1. 5′-tRF-GlyGCC: a tRNA-derived small RNA as a novel biomarker for colorectal cancer diagnosis
- Author
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Lichen Ge, Jiexin Li, Xiangling Yang, Haisheng Zhang, Hong-Sheng Wang, Yingmin Wu, Guanmin Jiang, Huanliang Liu, and Feng Chen
- Subjects
Male ,0301 basic medicine ,Small RNA ,tRNA-derived small RNAs ,lcsh:QH426-470 ,Colorectal cancer ,lcsh:Medicine ,Biology ,03 medical and health sciences ,Plasma ,0302 clinical medicine ,Carcinoembryonic antigen ,RNA, Transfer ,Downregulation and upregulation ,In vivo ,Cell Line, Tumor ,Biomarkers, Tumor ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Genetics (clinical) ,5′-tRF-GlyGCC ,Mice, Inbred BALB C ,ALKBH3 ,Gene Expression Profiling ,Research ,lcsh:R ,Cancer ,medicine.disease ,Xenograft Model Antitumor Assays ,digestive system diseases ,CRC ,Gene Expression Regulation, Neoplastic ,lcsh:Genetics ,030104 developmental biology ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Molecular Medicine ,Biomarker (medicine) ,Female ,AlkB Homolog 3, Alpha-Ketoglutarate-Dependent Dioxygenase ,Colorectal Neoplasms - Abstract
Background tRNA-derived small RNAs (tDRs), which are widely distributed in human tissues including blood and urine, play an important role in the progression of cancer. However, the expression of tDRs in colorectal cancer (CRC) plasma and their potential diagnostic values have not been systematically explored. Methods The expression profiles of tDRs in plasma of CRC and health controls (HCs) are investigated by small RNA sequencing. The level and diagnostic value of 5′-tRF-GlyGCC are evaluated by quantitative PCR in plasma samples from 105 CRC patients and 90 HCs. The mechanisms responsible for biogenesis of 5′-tRF-GlyGCC are checked by in vitro and in vivo models. Results 5′-tRF-GlyGCC is dramatically increased in plasma of CRC patients compared to that of HCs. The area under curve (AUC) for 5′-tRF-GlyGCC in CRC group is 0.882. The combination of carcinoembryonic antigen (CEA) and carbohydrate antigen 199 (CA199) with 5′-tRF-GlyGCC improves the AUC to 0.926. Consistently, the expression levels of 5′-tRF-GlyGCC in CRC cells and xenograft tissues are significantly greater than that in their corresponding controls. Blood cells co-cultured with CRC cells or mice xenografted with CRC tumors show increased levels of 5′-tRF-GlyGCC. In addition, we find that the increased expression of 5′-tRF-GlyGCC is dependent on the upregulation of AlkB homolog 3 (ALKBH3), a tRNA demethylase which can promote tRNA cleaving to generate tDRs. Conclusions The level of 5′-tRF-GlyGCC in plasma is a promising diagnostic biomarker for CRC diagnosis.
- Published
- 2021