5 results on '"Yingping Zhang"'
Search Results
2. The Effect of Hispidulin, a Flavonoid from
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Yiqun, Dai, Xiaolong, Sun, Bohan, Li, Hui, Ma, Pingping, Wu, Yingping, Zhang, Meilin, Zhu, Hong-Mei, Li, Minjian, Qin, and Cheng-Zhu, Wu
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Flavonoids ,Mice, Inbred BALB C ,Nasopharyngeal Carcinoma ,Tissue Inhibitor of Metalloproteinase-1 ,apoptosis ,Mice, Nude ,Nasopharyngeal Neoplasms ,Flavones ,invasion ,migration ,Article ,stomatognathic diseases ,Mice ,Matrix Metalloproteinase 9 ,Proto-Oncogene Proteins c-bcl-2 ,Cell Movement ,Cell Line, Tumor ,hispidulin ,otorhinolaryngologic diseases ,Animals ,Humans ,Matrix Metalloproteinase 2 ,Neoplasm Invasiveness ,Salvia ,Cell Proliferation - Abstract
Nasopharyngeal carcinoma (NPC) is a common malignant head and neck tumor. Drug resistance and distant metastasis are the predominant cause of treatment failure in NPC patients. Hispidulin is a flavonoid extracted from the bioassay-guided separation of the EtOH extract of Salvia plebeia with strong anti-proliferative activity in nasopharyngeal carcinoma cells (CNE-2Z). In this study, the effects of hispidulin on proliferation, invasion, migration, and apoptosis were investigated in CNE-2Z cells. The [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] (MTT) assay and the colony formation assay revealed that hispidulin could inhibit CNE-2Z cell proliferation. Hispidulin (25, 50, 100 μM) also induced apoptosis in a dose-dependent manner in CNE-2Z cells. The expression of Akt was reduced, and the expression of the ratio of Bax/Bcl-2 was increased. In addition, scratch wound and transwell assays proved that hispidulin (6.25, 12.5, 25 μM) could inhibited the migration and invasion in CNE-2Z cells. The expressions of HIF-1α, MMP-9, and MMP-2 were decreased, while the MMPs inhibitor TIMP1 was enhanced by hispidulin. Moreover, hispidulin exhibited potent suppression tumor growth and low toxicity in CNE-2Z cancer-bearing mice at a dosage of 20 mg/kg/day. Thus, hispidulin appears to be a potentially effective agent for NPC treatment.
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- 2021
3. Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder
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Min Wei, Qian Zhou, Jie Wang, Yang Liu, Yingping Zhang, Yingming Yang, Yangzhen Li, Xijiang Yu, Sheng Lu, Weiwei Zheng, and Chen Songlin
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lcsh:QH426-470 ,[SDV]Life Sciences [q-bio] ,Quantitative Trait Loci ,Genome-wide association study ,Single-nucleotide polymorphism ,Flounder ,Biology ,Quantitative trait locus ,Breeding ,Polymorphism, Single Nucleotide ,Chromosomes ,Fish Diseases ,Quantitative Trait, Heritable ,Genetic variation ,Genetics ,Animals ,Edwardsiella tarda ,Ecology, Evolution, Behavior and Systematics ,lcsh:SF1-1100 ,Disease Resistance ,0402 animal and dairy science ,Enterobacteriaceae Infections ,Bayes Theorem ,04 agricultural and veterinary sciences ,General Medicine ,Heritability ,biology.organism_classification ,040201 dairy & animal science ,Olive flounder ,Genetic architecture ,Pedigree ,lcsh:Genetics ,Animal Science and Zoology ,lcsh:Animal culture ,Research Article ,Genome-Wide Association Study - Abstract
Background Edwardsiella tarda causes acute symptoms with ascites in Japanese flounder (Paralichthys olivaceus) and is a major problem for China’s aquaculture sector. Genomic selection (GS) has been widely adopted in breeding industries because it shortens generation intervals and results in the selection of individuals that have great breeding potential with high accuracy. Based on an artificial challenge test and re-sequenced data of 1099 flounders, the aims of this study were to estimate the genetic parameters of resistance to E. tarda in Japanese flounder and to evaluate the accuracy of single-step GBLUP (ssGBLUP), weighted ssGBLUP (WssGBLUP), and BayesB for improving resistance to E. tarda by using three subsets of pre-selected single nucleotide polymorphisms (SNPs). In addition, SNPs that are associated with this trait were identified using a single-SNP genome-wide association study (GWAS) and WssGBLUP. Results We estimated a heritability of 0.13 ± 0.02 for resistance to E. tarda in Japanese flounder. One million SNPs at fixed intervals were selected from 4,978,724 SNPs that passed quality controls. GWAS identified significant SNPs on chromosomes 14 and 24. WssGBLUP revealed that the putative quantitative trait loci on chromosomes 1 and 14 contained SNPs that explained more than 1% of the genetic variance. Three 50 k-SNP subsets were pre-selected based on different criteria. Compared with pedigree-based prediction (ABLUP), the three genomic methods evaluated resulted in at least 7.7% greater accuracy of predictions. The accuracy of these genomic prediction methods was almost unchanged when pre-selected trait-related SNPs were used for prediction. Conclusions Resistance to E. tarda in Japanese flounder has a low heritability. GWAS and WssGBLUP revealed that the genetic architecture of this trait is polygenic. Genomic prediction of breeding values performed better than ABLUP. It is feasible to implement genomic selection to increase resistance to E. tarda in Japanese flounder with 50 k SNPs. Based on the criteria used here, pre-selection of SNPs was not beneficial and other criteria for pre-selection should be considered.
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- 2020
4. Genomic Selection Using BayesCπ and GBLUP for Resistance Against Edwardsiella tarda in Japanese Flounder (Paralichthys olivaceus)
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Hejun Sun, Qian Zhou, Songlin Chen, Feng Liu, Na Wang, Weiwei Zheng, Changwei Shao, Yingping Zhang, Yangzhen Li, Sheng Lu, Yingming Yang, and Yang Liu
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Fish Proteins ,0301 basic medicine ,Genetics ,biology ,Resistance (ecology) ,Paralichthys ,Gene Expression Profiling ,Edwardsiella tarda ,Flounder ,Genomics ,biology.organism_classification ,Applied Microbiology and Biotechnology ,DNA sequencing ,Olive flounder ,Fish Diseases ,03 medical and health sciences ,030104 developmental biology ,Flatfish ,Animals ,Genomic selection ,Selection (genetic algorithm) - Abstract
The Japanese flounder is one of the most widely farmed economic flatfish species throughout eastern Asia including China, Korea, and Japan. Edwardsiella tarda is a major species of pathogenic bacteria that causes ascites disease and, consequently, a huge economy loss for Japanese flounder farming. After generation selection, traditional breeding methods can hardly improve the E. tarda resistance effectively. Genomic selection is an effective way to predict the breeding potential of parents and has rarely been used in aquatic breeding. In this study, we chose 931 individuals from 90 families, challenged by E. tarda from 2013 to 2015 as a reference population and 71 parents of these families as selection candidates. 1,934,475 markers were detected via genome sequencing and applied in this study. Two different methods, BayesCπ and GBLUP, were used for genomic prediction. In the reference population, two methods led to the same accuracy (0.946) and Pearson's correlation results between phenotype and genomic estimated breeding value (GEBV) of BayesCπ and GBLUP were 0.912 and 0.761, respectively. In selection candidates, GEBVs from two methods were highly similar (0.980). A comparison of GEBV with the survival rate of families that were structured by selection candidates showed correlations of 0.662 and 0.665, respectively. This study established a genomic selection method for the Japanese flounder and for the first time applied this to E. tarda resistance breeding.
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- 2018
5. A Genome Scan for Quantitative Trait Loci Associated with Vibrio anguillarum Infection Resistance in Japanese Flounder (Paralichthys olivaceus) by Bulked Segregant Analysis
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Ying Xu, Xiaolin Liao, Deqiang Sun, Song-Lin Chen, Shoutang Liu, Wenlong Li, Yang Liu, Yingping Zhang, Yongsheng Tian, Lei Wang, Caixia Fan, Mingshu Xie, and Han Deng
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Genetics ,Vibrio anguillarum ,Models, Genetic ,biology ,Quantitative Trait Loci ,Bulked segregant analysis ,Chromosome Mapping ,food and beverages ,Genome Scan ,Flounder ,Genomics ,Plant disease resistance ,Quantitative trait locus ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Fish Diseases ,genomic DNA ,Genetic linkage ,Vibrio Infections ,Genotype ,Animals ,Disease Resistance ,Microsatellite Repeats - Abstract
A recent genetic linkage map was employed to detect quantitative trait loci (QTLs) associated with Vibrio anguillarum resistance in Japanese flounder. An F1 family established and challenged with V. anguillarum in 2009 was used for QTL mapping. Of the 221 simple sequence repeat (SSR) markers used to detect polymorphisms in the parents of F1, 170 were confirmed to be polymorphic. The average distance between the markers was 10.6 cM. Equal amounts of genomic DNA from 15 fry that died early and from 15 survivors were pooled separately to constitute susceptible bulk and resistance bulk DNA. Bulked segregant analysis and QTL mapping were combined to detect candidate SSR markers and regions associated with the disease. A genome scan identified four polymorphic SSR markers, two of which were significantly different between susceptible and resistance bulk (P=0.008). These two markers were located in linkage group (LG) 7; therefore, all the SSR markers in LG7 were genotyped in all the challenged fry by single marker analysis. Using two different models, 11-17 SSR markers were detected with different levels of significance. To confirm the associations of these markers with the disease, composite interval mapping was employed to genotype all the challenged individuals. One and three QTLs, which explained more than 60 % of the phenotypic variance, were detected by the two models. Two of the QTLs were located at 48.6 cM. The common QTL may therefore be a major candidate region for disease resistance against V. anguillarum infection.
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- 2014
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