1. Proteome-wide systems genetics identifies UFMylation as a regulator of skeletal muscle function
- Author
-
Jeffrey Molendijk, Ronnie Blazev, Richard J Mills, Yaan-Kit Ng, Kevin I Watt, Daryn Chau, Paul Gregorevic, Peter J Crouch, James BW Hilton, Leszek Lisowski, Peixiang Zhang, Karen Reue, Aldons J Lusis, James E Hudson, David E James, Marcus M Seldin, and Benjamin L Parker
- Subjects
Proteomics ,systems genetics ,Proteome ,Mouse ,1.1 Normal biological development and functioning ,General Biochemistry, Genetics and Molecular Biology ,Mice ,computational biology ,Rare Diseases ,Underpinning research ,UFMylation ,Genetics ,Animals ,Humans ,2.1 Biological and endogenous factors ,human ,skeletal muscle ,Aetiology ,General Immunology and Microbiology ,General Neuroscience ,Human Genome ,systems biology ,Skeletal ,General Medicine ,Phenotype ,Musculoskeletal ,Quality of Life ,Muscle ,Biochemistry and Cell Biology ,Biotechnology - Abstract
Improving muscle function has great potential to improve the quality of life. To identify novel regulators of skeletal muscle metabolism and function, we performed a proteomic analysis of gastrocnemius muscle from 73 genetically distinct inbred mouse strains, and integrated the data with genomics and >300 molecular/phenotypic traits via quantitative trait loci mapping and correlation network analysis. These data identified thousands of associations between protein abundance and phenotypes and can be accessed online (https://muscle.coffeeprot.com/) to identify regulators of muscle function. We used this resource to prioritize targets for a functional genomic screen in human bioengineered skeletal muscle. This identified several negative regulators of muscle function including UFC1, an E2 ligase for protein UFMylation. We show UFMylation is up-regulated in a mouse model of amyotrophic lateral sclerosis, a disease that involves muscle atrophy. Furthermore, in vivo knockdown of UFMylation increased contraction force, implicating its role as a negative regulator of skeletal muscle function.
- Published
- 2022