1. Comparing the phenotypic, genotypic, and proteomic identification of Trichosporon species: A globally emerging yeast of medical importance
- Author
-
Diniz Pereira Leite Júnior, Lumena P. Machado Siqueira, Luciana da Silva Ruiz, Hans Garcia Garces, Juliana Possatto Fernandes Takahashi, Mônica Silveira, Viviane Mazo Fávero Gimenes, Claudete Rodrigues Paula, Laís Anversa, Virgínia Bodelão Richini-Pereira, Mariana Volpe Arnoni, Marcia S. C. Melhem, Bruno Braidotti de Camargo, Bruna Rossini Lara, Universidade Estadual Paulista (UNESP), Biomedical Sciences Center, Universidade de São Paulo (USP), Federal University of Mato Grosso (UFMT), Hospital, Darcy Vargas Children's Hospital, Bauru State Hospital (HEB), and Mycology Sector
- Subjects
Proteomics ,Genetics ,Ecological niche ,biology ,Concordance ,Trichosporon spp ,Phenotypic identification ,Saccharomyces cerevisiae ,General Medicine ,biology.organism_classification ,Phenotype ,Genotypic identification ,Yeast ,Infectious Diseases ,Trichosporon ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Mycology ,Genotype ,Animals ,MALDI-TOF MS ,Identification (biology) ,Emerging pathogens - Abstract
Made available in DSpace on 2022-04-28T19:49:05Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-12-01 Trichosporon spp. are widely distributed in the nature, comprising species that inhabit different ecological niches and can be found in the water, soil, and body surface of animals and humans. Such microorganisms have been classically associated with superficial infections; however, in the last decades, they have also been related to disseminated infections in immunocompromised patients, behaving as opportunistic agents, which demands rapid and accurate species identification for efficient therapy. Concordance level between the traditional phenotypic method and the molecular technique (gold standard) in the identification of all 59 Trichosporon samples was 59.3%. Identification concordance between MALDI-TOF spectrometry and the molecular technique was 71.2%. No isolate of environmental origin was identifiable by MALDI-TOF mass spectrometry (MS), and 100% of such environmental isolates were discordant for IGS region sequencing and phenotypic characterization. Both comparisons evidenced greatest concordance in the identification of T. asahii. The species T. debeurmannianum, T. dermatis, T. venhuisii and T. insectorum were not properly identified by both MALDI-TOF MS and the phenotypic technique. MALDI-TOF MS, in particular, seems to be appropriate to investigate yeasts of the genus Trichosporon; however, database updates are still necessary, especially for species that are not common in the clinical routine. With the aim of helping understand the aspects involved in early and accurate diagnosis of infections caused by this opportunistic agent, the present study compared the phenotypic, molecular (IGS region) and mass-spectrometry (MALDI-TOF) identification of 59 yeasts of the genus Trichosporon which had clinical and environmental origin and were kept in a mycology collection. São Paulo State University (Unesp) Institute of Biosciences, São Paulo (SP) Adolfo Lutz Institute (IAL) CLR II Biomedical Sciences Center, SP University of São Paulo (USP) School of Dentistry, SP Faculty of Medicine Federal University of Mato Grosso (UFMT), Av. Fernando Corrêa da Costa, 2.367, MT Irmandade da Santa Casa de Misericórdia de São Paulo Hospital, SP Darcy Vargas Children's Hospital, SP Bauru State Hospital (HEB), SP University of São Paulo (USP) Institute of Tropical Medicine, SP Adolfo Lutz Central Institute (IAL) Mycology Sector, SP São Paulo State University (Unesp) Institute of Biosciences, São Paulo (SP)
- Published
- 2021