Combinations of selection methods, mating strategies and genetic evaluation options were evaluated with and without the presence of common environmental effects. An Optimal Parent Selection (OPS) method using semi-definite programming was compared with a truncation selection (TS) method. OPS constrains the rate of inbreeding while maximising genetic gain. For either selection method, mating pairs were assigned from the selected parents by either random mating (RM) or Minimum Inbreeding Mating (MIM), which used integer programming to determine mating pairs. Offspring were simulated for each mating pair with equal numbers of offspring per pair and these offspring were the candidates for selection of parents of the next generation. Inbreeding and genetic gain for each generation were averaged over 25 replicates. Combined OPS and MIM led to a similar level of genetic gain to TS and RM, but inbreeding levels were around 75% lower than TS and RM after 15 generations. Results demonstrate that it would be possible to manage inbreeding over 15 generations within small breeding programmes comprised of 30 to 40 males and 30 to 40 females with the use of OPS and MIM. Selection on breeding values computed using Best Linear Unbiased Prediction (BLUP) with all individuals genotyped to obtain pedigree information resulted in an 11% increase in genetic merit and a 90% increase in the average inbreeding coefficient of progeny after 15 generations compared with selection on raw phenotype. Genetic evaluation strategies using BLUP wherein elite individuals by raw phenotype are genotyped to obtain parentage along with a range of different samples of remaining individuals did not increase genetic progress in comparison to selection on raw phenotype. When common environmental effects on full-sib families were simulated, performance of small breeding scheme designs was little affected. This was because the majority of selection must anyway be applied within family due to inbreeding constraints.

Two high value species, yellowtail kingfish (Seriola lalandi) and hāpuku (groper,Polyprion oxygeneios), have been identified as suitable new candidates for New Zealand aquaculture. This paper reviews the research by NIWA and collaborators conducted to test the biological, technological and economic feasibility of farming these two species. NIWA now has the capability to produce sufficient kingfish fingerlings per year to meet the needs of the early stages of an industry. Advances in hāpuku aquaculture have also been significant, from spawning in captivity through to the selection of juveniles for improved growth. Recently, the first spawning of captive hāpuku F1 broodstock and production of F2 eggs, larvae and juveniles was achieved. Although hāpuku larval survival remains variable, the ability to close the life cycle, and the availability of domesticated broodstock, provide a significant step forward and increase the chances of this species being commercially farmed. [ABSTRACT FROM AUTHOR]

Profitability of fish farming can be undermined by a suite of biological constraints. Effects of these constraints on the biology of the animal, the functioning of a tissue, or the quality of the final filleted product can be detected with very sensitive hi-tech approaches, grouped by the term ‘-omics’. These -omics technologies further present powerful tools for the genetic selection of diverse traits and, as such, will contribute substantially to the future development of the aquaculture sector. Sustainability issues of importance to the industry, such as environmental impacts, use of therapeutants, fish health management and fishmeal replacement, can again be aided, at least in part, through the effective use of -omics technologies. It thus appears that -omics technologies may be a key tool for the responsible growth of intensive aquaculture in the 21st century. In this paper we review the current status of -omics technologies and the potential for application within the aquaculture industry. [ABSTRACT FROM AUTHOR]

Aquaculture, like terrestrial farming, cannot achieve economic and sustainable production without high performing genetic stocks tailored to the conditions under which they are grown. It is essential, therefore, that aquaculture investment includes genetics and biotechnology to adapt marine livestock to the novel conditions of intensive aquaculture and to the demanding markets into which they are sold. The return on investment in well-structured breeding programmes can be very high, and significant performance and economic gains have been demonstrated in multiple species. Many factors must be considered in designing a genetic improvement programme, including the reproductive biology of the species and the identification of realistic and commercially relevant breeding goals based on the resources and facilities available. This paper reviews the options available to aquaculturists and provides examples of how these are being applied to six aquaculture species in New Zealand: king salmon, hāpuku, kingfish, GreenshellTMmussels, Pacific oysters and pāua (abalone). [ABSTRACT FROM AUTHOR]