319 results on '"P. Collin"'
Search Results
2. Extending trait dispersion across trophic levels: Predator assemblages act as top‐down filters on prey communities
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Gross, Collin P and Stachowicz, John J
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Climate Change Impacts and Adaptation ,Biological Sciences ,Ecology ,Environmental Sciences ,Animals ,Food Chain ,Predatory Behavior ,Fishes ,California ,Zosteraceae ,community assembly ,eelgrass ,epifauna ,fishes ,functional traits ,trait dispersion ,Ecological Applications ,Evolutionary Biology ,Zoology ,Ecological applications - Abstract
Studies of community assembly typically focus on the effects of abiotic environmental filters and stabilizing competition on functional trait dispersion within single trophic levels. Predation is a well-known driver of community diversity and composition, yet the role of functionally diverse predator communities in filtering prey community traits has received less attention. We examined functionally diverse communities of predators (fishes) and prey (epifaunal crustaceans) in eelgrass (Zostera marina) beds in two northern California estuaries to evaluate the filtering effects of predator traits on community assembly and how filters acting on predators influence their ability to mediate prey community assembly. Fish traits related to bottom orientation were correlated with more clustered epifauna communities, and epifauna were generally overdispersed while fishes were clustered, suggesting prey may be pushed to disparate areas of trait space to avoid capture by benthic sit-and-wait predators. We also found correlations between the trait dispersions of predator and prey communities that strengthened after accounting for the effects of habitat filters on predator dispersion, suggesting that habitat filtering effects on predator species pools may hinder their ability to affect prey community assembly. Our results present compelling observational evidence that specific predator traits have measurable impacts on the community assembly of prey, inviting experimental tests of predator trait means on community assembly and explicit comparisons of how the relative effects of habitat filters and intraguild competition on predators impact their ability to affect prey community assembly. Integrating our understanding of traits at multiple trophic levels can help us better predict the impacts of community composition on food web dynamics as regional species pools shift with climate change and anthropogenic introductions.
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- 2024
3. Fueling the heartbeat: Dynamic regulation of intracellular ATP during excitation–contraction coupling in ventricular myocytes
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Rhana, Paula, Matsumoto, Collin, Fong, Zhihui, Costa, Alexandre D, Del Villar, Silvia G, Dixon, Rose E, and Santana, L Fernando
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Biological Sciences ,Medical Physiology ,Biomedical and Clinical Sciences ,Cardiovascular ,Heart Disease ,1.1 Normal biological development and functioning ,Myocytes ,Cardiac ,Adenosine Triphosphate ,Excitation Contraction Coupling ,Animals ,Calcium ,Heart Ventricles ,Action Potentials ,Sarcoplasmic Reticulum ,Heart Rate ,Humans ,KATP Channels ,Myocardial Contraction ,Mice ,calcium ,mitochondria ,mitofusin 2 ,electrometabolic coupling - Abstract
The heart beats approximately 100,000 times per day in humans, imposing substantial energetic demands on cardiac muscle. Adenosine triphosphate (ATP) is an essential energy source for normal function of cardiac muscle during each beat, as it powers ion transport, intracellular Ca2+ handling, and actin-myosin cross-bridge cycling. Despite this, the impact of excitation-contraction coupling on the intracellular ATP concentration ([ATP]i) in myocytes is poorly understood. Here, we conducted real-time measurements of [ATP]i in ventricular myocytes using a genetically encoded ATP fluorescent reporter. Our data reveal rapid beat-to-beat variations in [ATP]i. Notably, diastolic [ATP]i was
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- 2024
4. Differential effects of acute and prolonged morphine withdrawal on motivational and goal-directed control over reward-seeking behaviour.
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Halbout, Briac, Hutson, Collin, Agrawal, Stuti, Springs, Zachary, and Ostlund, Sean
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goal‐directed ,habit ,incentive ,opiate ,reward ,sensitization ,withdrawal ,Animals ,Substance Withdrawal Syndrome ,Reward ,Motivation ,Male ,Goals ,Morphine ,Rats ,Morphine Dependence ,Narcotics ,Conditioning ,Operant - Abstract
Opioid addiction is a relapsing disorder marked by uncontrolled drug use and reduced interest in normally rewarding activities. The current study investigated the impact of spontaneous withdrawal from chronic morphine exposure on emotional, motivational and cognitive processes involved in regulating the pursuit and consumption of food rewards in male rats. In Experiment 1, rats experiencing acute morphine withdrawal lost weight and displayed somatic signs of drug dependence. However, hedonically driven sucrose consumption was significantly elevated, suggesting intact and potentially heightened reward processing. In Experiment 2, rats undergoing acute morphine withdrawal displayed reduced motivation when performing an effortful response for palatable food reward. Subsequent reward devaluation testing revealed that acute withdrawal disrupted their ability to exert flexible goal-directed control over reward seeking. Specifically, morphine-withdrawn rats were impaired in using current reward value to select actions both when relying on prior action-outcome learning and when given direct feedback about the consequences of their actions. In Experiment 3, rats tested after prolonged morphine withdrawal displayed heightened rather than diminished motivation for food rewards and retained their ability to engage in flexible goal-directed action selection. However, brief re-exposure to morphine was sufficient to impair motivation and disrupt goal-directed action selection, though in this case, rats were only impaired in using reward value to select actions in the presence of morphine-paired context cues and in the absence of response-contingent feedback. We suggest that these opioid-withdrawal induced deficits in motivation and goal-directed control may contribute to addiction by interfering with the pursuit of adaptive alternatives to drug use.
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- 2024
5. Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans.
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Teuscher, Alina, Statzer, Cyril, Goyala, Anita, Domenig, Seraina, Schoen, Ingmar, Hess, Max, Hofer, Alexander, Vogel, Viola, Goksel, Orcun, Aebersold, Ruedi, Ewald, Collin, and Fossati, Andrea
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Animals ,Longevity ,Caenorhabditis elegans ,Mechanotransduction ,Cellular ,Extracellular Matrix ,Collagen ,Transcription Factors ,Homeostasis ,YAP-Signaling Proteins ,Caenorhabditis elegans Proteins - Abstract
Dysfunctional extracellular matrices (ECM) contribute to aging and disease. Repairing dysfunctional ECM could potentially prevent age-related pathologies. Interventions promoting longevity also impact ECM gene expression. However, the role of ECM composition changes in healthy aging remains unclear. Here we perform proteomics and in-vivo monitoring to systematically investigate ECM composition (matreotype) during aging in C. elegans revealing three distinct collagen dynamics. Longevity interventions slow age-related collagen stiffening and prolong the expression of collagens that are turned over. These prolonged collagen dynamics are mediated by a mechanical feedback loop of hemidesmosome-containing structures that span from the exoskeletal ECM through the hypodermis, basement membrane ECM, to the muscles, coupling mechanical forces to adjust ECM gene expression and longevity via the transcriptional co-activator YAP-1 across tissues. Our results provide in-vivo evidence that coordinated ECM remodeling through mechanotransduction is required and sufficient to promote longevity, offering potential avenues for interventions targeting ECM dynamics.
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- 2024
6. Cystatin F attenuates neuroinflammation and demyelination following murine coronavirus infection of the central nervous system
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Syage, Amber R, Pachow, Collin, Murray, Kaitlin M, Henningfield, Caden, Fernandez, Kellie, Du, Annie, Cheng, Yuting, Olivarria, Gema, Kawauchi, Shimako, MacGregor, Grant R, Green, Kim N, and Lane, Thomas E
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Medical Microbiology ,Biomedical and Clinical Sciences ,Immunology ,Neurodegenerative ,Brain Disorders ,Emerging Infectious Diseases ,Neurosciences ,Genetics ,Infectious Diseases ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Infection ,Good Health and Well Being ,Animals ,Mice ,Demyelinating Diseases ,Murine hepatitis virus ,Cystatins ,Mice ,Knockout ,Coronavirus Infections ,Mice ,Inbred C57BL ,Neuroinflammatory Diseases ,Cystatin F ,Coronavirus ,Microglia ,Demyelination ,Remyelination ,Clinical Sciences ,Neurology & Neurosurgery - Abstract
BackgroundCystatin F is a secreted lysosomal cysteine protease inhibitor that has been implicated in affecting the severity of demyelination and enhancing remyelination in pre-clinical models of immune-mediated demyelination. How cystatin F impacts neurologic disease severity following viral infection of the central nervous system (CNS) has not been well characterized and was the focus of this study. We used cystatin F null-mutant mice (Cst7-/-) with a well-established model of murine coronavirus-induced neurologic disease to evaluate the contributions of cystatin F in host defense, demyelination and remyelination.MethodsWildtype controls and Cst7-/- mice were intracranially (i.c.) infected with a sublethal dose of the neurotropic JHM strain of mouse hepatitis virus (JHMV), with disease progression and survival monitored daily. Viral plaque assays and qPCR were used to assess viral levels in CNS. Immune cell infiltration into the CNS and immune cell activation were determined by flow cytometry and 10X genomics chromium 3' single cell RNA sequencing (scRNA-seq). Spinal cord demyelination was determined by luxol fast blue (LFB) and Hematoxylin/Eosin (H&E) staining and axonal damage assessed by immunohistochemical staining for SMI-32. Remyelination was evaluated by electron microscopy (EM) and calculation of g-ratios.ResultsJHMV-infected Cst7-/- mice were able to control viral replication within the CNS, indicating that cystatin F is not essential for an effective Th1 anti-viral immune response. Infiltration of T cells into the spinal cords of JHMV-infected Cst7-/- mice was increased compared to infected controls, and this correlated with increased axonal damage and demyelination associated with impaired remyelination. Single-cell RNA-seq of CD45 + cells enriched from spinal cords of infected Cst7-/- and control mice revealed enhanced expression of transcripts encoding T cell chemoattractants, Cxcl9 and Cxcl10, combined with elevated expression of interferon-g (Ifng) and perforin (Prf1) transcripts in CD8 + T cells from Cst7-/- mice compared to controls.ConclusionsCystatin F is not required for immune-mediated control of JHMV replication within the CNS. However, JHMV-infected Cst7-/- mice exhibited more severe clinical disease associated with increased demyelination and impaired remyelination. The increase in disease severity was associated with elevated expression of T cell chemoattractant chemokines, concurrent with increased neuroinflammation. These findings support the idea that cystatin F influences expression of proinflammatory gene expression impacting neuroinflammation, T cell activation and/or glia cell responses ultimately impacting neuroinflammation and neurologic disease.
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- 2024
7. A computational model predicts sex-specific responses to calcium channel blockers in mammalian mesenteric vascular smooth muscle
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Hernandez-Hernandez, Gonzalo, O'Dwyer, Samantha C, Yang, Pei-Chi, Matsumoto, Collin, Tieu, Mindy, Fong, Zhihui, Lewis, Timothy J, Santana, L Fernando, and Clancy, Colleen E
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Medical Physiology ,Biomedical and Clinical Sciences ,Cardiovascular ,Women's Health ,Bioengineering ,Hypertension ,1.1 Normal biological development and functioning ,Mice ,Male ,Female ,Animals ,Calcium Channel Blockers ,Muscle ,Smooth ,Vascular ,Arteries ,Blood Pressure ,Potassium Channels ,Voltage-Gated ,Calcium ,Mammals ,computer model ,digital twin ,simulation ,hypertension ,sex differences ,Mouse ,computational biology ,medicine ,mouse ,systems biology ,Biochemistry and Cell Biology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
The function of the smooth muscle cells lining the walls of mammalian systemic arteries and arterioles is to regulate the diameter of the vessels to control blood flow and blood pressure. Here, we describe an in silico model, which we call the 'Hernandez-Hernandez model', of electrical and Ca2+ signaling in arterial myocytes based on new experimental data indicating sex-specific differences in male and female arterial myocytes from murine resistance arteries. The model suggests the fundamental ionic mechanisms underlying membrane potential and intracellular Ca2+ signaling during the development of myogenic tone in arterial blood vessels. Although experimental data suggest that KV1.5 channel currents have similar amplitudes, kinetics, and voltage dependencies in male and female myocytes, simulations suggest that the KV1.5 current is the dominant current regulating membrane potential in male myocytes. In female cells, which have larger KV2.1 channel expression and longer time constants for activation than male myocytes, predictions from simulated female myocytes suggest that KV2.1 plays a primary role in the control of membrane potential. Over the physiological range of membrane potentials, the gating of a small number of voltage-gated K+ channels and L-type Ca2+ channels are predicted to drive sex-specific differences in intracellular Ca2+ and excitability. We also show that in an idealized computational model of a vessel, female arterial smooth muscle exhibits heightened sensitivity to commonly used Ca2+ channel blockers compared to male. In summary, we present a new model framework to investigate the potential sex-specific impact of antihypertensive drugs.
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- 2024
8. The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance
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Caswell, Deborah R, Gui, Philippe, Mayekar, Manasi K, Law, Emily K, Pich, Oriol, Bailey, Chris, Boumelha, Jesse, Kerr, D Lucas, Blakely, Collin M, Manabe, Tadashi, Martinez-Ruiz, Carlos, Bakker, Bjorn, De Dios Palomino Villcas, Juan, I. Vokes, Natalie, Dietzen, Michelle, Angelova, Mihaela, Gini, Beatrice, Tamaki, Whitney, Allegakoen, Paul, Wu, Wei, Humpton, Timothy J, Hill, William, Tomaschko, Mona, Lu, Wei-Ting, Haderk, Franziska, Al Bakir, Maise, Nagano, Ai, Gimeno-Valiente, Francisco, de Carné Trécesson, Sophie, Vendramin, Roberto, Barbè, Vittorio, Mugabo, Miriam, Weeden, Clare E, Rowan, Andrew, McCoach, Caroline E, Almeida, Bruna, Green, Mary, Gomez, Carlos, Nanjo, Shigeki, Barbosa, Dora, Moore, Chris, Przewrocka, Joanna, Black, James RM, Grönroos, Eva, Suarez-Bonnet, Alejandro, Priestnall, Simon L, Zverev, Caroline, Lighterness, Scott, Cormack, James, Olivas, Victor, Cech, Lauren, Andrews, Trisha, Rule, Brandon, Jiao, Yuwei, Zhang, Xinzhu, Ashford, Paul, Durfee, Cameron, Venkatesan, Subramanian, Temiz, Nuri Alpay, Tan, Lisa, Larson, Lindsay K, Argyris, Prokopios P, Brown, William L, Yu, Elizabeth A, Rotow, Julia K, Guha, Udayan, Roper, Nitin, Yu, Johnny, Vogel, Rachel I, Thomas, Nicholas J, Marra, Antonio, Selenica, Pier, Yu, Helena, Bakhoum, Samuel F, Chew, Su Kit, Reis-Filho, Jorge S, Jamal-Hanjani, Mariam, Vousden, Karen H, McGranahan, Nicholas, Van Allen, Eliezer M, Kanu, Nnennaya, Harris, Reuben S, Downward, Julian, Bivona, Trever G, and Swanton, Charles
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Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Agricultural Biotechnology ,Biotechnology ,Lung Cancer ,Lung ,Cancer ,Women's Health ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,Humans ,Animals ,Mice ,Carcinoma ,Non-Small-Cell Lung ,Lung Neoplasms ,Mutation ,Up-Regulation ,ErbB Receptors ,Cytidine Deaminase ,Minor Histocompatibility Antigens ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
In this study, the impact of the apolipoprotein B mRNA-editing catalytic subunit-like (APOBEC) enzyme APOBEC3B (A3B) on epidermal growth factor receptor (EGFR)-driven lung cancer was assessed. A3B expression in EGFR mutant (EGFRmut) non-small-cell lung cancer (NSCLC) mouse models constrained tumorigenesis, while A3B expression in tumors treated with EGFR-targeted cancer therapy was associated with treatment resistance. Analyses of human NSCLC models treated with EGFR-targeted therapy showed upregulation of A3B and revealed therapy-induced activation of nuclear factor kappa B (NF-κB) as an inducer of A3B expression. Significantly reduced viability was observed with A3B deficiency, and A3B was required for the enrichment of APOBEC mutation signatures, in targeted therapy-treated human NSCLC preclinical models. Upregulation of A3B was confirmed in patients with NSCLC treated with EGFR-targeted therapy. This study uncovers the multifaceted roles of A3B in NSCLC and identifies A3B as a potential target for more durable responses to targeted cancer therapy.
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- 2024
9. Tuning sterol extraction kinetics yields a renal-sparing polyene antifungal.
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Maji, Arun, Soutar, Corinne, Zhang, Jiabao, Lewandowska, Agnieszka, Uno, Brice, Yan, Su, Shelke, Yogesh, Murhade, Ganesh, Nimerovsky, Evgeny, Borcik, Collin, Arango, Andres, Lange, Justin, Marin-Toledo, Jonnathan, Lyu, Yinghuan, Bailey, Keith, Roady, Patrick, Holler, Jordan, Khandelwal, Anuj, SantaMaria, Anna, Sanchez, Hiram, Juvvadi, Praveen, Johns, Gina, Hageman, Michael, Krise, Joanna, Gebremariam, Teclegiorgis, Youssef, Eman, Bartizal, Ken, Marr, Kieren, Steinbach, William, Patterson, Thomas, Wiederhold, Nathan, Andes, David, Pogorelov, Taras, Schwieters, Charles, Fan, Timothy, Rienstra, Chad, Burke, Martin, and Ibrahim, Ashraf
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Animals ,Humans ,Mice ,Amphotericin B ,Antifungal Agents ,Cells ,Cultured ,Cholesterol ,Drug Resistance ,Fungal ,Ergosterol ,Kidney ,Kinetics ,Microbial Sensitivity Tests ,Mycoses ,Polyenes ,Serial Passage ,Sterols ,Time Factors - Abstract
Decades of previous efforts to develop renal-sparing polyene antifungals were misguided by the classic membrane permeabilization model1. Recently, the clinically vital but also highly renal-toxic small-molecule natural product amphotericin B was instead found to kill fungi primarily by forming extramembraneous sponge-like aggregates that extract ergosterol from lipid bilayers2-6. Here we show that rapid and selective extraction of fungal ergosterol can yield potent and renal-sparing polyene antifungals. Cholesterol extraction was found to drive the toxicity of amphotericin B to human renal cells. Our examination of high-resolution structures of amphotericin B sponges in sterol-free and sterol-bound states guided us to a promising structural derivative that does not bind cholesterol and is thus renal sparing. This derivative was also less potent because it extracts ergosterol more slowly. Selective acceleration of ergosterol extraction with a second structural modification yielded a new polyene, AM-2-19, that is renal sparing in mice and primary human renal cells, potent against hundreds of pathogenic fungal strains, resistance evasive following serial passage in vitro and highly efficacious in animal models of invasive fungal infections. Thus, rational tuning of the dynamics of interactions between small molecules may lead to better treatments for fungal infections that still kill millions of people annually7,8 and potentially other resistance-evasive antimicrobials, including those that have recently been shown to operate through supramolecular structures that target specific lipids9.
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- 2023
10. Pathogen-driven degradation of endogenous and therapeutic antibodies during streptococcal infections.
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Toledo, Alejandro, Bratanis, Eleni, Velásquez, Erika, Chowdhury, Sounak, Olofsson, Berit, Sorrentino, James, Karlsson, Christofer, Esko, Jeffrey, Collin, Mattias, Shannon, Oonagh, Malmström, Johan, and Lewis, Nathan
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Humans ,Animals ,Bacterial Proteins ,Immunoglobulin G ,Streptococcal Infections ,Streptococcus pyogenes ,Virulence Factors - Abstract
Group A streptococcus (GAS) is a major bacterial pathogen responsible for both local and systemic infections in humans. The molecular mechanisms that contribute to disease heterogeneity remain poorly understood. Here we show that the transition from a local to a systemic GAS infection is paralleled by pathogen-driven alterations in IgG homeostasis. Using animal models and a combination of sensitive proteomics and glycoproteomics readouts, we documented the progressive accumulation of IgG cleavage products in plasma, due to extensive enzymatic degradation triggered by GAS infection in vivo. The level of IgG degradation was modulated by the route of pathogen inoculation, and mechanistically linked to the combined activities of the bacterial protease IdeS and the endoglycosidase EndoS, upregulated during infection. Importantly, we show that these virulence factors can alter the structure and function of exogenous therapeutic IgG in vivo. These results shed light on the role of bacterial virulence factors in shaping GAS pathogenesis, and potentially blunting the efficacy of antimicrobial therapies.
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- 2023
11. 20-αHydroxycholesterol, an oxysterol in human breast milk, reverses mouse neonatal white matter injury through Gli-dependent oligodendrogenesis.
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Chao, Agnes, Matak, Pavle, Pegram, Kelly, Powers, James, Hutson, Collin, Jo, Rebecca, Dubois, Laura, Thompson, J, Smith, P, Jain, Vaibhav, Liu, Chunlei, Younge, Noelle, Rikard, Blaire, Reyes, Estefany, Shinohara, Mari, Gregory, Simon, Goldberg, Ronald, and Benner, Eric
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OPC ,SVZ ,cerebral palsy ,necrotizing enterocolitis ,oligodendrocyte ,prematurity ,preterm ,remyelination ,Female ,Humans ,Animals ,Mice ,Infant ,Newborn ,White Matter ,Milk ,Human ,Hedgehog Proteins ,Premature Birth ,Cerebral Ventricles ,Brain Injuries ,Oligodendroglia - Abstract
White matter injuries (WMIs) are the leading cause of neurologic impairment in infants born premature. There are no treatment options available. The most common forms of WMIs in infants occur prior to the onset of normal myelination, making its pathophysiology distinctive, thus requiring a tailored approach to treatment. Neonates present a unique opportunity to repair WMIs due to a transient abundance of neural stem/progenitor cells (NSPCs) present in the germinal matrix with oligodendrogenic potential. We identified an endogenous oxysterol, 20-αHydroxycholesterol (20HC), in human maternal breast milk that induces oligodendrogenesis through a sonic hedgehog (shh), Gli-dependent mechanism. Following WMI in neonatal mice, injection of 20HC induced subventricular zone-derived oligodendrogenesis and improved myelination in the periventricular white matter, resulting in improved motor outcomes. Targeting the oligodendrogenic potential of postnatal NSPCs in neonates with WMIs may be further developed into a novel approach to mitigate this devastating complication of preterm birth.
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- 2023
12. T cell deletional tolerance restricts AQP4 but not MOG CNS autoimmunity
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Sagan, Sharon A, Moinfar, Zahra, Moseley, Carson E, Dandekar, Ravi, Spencer, Collin M, Verkman, Alan S, Ottersen, Ole Petter, Sobel, Raymond A, Sidney, John, Sette, Alessandro, Anderson, Mark S, Steinman, Lawrence, Wilson, Michael R, Sabatino, Joseph J, and Zamvil, Scott S
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Neurodegenerative ,Brain Disorders ,Multiple Sclerosis ,Autoimmune Disease ,Neurosciences ,2.1 Biological and endogenous factors ,Aetiology ,Animals ,Mice ,Aquaporin 4 ,Autoantibodies ,Autoimmunity ,Myelin-Oligodendrocyte Glycoprotein ,Neuromyelitis Optica ,Paralysis ,Receptors ,Antigen ,T-Cell ,Sjögren’s syndrome ,T cell tolerance ,aquaporin-4 ,molecular mimicry ,neuromyelitis optica - Abstract
Aquaporin-4 (AQP4)-specific Th17 cells are thought to have a central role in neuromyelitis optica (NMO) pathogenesis. When modeling NMO, only AQP4-reactive Th17 cells from AQP4-deficient (AQP4-/-), but not wild-type (WT) mice, caused CNS autoimmunity in recipient WT mice, indicating that a tightly regulated mechanism normally ensures tolerance to AQP4. Here, we found that pathogenic AQP4 T cell epitopes bind MHC II with exceptionally high affinity. Examination of T cell receptor (TCR) α/β usage revealed that AQP4-specific T cells from AQP4-/- mice employed a distinct TCR repertoire and exhibited clonal expansion. Selective thymic AQP4 deficiency did not fully restore AQP4-reactive T cells, demonstrating that thymic negative selection alone did not account for AQP4-specific tolerance in WT mice. Indeed, AQP4-specific Th17 cells caused paralysis in recipient WT or B cell-deficient mice, which was followed by complete recovery that was associated with apoptosis of donor T cells. However, donor AQP4-reactive T cells survived and caused persistent paralysis in recipient mice deficient in both T and B cells or mice lacking T cells only. Thus, AQP4 CNS autoimmunity was limited by T cell-dependent deletion of AQP4-reactive T cells. In contrast, myelin oligodendrocyte glycoprotein (MOG)-specific T cells survived and caused sustained disease in WT mice. These findings underscore the importance of peripheral T cell deletional tolerance to AQP4, which may be relevant to understanding the balance of AQP4-reactive T cells in health and in NMO. T cell tolerance to AQP4, expressed in multiple tissues, is distinct from tolerance to MOG, an autoantigen restricted in its expression.
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- 2023
13. Chromophore supply modulates cone function and survival in retinitis pigmentosa mouse models.
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Xue, Yunlu, Sun, Xiaomei, Wang, Sean, Collin, Gayle, Kefalov, Vladimir, and Cepko, Constance
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Alström syndrome ,cone photoreceptors ,retina ,retinitis pigmentosa ,visual cycle ,Mice ,Animals ,Retina ,Retinal Cone Photoreceptor Cells ,Retinal Rod Photoreceptor Cells ,Retinitis Pigmentosa ,Color Vision ,Disease Models ,Animal - Abstract
Retinitis pigmentosa (RP) is an ocular disease characterized by the loss of night vision, followed by the loss of daylight vision. Daylight vision is initiated in the retina by cone photoreceptors, which are gradually lost in RP, often as bystanders in a disease process that initiates in their neighboring rod photoreceptors. Using physiological assays, we investigated the timing of cone electroretinogram (ERG) decline in RP mouse models. A correlation between the time of loss of the cone ERG and the loss of rods was found. To investigate a potential role of the visual chromophore supply in this loss, mouse mutants with alterations in the regeneration of the retinal chromophore, 11-cis retinal, were examined. Reducing chromophore supply via mutations in Rlbp1 or Rpe65 resulted in greater cone function and survival in a RP mouse model. Conversely, overexpression of Rpe65 and Lrat, genes that can drive the regeneration of the chromophore, led to greater cone degeneration. These data suggest that abnormally high chromophore supply to cones upon the loss of rods is toxic to cones, and that a potential therapy in at least some forms of RP is to slow the turnover and/or reduce the level of visual chromophore in the retina.
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- 2023
14. Long-term effects of THC exposure on reward learning and motivated behavior in adolescent and adult male rats
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Halbout, Briac, Hutson, Collin, Hua, Leann, Inshishian, Victoria, Mahler, Stephen V, and Ostlund, Sean B
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Biological Psychology ,Psychology ,Substance Misuse ,Neurosciences ,Basic Behavioral and Social Science ,Behavioral and Social Science ,Pediatric ,Drug Abuse (NIDA only) ,Brain Disorders ,Mental health ,Rats ,Male ,Animals ,Dronabinol ,Endocannabinoids ,Learning ,Reward ,Motivation ,Cannabis ,Marijuana ,Addiction ,Habit ,Goal-directed action ,Emotion ,Eating ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Biological psychology - Abstract
RationaleThe endocannabinoid system makes critical contributions to reward processing, motivation, and behavioral control. Repeated exposure to THC or other cannabinoid drugs can cause persistent adaptions in the endocannabinoid system and associated neural circuitry. It remains unclear how such treatments affect the way rewards are processed and pursued.Objective and methodsWe examined if repeated THC exposure (5 mg/kg/day for 14 days) during adolescence or adulthood led to long-term changes in rats' capacity to flexibly encode and use action-outcome associations for goal-directed decision making. Effects on hedonic feeding and progressive ratio responding were also assessed.ResultsTHC exposure had no effect on rats' ability to flexibly select actions following reward devaluation. However, instrumental contingency degradation learning, which involves avoiding an action that is unnecessary for reward delivery, was augmented in rats with a history of adult but not adolescent THC exposure. THC-exposed rats also displayed more vigorous instrumental behavior in this study, suggesting a motivational enhancement. A separate experiment found that while THC exposure had no effect on hedonic feeding behavior, it increased rats' willingness to work for food on a progressive ratio schedule, an effect that was more pronounced when THC was administered to adults. Adolescent and adult THC exposure had opposing effects on the CB1 receptor dependence of progressive ratio performance, decreasing and increasing sensitivity to rimonabant-induced behavioral suppression, respectively.ConclusionsOur findings reveal that exposure to a translationally relevant THC exposure regimen induces long-lasting, age-dependent alterations in cognitive and motivational processes that regulate the pursuit of rewards.
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- 2023
15. Flexible control of Pavlovian-instrumental transfer based on expected reward value.
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Marshall, Andrew, Halbout, Briac, Munson, Christy, Hutson, Collin, and Ostlund, Sean
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Rats ,Animals ,Food ,Motivation ,Reward ,Cues ,Conditioning ,Classical ,Conditioning ,Operant - Abstract
The Pavlovian-instrumental transfer (PIT) paradigm is widely used to assay the motivational influence of reward-predictive cues, reflected by their ability to invigorate instrumental behavior. Leading theories assume that a cues motivational properties are tied to predicted reward value. We outline an alternative view that recognizes that reward-predictive cues may suppress rather than motivate instrumental behavior under certain conditions, an effect termed positive conditioned suppression. We posit that cues signaling imminent reward delivery tend to inhibit instrumental behavior, which is exploratory by nature, in order to facilitate efficient retrieval of the expected reward. According to this view, the motivation to engage in instrumental behavior during a cue should be inversely related to the value of the predicted reward, since there is more to lose by failing to secure a high-value reward than a low-value reward. We tested this hypothesis in rats using a PIT protocol known to induce positive conditioned suppression. In Experiment 1, cues signaling different reward magnitudes elicited distinct response patterns. Whereas the one-pellet cue increased instrumental behavior, cues signaling three or nine pellets suppressed instrumental behavior and elicited high levels of food-port activity. Experiment 2 found that reward-predictive cues suppressed instrumental behavior and increased food-port activity in a flexible manner that was disrupted by post-training reward devaluation. Further analyses suggest that these findings were not driven by overt competition between the instrumental and food-port responses. We discuss how the PIT task may provide a useful tool for studying cognitive control over cue-motivated behavior in rodents. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
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- 2023
16. Integrative Approaches to Understanding Organismal Responses to Aquatic Deoxygenation.
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Woods, H Arthur, Moran, Amy L, Atkinson, David, Audzijonyte, Asta, Berenbrink, Michael, Borges, Francisco O, Burnett, Karen G, Burnett, Louis E, Coates, Christopher J, Collin, Rachel, Costa-Paiva, Elisa M, Duncan, Murray I, Ern, Rasmus, Laetz, Elise MJ, Levin, Lisa A, Lindmark, Max, Lucey, Noelle M, McCormick, Lillian R, Pierson, James J, Rosa, Rui, Roman, Michael R, Sampaio, Eduardo, Schulte, Patricia M, Sperling, Erik A, Walczyńska, Aleksandra, and Verberk, Wilco CEP
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Biological Sciences ,Ecology ,Climate Action ,Animals ,Climate Change ,Aquatic Organisms ,Biological Evolution ,Oxygen ,Stress ,Physiological ,Ecosystem ,Biological sciences - Abstract
AbstractOxygen bioavailability is declining in aquatic systems worldwide as a result of climate change and other anthropogenic stressors. For aquatic organisms, the consequences are poorly known but are likely to reflect both direct effects of declining oxygen bioavailability and interactions between oxygen and other stressors, including two-warming and acidification-that have received substantial attention in recent decades and that typically accompany oxygen changes. Drawing on the collected papers in this symposium volume ("An Oxygen Perspective on Climate Change"), we outline the causes and consequences of declining oxygen bioavailability. First, we discuss the scope of natural and predicted anthropogenic changes in aquatic oxygen levels. Although modern organisms are the result of long evolutionary histories during which they were exposed to natural oxygen regimes, anthropogenic change is now exposing them to more extreme conditions and novel combinations of low oxygen with other stressors. Second, we identify behavioral and physiological mechanisms that underlie the interactive effects of oxygen with other stressors, and we assess the range of potential organismal responses to oxygen limitation that occur across levels of biological organization and over multiple timescales. We argue that metabolism and energetics provide a powerful and unifying framework for understanding organism-oxygen interactions. Third, we conclude by outlining a set of approaches for maximizing the effectiveness of future work, including focusing on long-term experiments using biologically realistic variation in experimental factors and taking truly cross-disciplinary and integrative approaches to understanding and predicting future effects.
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- 2022
17. Small-molecule targeted therapies induce dependence on DNA double-strand break repair in residual tumor cells
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Ali, Moiez, Lu, Min, Ang, Hazel Xiaohui, Soderquist, Ryan S, Eyler, Christine E, Hutchinson, Haley M, Glass, Carolyn, Bassil, Christopher F, Lopez, Omar M, Kerr, D Lucas, Falcon, Christina J, Yu, Helena A, Hata, Aaron N, Blakely, Collin M, McCoach, Caroline E, Bivona, Trever G, and Wood, Kris C
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Cancer ,Ataxia Telangiectasia ,Rare Diseases ,Neurodegenerative ,Genetics ,Lung ,Lung Cancer ,Development of treatments and therapeutic interventions ,2.1 Biological and endogenous factors ,5.1 Pharmaceuticals ,Aetiology ,Animals ,Carcinoma ,Non-Small-Cell Lung ,DNA ,DNA Repair ,Humans ,Lung Neoplasms ,Mice ,Neoplasm ,Residual ,Biological Sciences ,Medical and Health Sciences ,Medical biotechnology ,Biomedical engineering - Abstract
Residual cancer cells that survive drug treatments with targeted therapies act as a reservoir from which eventual resistant disease emerges. Although there is great interest in therapeutically targeting residual cells, efforts are hampered by our limited knowledge of the vulnerabilities existing in this cell state. Here, we report that diverse oncogene-targeted therapies, including inhibitors of epidermal growth factor receptor (EGFR), anaplastic lymphoma kinase (ALK), KRAS, and BRAF, induce DNA double-strand breaks and, consequently, ataxia-telangiectasia mutated (ATM)-dependent DNA repair in oncogene-matched residual tumor cells. This DNA damage response, observed in cell lines, mouse xenograft models, and human patients, is driven by a pathway involving the activation of caspases 3 and 7 and the downstream caspase-activated deoxyribonuclease (CAD). CAD is, in turn, activated through caspase-mediated degradation of its endogenous inhibitor, ICAD. In models of EGFR mutant non-small cell lung cancer (NSCLC), tumor cells that survive treatment with small-molecule EGFR-targeted therapies are thus synthetically dependent on ATM, and combined treatment with an ATM kinase inhibitor eradicates these cells in vivo. This led to more penetrant and durable responses in EGFR mutant NSCLC mouse xenograft models, including those derived from both established cell lines and patient tumors. Last, we found that rare patients with EGFR mutant NSCLC harboring co-occurring, loss-of-function mutations in ATM exhibit extended progression-free survival on first generation EGFR inhibitor therapy relative to patients with EGFR mutant NSCLC lacking deleterious ATM mutations. Together, these findings establish a rationale for the mechanism-based integration of ATM inhibitors alongside existing targeted therapies.
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- 2022
18. The biogeography of community assembly: latitude and predation drive variation in community trait distribution in a guild of epifaunal crustaceans
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Gross, Collin P, Duffy, J Emmett, Hovel, Kevin A, Kardish, Melissa R, Reynolds, Pamela L, Boström, Christoffer, Boyer, Katharyn E, Cusson, Mathieu, Eklöf, Johan, Engelen, Aschwin H, Eriksson, Britas Klemens, Fodrie, F Joel, Griffin, John N, Hereu, Clara M, Hori, Masakazu, Hughes, A Randall, Ivanov, Mikhail V, Jorgensen, Pablo, Kruschel, Claudia, Lee, Kun-Seop, Lefcheck, Jonathan, McGlathery, Karen, Moksnes, Per-Olav, Nakaoka, Masahiro, O'Connor, Mary I, O'Connor, Nessa E, Olsen, Jeanine L, Orth, Robert J, Peterson, Bradley J, Reiss, Henning, Rossi, Francesca, Ruesink, Jennifer, Sotka, Erik E, Thormar, Jonas, Tomas, Fiona, Unsworth, Richard, Voigt, Erin P, Whalen, Matthew A, Ziegler, Shelby L, and Stachowicz, John J
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Animals ,Crustacea ,Ecosystem ,Oceans and Seas ,Predatory Behavior ,Zosteraceae ,community assembly ,functional traits ,latitudinal gradient ,predation ,historical contingency ,eelgrass epifauna ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences - Abstract
While considerable evidence exists of biogeographic patterns in the intensity of species interactions, the influence of these patterns on variation in community structure is less clear. Studying how the distributions of traits in communities vary along global gradients can inform how variation in interactions and other factors contribute to the process of community assembly. Using a model selection approach on measures of trait dispersion in crustaceans associated with eelgrass (Zostera marina) spanning 30° of latitude in two oceans, we found that dispersion strongly increased with increasing predation and decreasing latitude. Ocean and epiphyte load appeared as secondary predictors; Pacific communities were more overdispersed while Atlantic communities were more clustered, and increasing epiphytes were associated with increased clustering. By examining how species interactions and environmental filters influence community structure across biogeographic regions, we demonstrate how both latitudinal variation in species interactions and historical contingency shape these responses. Community trait distributions have implications for ecosystem stability and functioning, and integrating large-scale observations of environmental filters, species interactions and traits can help us predict how communities may respond to environmental change.
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- 2022
19. Microglia Do Not Restrict SARS-CoV-2 Replication following Infection of the Central Nervous System of K18-Human ACE2 Transgenic Mice
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Olivarria, Gema M, Cheng, Yuting, Furman, Susana, Pachow, Collin, Hohsfield, Lindsay A, Smith-Geater, Charlene, Miramontes, Ricardo, Wu, Jie, Burns, Mara S, Tsourmas, Kate I, Stocksdale, Jennifer, Manlapaz, Cynthia, Yong, William H, Teijaro, John, Edwards, Robert, Green, Kim N, Thompson, Leslie M, and Lane, Thomas E
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Medical Microbiology ,Biomedical and Clinical Sciences ,Immunology ,Neurosciences ,Vaccine Related ,Biodefense ,Lung ,Emerging Infectious Diseases ,Infectious Diseases ,Prevention ,Pneumonia ,2.1 Biological and endogenous factors ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Good Health and Well Being ,Angiotensin-Converting Enzyme 2 ,Animals ,COVID-19 ,Central Nervous System ,Central Nervous System Viral Diseases ,Chemokines ,Disease Models ,Animal ,Humans ,Mice ,Mice ,Transgenic ,Microglia ,Neurons ,SARS-CoV-2 ,Virus Replication ,microglia ,central nervous system ,neuropathology ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences ,Virology ,Agricultural ,veterinary and food sciences ,Biological sciences ,Biomedical and clinical sciences - Abstract
Unlike SARS-CoV-1 and MERS-CoV, infection with SARS-CoV-2, the viral pathogen responsible for COVID-19, is often associated with neurologic symptoms that range from mild to severe, yet increasing evidence argues the virus does not exhibit extensive neuroinvasive properties. We demonstrate SARS-CoV-2 can infect and replicate in human iPSC-derived neurons and that infection shows limited antiviral and inflammatory responses but increased activation of EIF2 signaling following infection as determined by RNA sequencing. Intranasal infection of K18 human ACE2 transgenic mice (K18-hACE2) with SARS-CoV-2 resulted in lung pathology associated with viral replication and immune cell infiltration. In addition, ∼50% of infected mice exhibited CNS infection characterized by wide-spread viral replication in neurons accompanied by increased expression of chemokine (Cxcl9, Cxcl10, Ccl2, Ccl5 and Ccl19) and cytokine (Ifn-λ and Tnf-α) transcripts associated with microgliosis and a neuroinflammatory response consisting primarily of monocytes/macrophages. Microglia depletion via administration of colony-stimulating factor 1 receptor inhibitor, PLX5622, in SARS-CoV-2 infected mice did not affect survival or viral replication but did result in dampened expression of proinflammatory cytokine/chemokine transcripts and a reduction in monocyte/macrophage infiltration. These results argue that microglia are dispensable in terms of controlling SARS-CoV-2 replication in in the K18-hACE2 model but do contribute to an inflammatory response through expression of pro-inflammatory genes. Collectively, these findings contribute to previous work demonstrating the ability of SARS-CoV-2 to infect neurons as well as emphasizing the potential use of the K18-hACE2 model to study immunological and neuropathological aspects related to SARS-CoV-2-induced neurologic disease. IMPORTANCE Understanding the immunological mechanisms contributing to both host defense and disease following viral infection of the CNS is of critical importance given the increasing number of viruses that are capable of infecting and replicating within the nervous system. With this in mind, the present study was undertaken to evaluate the role of microglia in aiding in host defense following experimental infection of the central nervous system (CNS) of K18-hACE2 with SARS-CoV-2, the causative agent of COVID-19. Neurologic symptoms that range in severity are common in COVID-19 patients and understanding immune responses that contribute to restricting neurologic disease can provide important insight into better understanding consequences associated with SARS-CoV-2 infection of the CNS.
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- 2022
20. Regulation of neuronal excitation–transcription coupling by Kv2.1-induced clustering of somatic L-type Ca2+ channels at ER-PM junctions
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Vierra, Nicholas C, O’Dwyer, Samantha C, Matsumoto, Collin, Santana, L Fernando, and Trimmer, James S
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Medical Physiology ,Biomedical and Clinical Sciences ,Genetics ,Neurosciences ,1.1 Normal biological development and functioning ,Underpinning research ,Neurological ,Animals ,Calcium Channels ,L-Type ,Cell Membrane ,Cells ,Cultured ,Dendrites ,Endoplasmic Reticulum ,Female ,HEK293 Cells ,Hippocampus ,Humans ,Male ,Mice ,Neurons ,Phosphorylation ,Rats ,Shab Potassium Channels ,Transcription ,Genetic ,calcium signaling ,membrane contact sites ,excitation-transcription coupling ,voltage-gated calcium channels ,voltage-gated potassium channels ,excitation–transcription coupling - Abstract
In mammalian brain neurons, membrane depolarization leads to voltage-gated Ca2+ channel-mediated Ca2+ influx that triggers diverse cellular responses, including gene expression, in a process termed excitation-transcription coupling. Neuronal L-type Ca2+ channels, which have prominent populations on the soma and distal dendrites of hippocampal neurons, play a privileged role in excitation-transcription coupling. The voltage-gated K+ channel Kv2.1 organizes signaling complexes containing the L-type Ca2+ channel Cav1.2 at somatic endoplasmic reticulum-plasma membrane junctions. This leads to enhanced clustering of Cav1.2 channels, increasing their activity. However, the downstream consequences of the Kv2.1-mediated regulation of Cav1.2 localization and function on excitation-transcription coupling are not known. Here, we have identified a region between residues 478 to 486 of Kv2.1's C terminus that mediates the Kv2.1-dependent clustering of Cav1.2. By disrupting this Ca2+ channel association domain with either mutations or with a cell-penetrating interfering peptide, we blocked the Kv2.1-mediated clustering of Cav1.2 at endoplasmic reticulum-plasma membrane junctions and the subsequent enhancement of its channel activity and somatic Ca2+ signals without affecting the clustering of Kv2.1. These interventions abolished the depolarization-induced and L-type Ca2+ channel-dependent phosphorylation of the transcription factor CREB and the subsequent expression of c-Fos in hippocampal neurons. Our findings support a model whereby the Kv2.1-Ca2+ channel association domain-mediated clustering of Cav1.2 channels imparts a mechanism to control somatic Ca2+ signals that couple neuronal excitation to gene expression.
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- 2021
21. Improved draft reference genome for the Glassy-winged Sharpshooter (Homalodisca vitripennis), a vector for Pierce's disease
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Ettinger, Cassandra L, Byrne, Frank J, Collin, Matthew A, Carter-House, Derreck, Walling, Linda L, Atkinson, Peter W, Redak, Rick A, and Stajich, Jason E
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Biotechnology ,Genetics ,Animals ,Genome ,Insect ,Hemiptera ,Metagenome ,Pilot Projects ,Xylella ,Glassy-winged sharpshooter ,leafhopper ,Homalodisca vitripennis ,insect vector ,genome assembly ,genome annotation ,Wolbachia ,endosymbionts - Abstract
Homalodisca vitripennis (Hemiptera: Cicadellidae), known as the glassy-winged sharpshooter, is a xylem feeding leafhopper and an important agricultural pest as a vector of Xylella fastidiosa, which causes Pierce's disease in grapes and a variety of other scorch diseases. The current H. vitripennis reference genome from the Baylor College of Medicine's i5k pilot project is a 1.4-Gb assembly with 110,000 scaffolds, which still has significant gaps making identification of genes difficult. To improve on this effort, we used a combination of Oxford Nanopore long-read sequencing technology combined with Illumina sequencing reads to generate a better assembly and first-pass annotation of the whole genome sequence of a wild-caught Californian (Tulare County) individual of H. vitripennis. The improved reference genome assembly for H. vitripennis is 1.93-Gb in length (21,254 scaffolds, N50 = 650 Mb, BUSCO completeness = 94.3%), with 33.06% of the genome masked as repetitive. In total, 108,762 gene models were predicted including 98,296 protein-coding genes and 10,466 tRNA genes. As an additional community resource, we identified 27 orthologous candidate genes of interest for future experimental work including phenotypic marker genes like white. Furthermore, as part of the assembly process, we generated four endosymbiont metagenome-assembled genomes, including a high-quality near complete 1.7-Mb Wolbachia sp. genome (1 scaffold, CheckM completeness = 99.4%). The improved genome assembly and annotation for H. vitripennis, curated set of candidate genes, and endosymbiont MAGs will be invaluable resources for future research of H. vitripennis.
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- 2021
22. Genomic and anatomical comparisons of skin support independent adaptation to life in water by cetaceans and hippos
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Springer, Mark S, Guerrero-Juarez, Christian F, Huelsmann, Matthias, Collin, Matthew A, Danil, Kerri, McGowen, Michael R, Oh, Ji Won, Ramos, Raul, Hiller, Michael, Plikus, Maksim V, and Gatesy, John
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Biological Sciences ,Evolutionary Biology ,Genetics ,Human Genome ,Generic health relevance ,Animals ,Artiodactyla ,Biological Evolution ,Cetacea ,Genome ,Genomics ,Phylogeny ,Skin ,Water ,Hippopotamidae ,epidermis ,gene loss ,histology ,keratin ,skin ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences ,Psychology - Abstract
The macroevolutionary transition from terra firma to obligatory inhabitance of the marine hydrosphere has occurred twice in the history of Mammalia: Cetacea and Sirenia. In the case of Cetacea (whales, dolphins, and porpoises), molecular phylogenies provide unambiguous evidence that fully aquatic cetaceans and semiaquatic hippopotamids (hippos) are each other's closest living relatives. Ancestral reconstructions suggest that some adaptations to the aquatic realm evolved in the common ancestor of Cetancodonta (Cetacea + Hippopotamidae). An alternative hypothesis is that these adaptations evolved independently in cetaceans and hippos. Here, we focus on the integumentary system and evaluate these hypotheses by integrating new histological data for cetaceans and hippos, the first genome-scale data for pygmy hippopotamus, and comprehensive genomic screens and molecular evolutionary analyses for protein-coding genes that have been inactivated in hippos and cetaceans. We identified eight skin-related genes that are inactivated in both cetaceans and hippos, including genes that are related to sebaceous glands, hair follicles, and epidermal differentiation. However, none of these genes exhibit inactivating mutations that are shared by cetaceans and hippos. Mean dates for the inactivation of skin genes in these two clades serve as proxies for phenotypic changes and suggest that hair reduction/loss, the loss of sebaceous glands, and changes to the keratinization program occurred ∼16 Ma earlier in cetaceans (∼46.5 Ma) than in hippos (∼30.5 Ma). These results, together with histological differences in the integument and prior analyses of oxygen isotopes from stem hippopotamids ("anthracotheres"), support the hypothesis that aquatic skin adaptations evolved independently in hippos and cetaceans.
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- 2021
23. In vivo emergence of beige-like fat in chickens as physiological adaptation to cold environments
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Sotome, Rina, Hirasawa, Akira, Kikusato, Motoi, Amo, Taku, Furukawa, Kyohei, Kuriyagawa, Anna, Watanabe, Kouichi, Collin, Anne, Shirakawa, Hitoshi, Hirakawa, Ryota, Tanitaka, Yuta, Takahashi, Hideki, Wu, Guoyao, Nochi, Tomonori, Shimmura, Tsuyoshi, Warden, Craig H, and Toyomizu, Masaaki
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Medical Biochemistry and Metabolomics ,Biomedical and Clinical Sciences ,Medicinal and Biomolecular Chemistry ,Chemical Sciences ,Underpinning research ,1.1 Normal biological development and functioning ,Abdominal Fat ,Acclimatization ,Adipocytes ,Beige ,Adipose Tissue ,Animals ,Body Weight ,Chickens ,Cold Temperature ,Eating ,Mitochondria ,Neck ,Subcutaneous Fat ,Thermogenesis ,Triiodothyronine ,Uncoupling Protein 1 ,Voltage-Dependent Anion Channels ,Avian models ,avUCP ,Beige fat ,Cold adaptation ,Biochemistry & Molecular Biology ,Medical biochemistry and metabolomics ,Medicinal and biomolecular chemistry - Abstract
While it has been hypothesized that brown adipocytes responsible for mammalian thermogenesis are absent in birds, the existence of beige fat has yet to be studied directly. The present study tests the hypothesis that beige fat emerges in birds as a mechanism of physiological adaptation to cold environments. Subcutaneous neck adipose tissue from cold-acclimated or triiodothyronine (T3)-treated chickens exhibited increases in the expression of avian uncoupling protein (avUCP, an ortholog of mammalian UCP2 and UCP3) gene and some known mammalian beige adipocyte-specific markers. Morphological characteristics of white adipose tissues of treated chickens showed increased numbers of both small and larger clusters of multilocular fat cells within the tissues. Increases in protein levels of avUCP and mitochondrial marker protein, voltage-dependent anion channel, and immunohistochemical analysis for subcutaneous neck fat revealed the presence of potentially thermogenic mitochondria-rich cells. This is the first evidence that the capacity for thermogenesis may be acquired by differentiating adipose tissue into beige-like fat for maintaining temperature homeostasis in the subcutaneous fat 'neck warmer' in chickens exposed to a cold environment.
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- 2021
24. Early detection of tumor cells in bone marrow and peripheral blood in a fast‑progressing gastric cancer model.
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Bali, Prerna, Lozano-Pope, Ivonne, Pachow, Collin, and Obonyo, Marygorret
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bone marrow ,circulating tumor cells ,gastric cancer ,Helicobacter ,MyD88 ,peripheral blood ,Animals ,Biomarkers ,Tumor ,Bone Marrow ,Cell Line ,Tumor ,Disease Models ,Animal ,Disease Progression ,Gastric Mucosa ,Helicobacter Infections ,Helicobacter felis ,Humans ,Male ,Mice ,Mice ,Knockout ,Myeloid Differentiation Factor 88 ,Neoplastic Cells ,Circulating ,Neoplastic Stem Cells ,Stomach Neoplasms - Abstract
Helicobacter pylori (H. pylori) infection is a major risk factor for the development of gastric cancer. The authors previously demonstrated that in mice deficient in myeloid differentiation primary response 88 (Myd88‑/‑), infection with Helicobacter felis (H. felis) a close relative of H. pylori, subsequently rapidly progressed to neoplasia. The present study examined circulating tumor cells (CTCs) by measuring the expression of cytokeratins, epithelial‑to‑mesenchymal transition (EMT)‑related markers and cancer stem cell (CSC) markers in bone marrow and peripheral blood from Myd88‑/‑ and wild‑type (WT) mice. Cytokeratins CK8/18 were detected as early as 4 months post‑infection in Myd88‑/‑ mice. By contrast, cytokeratins were not detected in WT mice even after 7 months post‑infection. The expression of Mucin‑1 (MUC1) was observed in both bone marrow and peripheral blood at different time points, suggesting its role in gastric cancer metastasis. Snail, Twist and ZEB were expressed at different levels in bone marrow and peripheral blood. The expression of these EMT‑related markers suggests the manifestation of cancer metastasis in the early stages of disease development. LGR5, CD44 and CD133 were the most prominent CSC markers detected. The detection of CSC and EMT markers along with cytokeratins does reinforce their use as biomarkers for gastric cancer metastasis. This early detection of markers suggests that CTCs leave primary site even before cancer is well established. Thus, cytokeratins, EMT, and CSCs could be used as biomarkers to detect aggressive forms of gastric cancers. This information may prove to be of significance in stratifying patients for treatment prior to the onset of severe disease‑related characteristics.
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- 2021
25. Sildenafil-evoked photoreceptor oxidative stress in vivo is unrelated to impaired visual performance in mice
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Berkowitz, Bruce A, Podolsky, Robert H, Childers, Karen Lins, Saadane, Aicha, Kern, Timothy S, Roberts, Robin, Olds, Hailey, Joy, Joydip, Richards, Collin, Rosales, Tilman, Schneider, Michael, Schilling, Brennan, Orchanian, Arthur, Graffice, Emma, Sinan, Kenan, Qian, Haohua, and Harp, Lamis
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Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Eye Disease and Disorders of Vision ,Neurosciences ,Biomedical Imaging ,Eye ,Animals ,Male ,Mice ,Mice ,Inbred C57BL ,Oxidative Stress ,Phosphodiesterase Inhibitors ,Photoreceptor Cells ,Sildenafil Citrate ,Vision ,Ocular ,General Science & Technology - Abstract
PurposeThe phosphodiesterase inhibitor sildenafil is a promising treatment for neurodegenerative disease, but it can cause oxidative stress in photoreceptors ex vivo and degrade visual performance in humans. Here, we test the hypotheses that in wildtype mice sildenafil causes i) wide-spread photoreceptor oxidative stress in vivo that is linked with ii) impaired vision.MethodsIn dark or light-adapted C57BL/6 mice ± sildenafil treatment, the presence of oxidative stress was evaluated in retina laminae in vivo by QUEnch-assiSTed (QUEST) magnetic resonance imaging, in the subretinal space in vivo by QUEST optical coherence tomography, and in freshly excised retina by a dichlorofluorescein assay. Visual performance indices were also evaluated by QUEST optokinetic tracking.ResultsIn light-adapted mice, 1 hr post-sildenafil administration, oxidative stress was most evident in the superior peripheral outer retina on both in vivo and ex vivo examinations; little evidence was noted for central retina oxidative stress in vivo and ex vivo. In dark-adapted mice 1 hr after sildenafil, no evidence for outer retina oxidative stress was found in vivo. Evidence for sildenafil-induced central retina rod cGMP accumulation was suggested as a panretinally thinner, dark-like subretinal space thickness in light-adapted mice at 1 hr but not 5 hr post-sildenafil. Cone-based visual performance was impaired by 5 hr post-sildenafil and not corrected with anti-oxidants; vision was normal at 1 hr and 24 hr post-sildenafil.ConclusionsThe sildenafil-induced spatiotemporal pattern of oxidative stress in photoreceptors dominated by rods was unrelated to impairment of cone-based visual performance in wildtype mice.
- Published
- 2021
26. 3D Visualization of Immune Cell Populations in HIV-Infected Tissues via Clearing, Immunostaining, Confocal, and Light Sheet Fluorescence Microscopy.
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Zhang, Tongyu, Gupta, Auroni, Frederick, Deborah, Layman, Laura, Smith, Davey M, Gianella, Sara, and Kieffer, Collin
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Biochemistry and Cell Biology ,Biological Sciences ,Sexually Transmitted Infections ,HIV/AIDS ,Biomedical Imaging ,Bioengineering ,Infectious Diseases ,2.1 Biological and endogenous factors ,Infection ,Good Health and Well Being ,Animals ,HIV Infections ,Histological Techniques ,Humans ,Image Processing ,Computer-Assisted ,Imaging ,Three-Dimensional ,Microscopy ,Confocal ,Microscopy ,Fluorescence ,Psychology ,Cognitive Sciences ,Biochemistry and cell biology - Abstract
Human Immunodeficiency Virus (HIV), the causative agent of Acquired Immune Deficiency Syndrome (AIDS), is a major global health concern with nearly 40 million individuals infected worldwide and no widely accessible cure. Despite intensive efforts, a detailed understanding of virus and host cell interactions in tissues during infection and in response to therapy remains incomplete. To address these limitations, water-based tissue clearing techniques CUBIC (Clear, Unobstructed Brain/Body Imaging Cocktails and Computational analysis) and CLARITY (Clear Lipid-exchanged Acrylamide-hybridized Rigid Imaging/Immunostaining/in situ-hybridization-compatible Tissue hYdrogel) are applied to visualize complex virus host-cell interactions in HIV-infected tissues from animal models and humans using confocal and light sheet fluorescence microscopy. Optical sectioning of intact tissues and image analysis allows rapid reconstruction of spatial information contained within whole tissues and quantification of immune cell populations during infection. These methods are applicable to most tissue sources and diverse biological questions, including infectious disease and cancer.
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- 2021
27. PCARE and WASF3 regulate ciliary F-actin assembly that is required for the initiation of photoreceptor outer segment disk formation.
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Corral-Serrano, Julio, Lamers, Ideke, van Reeuwijk, Jeroen, Duijkers, Lonneke, Hoogendoorn, Anita, Yildirim, Adem, Argyrou, Nikoleta, Ruigrok, Renate, Letteboer, Stef, Butcher, Rossano, van Essen, Max, Sakami, Sanae, van Beersum, Sylvia, Palczewski, Krzysztof, Cheetham, Michael, Liu, Qin, Boldt, Karsten, Wolfrum, Uwe, Ueffing, Marius, Garanto, Alejandro, Roepman, Ronald, and Collin, Rob
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actin ,cilium ,outer segments ,photoreceptor ,retinitis pigmentosa ,Actin-Related Protein 2-3 Complex ,Actins ,Animals ,Cilia ,Cone-Rod Dystrophies ,Disease Models ,Animal ,Eye Proteins ,Gene Expression Regulation ,Humans ,Mice ,Mice ,Knockout ,RNA ,Small Interfering ,Retinal Cone Photoreceptor Cells ,Rod Cell Outer Segment ,Wiskott-Aldrich Syndrome Protein Family - Abstract
The outer segments (OS) of rod and cone photoreceptor cells are specialized sensory cilia that contain hundreds of opsin-loaded stacked membrane disks that enable phototransduction. The biogenesis of these disks is initiated at the OS base, but the driving force has been debated. Here, we studied the function of the protein encoded by the photoreceptor-specific gene C2orf71, which is mutated in inherited retinal dystrophy (RP54). We demonstrate that C2orf71/PCARE (photoreceptor cilium actin regulator) can interact with the Arp2/3 complex activator WASF3, and efficiently recruits it to the primary cilium. Ectopic coexpression of PCARE and WASF3 in ciliated cells results in the remarkable expansion of the ciliary tip. This process was disrupted by small interfering RNA (siRNA)-based down-regulation of an actin regulator, by pharmacological inhibition of actin polymerization, and by the expression of PCARE harboring a retinal dystrophy-associated missense mutation. Using human retinal organoids and mouse retina, we observed that a similar actin dynamics-driven process is operational at the base of the photoreceptor OS where the PCARE module and actin colocalize, but which is abrogated in Pcare-/- mice. The observation that several proteins involved in retinal ciliopathies are translocated to these expansions renders it a potential common denominator in the pathomechanisms of these hereditary disorders. Together, our work suggests that PCARE is an actin-associated protein that interacts with WASF3 to regulate the actin-driven expansion of the ciliary membrane at the initiation of new outer segment disk formation.
- Published
- 2020
28. LRP1 is a master regulator of tau uptake and spread
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Rauch, Jennifer N, Luna, Gabriel, Guzman, Elmer, Audouard, Morgane, Challis, Collin, Sibih, Youssef E, Leshuk, Carolina, Hernandez, Israel, Wegmann, Susanne, Hyman, Bradley T, Gradinaru, Viviana, Kampmann, Martin, and Kosik, Kenneth S
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Biochemistry and Cell Biology ,Biological Sciences ,Brain Disorders ,Emerging Infectious Diseases ,Neurosciences ,Alzheimer's Disease ,Dementia ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Frontotemporal Dementia (FTD) ,Acquired Cognitive Impairment ,Neurodegenerative ,Aging ,Alzheimer's Disease Related Dementias (ADRD) ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Animals ,Cell Line ,Endocytosis ,Female ,Humans ,Ligands ,Low Density Lipoprotein Receptor-Related Protein-1 ,Male ,Mice ,Neurons ,tau Proteins ,General Science & Technology - Abstract
The spread of protein aggregates during disease progression is a common theme underlying many neurodegenerative diseases. The microtubule-associated protein tau has a central role in the pathogenesis of several forms of dementia known as tauopathies-including Alzheimer's disease, frontotemporal dementia and chronic traumatic encephalopathy1. Progression of these diseases is characterized by the sequential spread and deposition of protein aggregates in a predictable pattern that correlates with clinical severity2. This observation and complementary experimental studies3,4 have suggested that tau can spread in a prion-like manner, by passing to naive cells in which it templates misfolding and aggregation. However, although the propagation of tau has been extensively studied, the underlying cellular mechanisms remain poorly understood. Here we show that the low-density lipoprotein receptor-related protein 1 (LRP1) controls the endocytosis of tau and its subsequent spread. Knockdown of LRP1 significantly reduced tau uptake in H4 neuroglioma cells and in induced pluripotent stem cell-derived neurons. The interaction between tau and LRP1 is mediated by lysine residues in the microtubule-binding repeat region of tau. Furthermore, downregulation of LRP1 in an in vivo mouse model of tau spread was found to effectively reduce the propagation of tau between neurons. Our results identify LRP1 as a key regulator of tau spread in the brain, and therefore a potential target for the treatment of diseases that involve tau spread and aggregation.
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- 2020
29. Kv2.1 channels play opposing roles in regulating membrane potential, Ca2+ channel function, and myogenic tone in arterial smooth muscle
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O’Dwyer, Samantha C, Palacio, Stephanie, Matsumoto, Collin, Guarina, Laura, Klug, Nicholas R, Tajada, Sendoa, Rosati, Barbara, McKinnon, David, Trimmer, James S, and Santana, L Fernando
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Medical Physiology ,Biomedical and Clinical Sciences ,Women's Health ,Underpinning research ,1.1 Normal biological development and functioning ,Animals ,Arteries ,Calcium ,Calcium Channels ,L-Type ,Cells ,Cultured ,Female ,Male ,Membrane Potentials ,Mice ,Inbred C57BL ,Mice ,Knockout ,Muscle ,Smooth ,Vascular ,Myocytes ,Smooth Muscle ,Shab Potassium Channels ,voltage-gated calcium channels ,voltage-gated potassium channels ,calcium channel clustering - Abstract
The accepted role of the protein Kv2.1 in arterial smooth muscle cells is to form K+ channels in the sarcolemma. Opening of Kv2.1 channels causes membrane hyperpolarization, which decreases the activity of L-type CaV1.2 channels, lowering intracellular Ca2+ ([Ca2+]i) and causing smooth muscle relaxation. A limitation of this model is that it is based exclusively on data from male arterial myocytes. Here, we used a combination of electrophysiology as well as imaging approaches to investigate the role of Kv2.1 channels in male and female arterial myocytes. We confirmed that Kv2.1 plays a canonical conductive role but found it also has a structural role in arterial myocytes to enhance clustering of CaV1.2 channels. Less than 1% of Kv2.1 channels are conductive and induce membrane hyperpolarization. Paradoxically, by enhancing the structural clustering and probability of CaV1.2-CaV1.2 interactions within these clusters, Kv2.1 increases Ca2+ influx. These functional impacts of Kv2.1 depend on its level of expression, which varies with sex. In female myocytes, where expression of Kv2.1 protein is higher than in male myocytes, Kv2.1 has conductive and structural roles. Female myocytes have larger CaV1.2 clusters, larger [Ca2+]i, and larger myogenic tone than male myocytes. In contrast, in male myocytes, Kv2.1 channels regulate membrane potential but not CaV1.2 channel clustering. We propose a model in which Kv2.1 function varies with sex: in males, Kv2.1 channels control membrane potential but, in female myocytes, Kv2.1 plays dual electrical and CaV1.2 clustering roles. This contributes to sex-specific regulation of excitability, [Ca2+]i, and myogenic tone in arterial myocytes.
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- 2020
30. A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice.
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Sampson, Timothy R, Challis, Collin, Jain, Neha, Moiseyenko, Anastasiya, Ladinsky, Mark S, Shastri, Gauri G, Thron, Taren, Needham, Brittany D, Horvath, Istvan, Debelius, Justine W, Janssen, Stefan, Knight, Rob, Wittung-Stafshede, Pernilla, Gradinaru, Viviana, Chapman, Matthew, and Mazmanian, Sarkis K
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Animals ,Mice ,Escherichia coli ,Gastrointestinal Diseases ,Brain Diseases ,Escherichia coli Proteins ,alpha-Synuclein ,Synucleinopathies ,Curli ,E. coli ,alpha-synuclein ,infectious disease ,microbiology ,microbiome ,mouse ,neuroscience ,Biochemistry and Cell Biology - Abstract
Amyloids are a class of protein with unique self-aggregation properties, and their aberrant accumulation can lead to cellular dysfunctions associated with neurodegenerative diseases. While genetic and environmental factors can influence amyloid formation, molecular triggers and/or facilitators are not well defined. Growing evidence suggests that non-identical amyloid proteins may accelerate reciprocal amyloid aggregation in a prion-like fashion. While humans encode ~30 amyloidogenic proteins, the gut microbiome also produces functional amyloids. For example, curli are cell surface amyloid proteins abundantly expressed by certain gut bacteria. In mice overexpressing the human amyloid α-synuclein (αSyn), we reveal that colonization with curli-producing Escherichia coli promotes αSyn pathology in the gut and the brain. Curli expression is required for E. coli to exacerbate αSyn-induced behavioral deficits, including intestinal and motor impairments. Purified curli subunits accelerate αSyn aggregation in biochemical assays, while oral treatment of mice with a gut-restricted amyloid inhibitor prevents curli-mediated acceleration of pathology and behavioral abnormalities. We propose that exposure to microbial amyloids in the gastrointestinal tract can accelerate αSyn aggregation and disease in the gut and the brain.
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- 2020
31. Kv2.1 channels play opposing roles in regulating membrane potential, Ca2+ channel function, and myogenic tone in arterial smooth muscle.
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O'Dwyer, Samantha C, Palacio, Stephanie, Matsumoto, Collin, Guarina, Laura, Klug, Nicholas R, Tajada, Sendoa, Rosati, Barbara, McKinnon, David, Trimmer, James S, and Santana, L Fernando
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Muscle ,Smooth ,Vascular ,Arteries ,Cells ,Cultured ,Myocytes ,Smooth Muscle ,Animals ,Mice ,Inbred C57BL ,Mice ,Knockout ,Calcium ,Calcium Channels ,L-Type ,Membrane Potentials ,Female ,Male ,Shab Potassium Channels ,calcium channel clustering ,voltage-gated calcium channels ,voltage-gated potassium channels - Abstract
The accepted role of the protein Kv2.1 in arterial smooth muscle cells is to form K+ channels in the sarcolemma. Opening of Kv2.1 channels causes membrane hyperpolarization, which decreases the activity of L-type CaV1.2 channels, lowering intracellular Ca2+ ([Ca2+]i) and causing smooth muscle relaxation. A limitation of this model is that it is based exclusively on data from male arterial myocytes. Here, we used a combination of electrophysiology as well as imaging approaches to investigate the role of Kv2.1 channels in male and female arterial myocytes. We confirmed that Kv2.1 plays a canonical conductive role but found it also has a structural role in arterial myocytes to enhance clustering of CaV1.2 channels. Less than 1% of Kv2.1 channels are conductive and induce membrane hyperpolarization. Paradoxically, by enhancing the structural clustering and probability of CaV1.2-CaV1.2 interactions within these clusters, Kv2.1 increases Ca2+ influx. These functional impacts of Kv2.1 depend on its level of expression, which varies with sex. In female myocytes, where expression of Kv2.1 protein is higher than in male myocytes, Kv2.1 has conductive and structural roles. Female myocytes have larger CaV1.2 clusters, larger [Ca2+]i, and larger myogenic tone than male myocytes. In contrast, in male myocytes, Kv2.1 channels regulate membrane potential but not CaV1.2 channel clustering. We propose a model in which Kv2.1 function varies with sex: in males, Kv2.1 channels control membrane potential but, in female myocytes, Kv2.1 plays dual electrical and CaV1.2 clustering roles. This contributes to sex-specific regulation of excitability, [Ca2+]i, and myogenic tone in arterial myocytes.
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- 2020
32. Co-occurring Alterations in the RAS–MAPK Pathway Limit Response to MET Inhibitor Treatment in MET Exon 14 Skipping Mutation-Positive Lung Cancer
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Rotow, Julia K, Gui, Philippe, Wu, Wei, Raymond, Victoria M, Lanman, Richard B, Kaye, Frederic J, Peled, Nir, de la Cruz, Ferran Fece, Nadres, Brandon, Corcoran, Ryan B, Yeh, Iwei, Bastian, Boris C, Starostik, Petr, Newsom, Kimberly, Olivas, Victor R, Wolff, Alexander M, Fraser, James S, Collisson, Eric A, McCoach, Caroline E, Camidge, D Ross, Pacheco, Jose, Bazhenova, Lyudmila, Li, Tianhong, Bivona, Trever G, and Blakely, Collin M
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Lung ,Lung Cancer ,Cancer ,Clinical Research ,Genetics ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Good Health and Well Being ,Aged ,Animals ,Biomarkers ,Tumor ,Carcinoma ,Non-Small-Cell Lung ,Cell-Free Nucleic Acids ,Crizotinib ,Exons ,Female ,Humans ,Lung Neoplasms ,MAP Kinase Signaling System ,Male ,Mice ,Mice ,Inbred BALB C ,Middle Aged ,Molecular Targeted Therapy ,Mutation ,Oncogene Protein p21(ras) ,Protein Kinase Inhibitors ,Proto-Oncogene Proteins c-met ,Treatment Outcome ,Tumor Cells ,Cultured ,Oncology & Carcinogenesis ,Clinical sciences ,Oncology and carcinogenesis - Abstract
PurposeAlthough patients with advanced-stage non-small cell lung cancers (NSCLC) harboring MET exon 14 skipping mutations (METex14) often benefit from MET tyrosine kinase inhibitor (TKI) treatment, clinical benefit is limited by primary and acquired drug resistance. The molecular basis for this resistance remains incompletely understood.Experimental designTargeted sequencing analysis was performed on cell-free circulating tumor DNA obtained from 289 patients with advanced-stage METex14-mutated NSCLC.ResultsProminent co-occurring RAS-MAPK pathway gene alterations (e.g., in KRAS, NF1) were detected in NSCLCs with METex14 skipping alterations as compared with EGFR-mutated NSCLCs. There was an association between decreased MET TKI treatment response and RAS-MAPK pathway co-occurring alterations. In a preclinical model expressing a canonical METex14 mutation, KRAS overexpression or NF1 downregulation hyperactivated MAPK signaling to promote MET TKI resistance. This resistance was overcome by cotreatment with crizotinib and the MEK inhibitor trametinib.ConclusionsOur study provides a genomic landscape of co-occurring alterations in advanced-stage METex14-mutated NSCLC and suggests a potential combination therapy strategy targeting MAPK pathway signaling to enhance clinical outcomes.
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- 2020
33. Immune Cells in the Placental Villi Contribute to Intra-amniotic Inflammation
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Toothaker, Jessica M, Presicce, Pietro, Cappelletti, Monica, Stras, Stephanie F, McCourt, Collin C, Chougnet, Claire A, Kallapur, Suhas G, and Konnikova, Liza
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Perinatal Period - Conditions Originating in Perinatal Period ,Conditions Affecting the Embryonic and Fetal Periods ,Pediatric ,Contraception/Reproduction ,Vaccine Related ,Aetiology ,2.1 Biological and endogenous factors ,Reproductive health and childbirth ,Good Health and Well Being ,Animals ,Biomarkers ,Chorioamnionitis ,Chorionic Villi ,Decidua ,Disease Models ,Animal ,Female ,Immunophenotyping ,Leukocytes ,Lipopolysaccharides ,Lymphocyte Activation ,Macaca mulatta ,Pregnancy ,Signal Transduction ,Tumor Necrosis Factor Inhibitors ,Tumor Necrosis Factor-alpha ,choriodecidua ,CyTOF ,immune ,intra-amniotic inflammation ,placental villi ,Immunology ,Medical Microbiology - Abstract
Intra-amniotic (IA) inflammation is associated with significant morbidities for both the mother and the fetus. Prior studies have illustrated many of the effects of IA inflammation on the uterine lining (decidua) and membranous layers of the placenta at the fetal-maternal interface. However, much less is known about the immunological response occurring within the villous placenta. Using a rhesus macaque model of lipopolysaccharide (LPS)-induced IA inflammation, we showed that pregnancy-matched choriodecidua and villi have distinct immunological profiles in rhesus pregnancies. In the choriodecidua, we show that the abundance of neutrophils, multiple populations of antigen-presenting cells, and two populations of natural killer (NK) cells changes with prenatal IA LPS exposure. In contrast, in immune cells within the villous placenta we observed alterations in the abundance of B cells, monocytes, and CD8 T cells. Prior work has illustrated that IA inflammation leads to an increase in tumor necrosis factor alpha (TNFα) at the fetal-maternal interface. In this study, pretreatment with a TNFα blockade partially reversed inflammation in the placental villi. Furthermore, we report that immune cells in the villous placenta sensed LPS during our experimental window, and subsequently activated T cells to produce proinflammatory cytokines. Moreover, this study is the first report of memory T cells in third-trimester non-human primate placental villi and provides evidence that manipulation of immune cells in the villi at the fetal-maternal interface should be considered as a potential therapeutic target for IA inflammation.
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- 2020
34. Pharmacokinetics, pharmacodynamics and safety studies on URB937, a peripherally restricted fatty acid amide hydrolase inhibitor, in rats
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Vozella, Valentina, Ahmed, Faizy, Choobchian, Paoula, Merrill, Collin B, Zibardi, Cristina, Tarzia, Giorgio, Mor, Marco, Duranti, Andrea, Tontini, Andrea, Rivara, Silvia, and Piomelli, Daniele
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Neurosciences ,Development of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Neurological ,Oral and gastrointestinal ,Administration ,Oral ,Amidohydrolases ,Animals ,Brain ,Cannabinoids ,Chromatography ,Liquid ,Dose-Response Relationship ,Drug ,Enzyme Inhibitors ,Female ,Male ,Rats ,Rats ,Sprague-Dawley ,Tandem Mass Spectrometry ,Tissue Distribution ,analgesia ,endocannabinoid ,fatty acid amide hydrolase ,oleoylethanolamide ,URB937 ,Pharmacology and Pharmaceutical Sciences ,Medical Physiology ,Pharmacology & Pharmacy - Abstract
ObjectivesURB937, a peripheral fatty acid amide hydrolase (FAAH) inhibitor, exerts profound analgesic effects in animal models. We examined, in rats, (1) the pharmacokinetic profile of oral URB937; (2) the compound's ability to elevate levels of the representative FAAH substrate, oleoylethanolamide (OEA); and (3) the compound's tolerability after oral administration.MethodsWe developed a liquid chromatography/tandem mass spectrometry (LC/MS-MS) method to measure URB937 and used a pre-existing LC/MS-MS assay to quantify OEA. FAAH activity was measured using a radioactive substrate. The tolerability of single or repeated (once daily for 2 weeks) oral administration of supramaximal doses of URB937 (100, 300, 1000 mg/kg) was assessed by monitoring food intake, water intake and body weight, followed by post-mortem evaluation of organ structure.Key findingsURB937 was orally available in male rats (F = 36%), but remained undetectable in brain when administered at doses that maximally inhibit FAAH activity and elevate OEA in plasma and liver. Acute and subchronic treatment with high doses of URB937 was well-tolerated and resulted in FAAH inhibition in brain.ConclusionsPain remains a major unmet medical need. The favourable pharmacokinetic and pharmacodynamic properties of URB937, along with its tolerability, encourage further development studies on this compound.
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- 2019
35. Mechanisms of virus dissemination in bone marrow of HIV-1-infected humanized BLT mice.
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Ladinsky, Mark S, Khamaikawin, Wannisa, Jung, Yujin, Lin, Samantha, Lam, Jennifer, An, Dong Sung, Bjorkman, Pamela J, and Kieffer, Collin
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Bone Marrow Cells ,Animals ,Mice ,SCID ,HIV-1 ,HIV Infections ,Microscopy ,Microscopy ,Fluorescence ,Viral Load ,Electron Microscope Tomography ,electron tomography ,human biology ,humanized mouse ,infectious disease ,light sheet microscopy ,medicine ,microbiology ,mouse ,tissue clearing ,Infectious Diseases ,HIV/AIDS ,Human Fetal Tissue ,Stem Cell Research ,2.2 Factors relating to the physical environment ,2.1 Biological and endogenous factors ,Infection ,Biochemistry and Cell Biology - Abstract
Immune progenitor cells differentiate in bone marrow (BM) and then migrate to tissues. HIV-1 infects multiple BM cell types, but virus dissemination within BM has been poorly understood. We used light microscopy and electron tomography to elucidate mechanisms of HIV-1 dissemination within BM of HIV-1-infected BM/liver/thymus (BLT) mice. Tissue clearing combined with confocal and light sheet fluorescence microscopy revealed distinct populations of HIV-1 p24-producing cells in BM early after infection, and quantification of these populations identified macrophages as the principal subset of virus-producing cells in BM over time. Electron tomography demonstrated three modes of HIV-1 dissemination in BM: (i) semi-synchronous budding from T-cell and macrophage membranes, (ii) mature virus association with virus-producing T-cell uropods contacting putative target cells, and (iii) macrophages engulfing HIV-1-producing T-cells and producing virus within enclosed intracellular compartments that fused to invaginations with access to the extracellular space. These results illustrate mechanisms by which the specialized environment of the BM can promote virus spread locally and to distant lymphoid tissues.
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- 2019
36. Effects of essential amino acid supplementation to promote honey bee gland and muscle development in cages and colonies
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Hendriksma, Harmen P, Pachow, Collin D, and Nieh, James C
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Zoology ,Biological Sciences ,Nutrition ,Amino Acids ,Animal Husbandry ,Animals ,Bees ,Dietary Supplements ,Muscle Development ,Complementation ,Deficiency ,Diet ,Hypopharyngeal glands ,Genetics ,Physiology ,Entomology ,Medical physiology - Abstract
There is growing concern about the impact of poor nutrition on honey bee health. With caged bee experiments and whole-colony field experiments, we examined the effects of supplementing bees with essential amino acids (EAA), or a control treatment of nonessential amino acids (NAA). Caged bees fed EAA developed significantly greater head weights than controls, weights that were similar to nurse bees. Caged bees fed EAA developed significantly greater thorax weights than controls, weights that were similar to foragers. Higher head and thorax weights may respectively reflect increased glandular development in nurse bees and higher flight muscle mass in forager bees. In our field study, 29% of the pollen collected by our honey bee colonies came from eucalyptus trees. Amino acid analyses revealed no EAA deficiencies for the bee-collected polyfloral pollen or for monofloral eucalyptus pollen. Colonies fed 29 g EAA supplement may have slightly increased individual bee growth and brood rearing, but this effect was not significant. A clear colony result was a correlation between nurse bee physiology and brood development: 17% increase in nurse bee weight corresponded to 100% more capped brood cells (R2 = 0.38). We suggest that colony supplementation should target nurse bee nutrition. Nurse bees eventually become forager bees. Hence, increased glandular development may support colony brood development and greater flight muscle mass may assist colony foraging.
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- 2019
37. Differential subcellular localization regulates oncogenic signaling by ROS1 kinase fusion proteins
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Neel, Dana S, Allegakoen, David V, Olivas, Victor, Mayekar, Manasi K, Hemmati, Golzar, Chatterjee, Nilanjana, Blakely, Collin M, McCoach, Caroline E, Rotow, Julia K, Le, Anh, Karachaliou, Niki, Rosell, Rafael, Riess, Jonathan W, Nichols, Robert, Doebele, Robert C, and Bivona, Trever G
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Biochemistry and Cell Biology ,Biological Sciences ,Cancer ,Adenocarcinoma of Lung ,Animals ,Antigens ,CD ,Endosomes ,HEK293 Cells ,Humans ,Lung Neoplasms ,MAP Kinase Signaling System ,Mice ,Mice ,Inbred NOD ,Mice ,SCID ,NIH 3T3 Cells ,Oncogene Proteins ,Fusion ,Protein-Tyrosine Kinases ,Proto-Oncogene Proteins ,Sialyltransferases ,Sodium-Phosphate Cotransporter Proteins ,Type IIb ,Subcellular Fractions ,Syndecan-4 ,ras Proteins ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis ,Biochemistry and cell biology ,Oncology and carcinogenesis - Abstract
Chromosomal rearrangements involving receptor tyrosine kinases (RTK) are a clinically relevant oncogenic mechanism in human cancers. These chimeric oncoproteins often contain the C-terminal kinase domain of the RTK joined in cis to various N-terminal, nonkinase fusion partners. The functional role of the N-terminal fusion partner in RTK fusion oncoproteins is poorly understood. Here, we show that distinct N-terminal fusion partners drive differential subcellular localization, which imparts distinct cell signaling and oncogenic properties of different, clinically relevant ROS1 RTK fusion oncoproteins. SDC4-ROS1 and SLC34A2-ROS1 fusion oncoproteins resided on endosomes and activated the MAPK pathway. CD74-ROS1 variants that localized instead to the endoplasmic reticulum (ER) showed compromised activation of MAPK. Forced relocalization of CD74-ROS1 from the ER to endosomes restored MAPK signaling. ROS1 fusion oncoproteins that better activate MAPK formed more aggressive tumors. Thus, differential subcellular localization controlled by the N-terminal fusion partner regulates the oncogenic mechanisms and output of certain RTK fusion oncoproteins. SIGNIFICANCE: ROS1 fusion oncoproteins exhibit differential activation of MAPK signaling according to subcellular localization, with ROS1 fusions localized to endosomes, the strongest activators of MAPK signaling.
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- 2019
38. Aurora kinase A drives the evolution of resistance to third-generation EGFR inhibitors in lung cancer
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Shah, Khyati N, Bhatt, Roma, Rotow, Julia, Rohrberg, Julia, Olivas, Victor, Wang, Victoria E, Hemmati, Golzar, Martins, Maria M, Maynard, Ashley, Kuhn, Jonathan, Galeas, Jacqueline, Donnella, Hayley J, Kaushik, Swati, Ku, Angel, Dumont, Sophie, Krings, Gregor, Haringsma, Henry J, Robillard, Liliane, Simmons, Andrew D, Harding, Thomas C, McCormick, Frank, Goga, Andrei, Blakely, Collin M, Bivona, Trever G, and Bandyopadhyay, Sourav
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Rare Diseases ,Lung ,Cancer ,Lung Cancer ,5.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Development of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Good Health and Well Being ,Animals ,Apoptosis ,Aurora Kinase A ,Cell Count ,Cell Cycle Proteins ,Cell Line ,Tumor ,Drug Resistance ,Neoplasm ,ErbB Receptors ,Humans ,Lung Neoplasms ,Mice ,Microtubule-Associated Proteins ,Mutation ,Neoplasm ,Residual ,Nuclear Proteins ,Phosphorylation ,Protein Kinase Inhibitors ,Medical and Health Sciences ,Immunology ,Biomedical and clinical sciences ,Health sciences - Abstract
Although targeted therapies often elicit profound initial patient responses, these effects are transient due to residual disease leading to acquired resistance. How tumors transition between drug responsiveness, tolerance and resistance, especially in the absence of preexisting subclones, remains unclear. In epidermal growth factor receptor (EGFR)-mutant lung adenocarcinoma cells, we demonstrate that residual disease and acquired resistance in response to EGFR inhibitors requires Aurora kinase A (AURKA) activity. Nongenetic resistance through the activation of AURKA by its coactivator TPX2 emerges in response to chronic EGFR inhibition where it mitigates drug-induced apoptosis. Aurora kinase inhibitors suppress this adaptive survival program, increasing the magnitude and duration of EGFR inhibitor response in preclinical models. Treatment-induced activation of AURKA is associated with resistance to EGFR inhibitors in vitro, in vivo and in most individuals with EGFR-mutant lung adenocarcinoma. These findings delineate a molecular path whereby drug resistance emerges from drug-tolerant cells and unveils a synthetic lethal strategy for enhancing responses to EGFR inhibitors by suppressing AURKA-driven residual disease and acquired resistance.
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- 2019
39. Schwann cell–derived periostin promotes autoimmune peripheral polyneuropathy via macrophage recruitment
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Allard, Denise E, Wang, Yan, Li, Jian Joel, Conley, Bridget, Xu, Erin W, Sailer, David, Kimpston, Caellaigh, Notini, Rebecca, Smith, Collin-Jamal, Koseoglu, Emel, Starmer, Joshua, Zeng, Xiaopei L, Howard, James F, Hoke, Ahmet, Scherer, Steven S, and Su, Maureen A
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Neurodegenerative ,Chronic Pain ,Autoimmune Disease ,Neurosciences ,Pain Research ,Peripheral Neuropathy ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Inflammatory and immune system ,Animals ,CD11b Antigen ,Cell Adhesion Molecules ,Humans ,Macrophages ,Mice ,Mice ,Inbred NOD ,Mice ,Knockout ,Mice ,SCID ,Polyradiculoneuropathy ,Chronic Inflammatory Demyelinating ,Schwann Cells ,Autoimmune diseases ,Autoimmunity ,Demyelinating disorders ,Extracellular matrix ,Neuroscience ,Medical and Health Sciences ,Immunology - Abstract
Chronic inflammatory demyelinating polyneuropathy (CIDP) and Guillain-Barre syndrome (GBS) are inflammatory neuropathies that affect humans and are characterized by peripheral nerve myelin destruction and macrophage-containing immune infiltrates. In contrast to the traditional view that the peripheral nerve is simply the target of autoimmunity, we report here that peripheral nerve Schwann cells exacerbate the autoimmune process through extracellular matrix (ECM) protein induction. In a spontaneous autoimmune peripheral polyneuropathy (SAPP) mouse model of inflammatory neuropathy and CIDP nerve biopsies, the ECM protein periostin (POSTN) was upregulated in affected sciatic nerves and was primarily expressed by Schwann cells. Postn deficiency delayed the onset and reduced the extent of neuropathy, as well as decreased the number of macrophages infiltrating the sciatic nerve. In an in vitro assay, POSTN promoted macrophage chemotaxis in an integrin-AM (ITGAM) and ITGAV-dependent manner. The PNS-infiltrating macrophages in SAPP-affected nerves were pathogenic, since depletion of macrophages protected against the development of neuropathy. Our findings show that Schwann cells promote macrophage infiltration by upregulating Postn and suggest that POSTN is a novel target for the treatment of macrophage-associated inflammatory neuropathies.
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- 2018
40. RAS nucleotide cycling underlies the SHP2 phosphatase dependence of mutant BRAF-, NF1- and RAS-driven cancers
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Nichols, Robert J, Haderk, Franziska, Stahlhut, Carlos, Schulze, Christopher J, Hemmati, Golzar, Wildes, David, Tzitzilonis, Christos, Mordec, Kasia, Marquez, Abby, Romero, Jason, Hsieh, Tientien, Zaman, Aubhishek, Olivas, Victor, McCoach, Caroline, Blakely, Collin M, Wang, Zhengping, Kiss, Gert, Koltun, Elena S, Gill, Adrian L, Singh, Mallika, Goldsmith, Mark A, Smith, Jacqueline AM, and Bivona, Trever G
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Biochemistry and Cell Biology ,Biological Sciences ,Rare Diseases ,Cancer ,Development of treatments and therapeutic interventions ,2.1 Biological and endogenous factors ,5.1 Pharmaceuticals ,Aetiology ,Animals ,Antineoplastic Agents ,Biomarkers ,Tumor ,Cell Line ,Tumor ,Enzyme Inhibitors ,Extracellular Signal-Regulated MAP Kinases ,Genetic Predisposition to Disease ,Guanosine Triphosphate ,HEK293 Cells ,Humans ,Mice ,Inbred BALB C ,Mice ,Nude ,Mitogen-Activated Protein Kinase Kinases ,Mutation ,Neoplasms ,Neurofibromin 1 ,Phenotype ,Protein Tyrosine Phosphatase ,Non-Receptor Type 11 ,Proto-Oncogene Proteins B-raf ,Proto-Oncogene Proteins p21(ras) ,SOS1 Protein ,Signal Transduction ,Tumor Burden ,Xenograft Model Antitumor Assays ,raf Kinases ,Medical and Health Sciences ,Developmental Biology ,Biochemistry and cell biology - Abstract
Oncogenic alterations in the RAS/RAF/MEK/ERK pathway drive the growth of a wide spectrum of cancers. While BRAF and MEK inhibitors are efficacious against BRAFV600E-driven cancers, effective targeted therapies are lacking for most cancers driven by other pathway alterations, including non-V600E oncogenic BRAF, RAS GTPase-activating protein (GAP) NF1 (neurofibromin 1) loss and oncogenic KRAS. Here, we show that targeting the SHP2 phosphatase (encoded by PTPN11) with RMC-4550, a small-molecule allosteric inhibitor, is effective in human cancer models bearing RAS-GTP-dependent oncogenic BRAF (for example, class 3 BRAF mutants), NF1 loss or nucleotide-cycling oncogenic RAS (for example, KRASG12C). SHP2 inhibitor treatment decreases oncogenic RAS/RAF/MEK/ERK signalling and cancer growth by disrupting SOS1-mediated RAS-GTP loading. Our findings illuminate a critical function for SHP2 in promoting oncogenic RAS/MAPK pathway activation in cancers with RAS-GTP-dependent oncogenic BRAF, NF1 loss and nucleotide-cycling oncogenic KRAS. SHP2 inhibition is a promising molecular therapeutic strategy for patients with cancers bearing these oncogenic drivers.
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- 2018
41. Short Telomeres Induce p53 and Autophagy and Modulate Age-Associated Changes in Cardiac Progenitor Cell Fate
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Matsumoto, Collin, Jiang, Yan, Emathinger, Jacqueline, Quijada, Pearl, Nguyen, Nathalie, De La Torre, Andrea, Moshref, Maryam, Nguyen, Jonathan, Levinson, Aimee B, Shin, Minyoung, Sussman, Mark A, and Hariharan, Nirmala
- Subjects
Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Biological Sciences ,Stem Cell Research - Nonembryonic - Non-Human ,Regenerative Medicine ,Aging ,Cardiovascular ,Stem Cell Research ,Aetiology ,2.1 Biological and endogenous factors ,Animals ,Autophagy ,Cell Differentiation ,Heart ,Humans ,Mice ,Stem Cells ,Telomere ,Telomere Shortening ,Tumor Suppressor Protein p53 ,Cardiac progenitor cells ,Telomeres ,p53 ,Technology ,Medical and Health Sciences ,Immunology ,Biological sciences ,Biomedical and clinical sciences - Abstract
Aging severely limits myocardial repair and regeneration. Delineating the impact of age-associated factors such as short telomeres is critical to enhance the regenerative potential of cardiac progenitor cells (CPCs). We hypothesized that short telomeres activate p53 and induce autophagy to elicit the age-associated change in CPC fate. We isolated CPCs and compared mouse strains with different telomere lengths for phenotypic characteristics of aging. Wild mouse strain Mus musculus castaneus (CAST) possessing short telomeres exhibits early cardiac aging with cardiac dysfunction, hypertrophy, fibrosis, and senescence, as compared with common lab strains FVB and C57 bearing longer telomeres. CAST CPCs with short telomeres demonstrate altered cell fate as characterized by cell cycle arrest, senescence, basal commitment, and loss of quiescence. Elongation of telomeres using a modified mRNA for telomerase restores youthful properties to CAST CPCs. Short telomeres induce autophagy in CPCs, a catabolic protein degradation process, as evidenced by reduced p62 and increased accumulation of autophagic puncta. Pharmacological inhibition of autophagosome formation reverses the cell fate to a more youthful phenotype. Mechanistically, cell fate changes induced by short telomeres are partially p53 dependent, as p53 inhibition rescues senescence and commitment observed in CAST CPCs, coincident with attenuation of autophagy. In conclusion, short telomeres activate p53 and autophagy to tip the equilibrium away from quiescence and proliferation toward differentiation and senescence, leading to exhaustion of CPCs. This study provides the mechanistic basis underlying age-associated cell fate changes that will enable identification of molecular strategies to prevent senescence of CPCs. Stem Cells 2018;36:868-880.
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- 2018
42. Shortwave infrared fluorescence imaging with the clinically approved near-infrared dye indocyanine green
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Carr, Jessica A, Franke, Daniel, Caram, Justin R, Perkinson, Collin F, Saif, Mari, Askoxylakis, Vasileios, Datta, Meenal, Fukumura, Dai, Jain, Rakesh K, Bawendi, Moungi G, and Bruns, Oliver T
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Medical Biotechnology ,Biomedical and Clinical Sciences ,Cancer ,Biomedical Imaging ,Animals ,Blood Vessels ,Cattle ,Contrast Media ,Fluorescent Dyes ,Indocyanine Green ,Infrared Rays ,Intravital Microscopy ,Lymphatic Vessels ,Mice ,Microscopy ,Fluorescence ,Trastuzumab ,shortwave infrared ,biomedical imaging ,fluorescence imaging ,near infrared ,indocyanine green - Abstract
Fluorescence imaging is a method of real-time molecular tracking in vivo that has enabled many clinical technologies. Imaging in the shortwave IR (SWIR; 1,000-2,000 nm) promises higher contrast, sensitivity, and penetration depths compared with conventional visible and near-IR (NIR) fluorescence imaging. However, adoption of SWIR imaging in clinical settings has been limited, partially due to the absence of US Food and Drug Administration (FDA)-approved fluorophores with peak emission in the SWIR. Here, we show that commercially available NIR dyes, including the FDA-approved contrast agent indocyanine green (ICG), exhibit optical properties suitable for in vivo SWIR fluorescence imaging. Even though their emission spectra peak in the NIR, these dyes outperform commercial SWIR fluorophores and can be imaged in the SWIR, even beyond 1,500 nm. We show real-time fluorescence imaging using ICG at clinically relevant doses, including intravital microscopy, noninvasive imaging in blood and lymph vessels, and imaging of hepatobiliary clearance, and show increased contrast compared with NIR fluorescence imaging. Furthermore, we show tumor-targeted SWIR imaging with IRDye 800CW-labeled trastuzumab, an NIR dye being tested in multiple clinical trials. Our findings suggest that high-contrast SWIR fluorescence imaging can be implemented alongside existing imaging modalities by switching the detection of conventional NIR fluorescence systems from silicon-based NIR cameras to emerging indium gallium arsenide-based SWIR cameras. Using ICG in particular opens the possibility of translating SWIR fluorescence imaging to human clinical applications. Indeed, our findings suggest that emerging SWIR-fluorescent in vivo contrast agents should be benchmarked against the SWIR emission of ICG in blood.
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- 2018
43. Imaging PD-L1 Expression with ImmunoPET
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Truillet, Charles, Oh, Hsueh Ling J, Yeo, Siok Ping, Lee, Chia-Yin, Huynh, Loc T, Wei, Junnian, Parker, Matthew FL, Blakely, Collin, Sevillano, Natalia, Wang, Yung-Hua, Shen, Yuqin S, Olivas, Victor, Jami, Khaled M, Moroz, Anna, Jego, Benoit, Jaumain, Emilie, Fong, Lawrence, Craik, Charles S, Chang, Albert J, Bivona, Trever G, Wang, Cheng-I, and Evans, Michael J
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Biochemistry and Cell Biology ,Medicinal and Biomolecular Chemistry ,Chemical Sciences ,Biological Sciences ,Biotechnology ,Immunotherapy ,Lung Cancer ,Bioengineering ,Lung ,Women's Health ,Biomedical Imaging ,Cancer ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Good Health and Well Being ,Animals ,B7-H1 Antigen ,Carcinoma ,Non-Small-Cell Lung ,Cell Line ,Tumor ,HEK293 Cells ,Humans ,Immunoconjugates ,Immunoglobulin G ,Lung Neoplasms ,Male ,Mice ,Mice ,Inbred C57BL ,Positron Emission Tomography Computed Tomography ,Radioisotopes ,Recombinant Proteins ,Zirconium ,Organic Chemistry ,Biochemistry and cell biology ,Medicinal and biomolecular chemistry - Abstract
High sensitivity imaging tools could provide a more holistic view of target antigen expression to improve the identification of patients who might benefit from cancer immunotherapy. We developed for immunoPET a novel recombinant human IgG1 (termed C4) that potently binds an extracellular epitope on human and mouse PD-L1 and radiolabeled the antibody with zirconium-89. Small animal PET/CT studies showed that 89Zr-C4 detected antigen levels on a patient derived xenograft (PDX) established from a non-small-cell lung cancer (NSCLC) patient before an 8-month response to anti-PD-1 and anti-CTLA4 therapy. Importantly, the concentration of antigen is beneath the detection limit of previously developed anti-PD-L1 radiotracers, including radiolabeled atezolizumab. We also show that 89Zr-C4 can specifically detect antigen in human NSCLC and prostate cancer models endogenously expressing a broad range of PD-L1. 89Zr-C4 detects mouse PD-L1 expression changes in immunocompetent mice, suggesting that endogenous PD-1/2 will not confound human imaging. Lastly, we found that 89Zr-C4 could detect acute changes in tumor expression of PD-L1 due to standard of care chemotherapies. In summary, we present evidence that low levels of PD-L1 in clinically relevant cancer models can be imaged with immunoPET using a novel recombinant human antibody.
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- 2018
44. The rod signaling pathway in marsupial retinae
- Author
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Lutz, Nicolas D, Lemes, Emina, Krubitzer, Leah, Collin, Shaun P, Haverkamp, Silke, and Peichl, Leo
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Eye Disease and Disorders of Vision ,Animals ,Marsupialia ,Night Vision ,Protein Kinase C ,Retinal Rod Photoreceptor Cells ,Synapses ,General Science & Technology - Abstract
The retinal rod pathway, featuring dedicated rod bipolar cells (RBCs) and AII amacrine cells, has been intensely studied in placental mammals. Here, we analyzed the rod pathway in a nocturnal marsupial, the South American opossum Monodelphis domestica to elucidate whether marsupials have a similar rod pathway. The retina was dominated by rods with densities of 338,000-413,000/mm². Immunohistochemistry for the RBC-specific marker protein kinase Cα (PKCα) and the AII cell marker calretinin revealed the presence of both cell types with their typical morphology. This is the first demonstration of RBCs in a marsupial and of the integration of RBCs and AII cells in the rod signaling pathway. Electron microscopy showed invaginating synaptic contacts of the PKCα-immunoreactive bipolar cells with rods; light microscopic co-immunolabeling for the synaptic ribbon marker CtBP2 confirmed dominant rod contacts. The RBC axon terminals were mostly located in the innermost stratum S5 of the inner plexiform layer (IPL), but had additional side branches and synaptic varicosities in strata S3 and S4, with S3-S5 belonging to the presumed functional ON sublayer of the IPL, as shown by immunolabeling for the ON bipolar cell marker Gγ13. Triple-immunolabeling for PKCα, calretinin and CtBP2 demonstrated RBC synapses onto AII cells. These features conform to the pattern seen in placental mammals, indicating a basically similar rod pathway in M. domestica. The density range of RBCs was 9,900-16,600/mm2, that of AII cells was 1,500-3,260/mm2. The numerical convergence (density ratio) of 146-156 rods to 4.7-6.0 RBCs to 1 AII cell is within the broad range found among placental mammals. For comparison, we collected data for the Australian nocturnal dunnart Sminthopsis crassicaudata, and found it to be similar to M. domestica, with rod-contacting PKCα-immunoreactive bipolar cells that had axon terminals also stratifying in IPL strata S3-S5.
- Published
- 2018
45. The Gut Microbiome in Neuromyelitis Optica.
- Author
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Zamvil, Scott S, Spencer, Collin M, Baranzini, Sergio E, and Cree, Bruce AC
- Subjects
T-Lymphocytes ,Animals ,Humans ,Clostridium perfringens ,Neuromyelitis Optica ,Aquaporin 4 ,Dysbiosis ,Gastrointestinal Microbiome ,AQP4 ,Microbiome ,Molecular mimicry ,Neuromyelitis optica ,T cells ,Tcells ,Multiple Sclerosis ,Neurosciences ,Neurodegenerative ,Clinical Research ,Autoimmune Disease ,Brain Disorders ,Eye Disease and Disorders of Vision ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Pharmacology and Pharmaceutical Sciences ,Public Health and Health Services ,Neurology & Neurosurgery - Abstract
Neuromyelitis optica (NMO) is a rare, disabling, sometimes fatal central nervous system inflammatory demyelinating disease that is associated with antibodies ("NMO IgG") that target the water channel protein aquaporin-4 (AQP4) expressed on astrocytes. There is considerable interest in identifying environmental triggers that may elicit production of NMO IgG by AQP4-reactive B cells. Although NMO is considered principally a humoral autoimmune disease, antibodies of NMO IgG are IgG1, a T-cell-dependent immunoglobulin subclass, indicating that AQP4-reactive T cells have a pivotal role in NMO pathogenesis. When AQP4-specific proliferative T cells were first identified in patients with NMO it was discovered that T cells recognizing the dominant AQP4 T-cell epitope exhibited a T helper 17 (Th17) phenotype and displayed cross-reactivity to a homologous peptide sequence within a protein of Clostridium perfringens, a commensal bacterium found in human gut flora. The initial analysis of gut microbiota in NMO demonstrated that, in comparison to healthy controls (HC) and patients with multiple sclerosis, the microbiome of NMO is distinct. Remarkably, C. perfringens was the second most significantly enriched taxon in NMO, and among bacteria identified at the species level, C. perfringens was the one most highly associated with NMO. Those discoveries, along with evidence that certain Clostridia in the gut can regulate the balance between regulatory T cells and Th17 cells, indicate that gut microbiota, and possibly C. perfringens itself, could participate in NMO pathogenesis. Collectively, the evidence linking microbiota to humoral and cellular immunity in NMO underscores the importance for further investigating this relationship.
- Published
- 2018
46. Induction of Paralysis and Visual System Injury in Mice by T Cells Specific for Neuromyelitis Optica Autoantigen Aquaporin-4.
- Author
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Sagan, Sharon A, Cruz-Herranz, Andrés, Spencer, Collin M, Ho, Peggy P, Steinman, Lawrence, Green, Ari J, Sobel, Raymond A, and Zamvil, Scott S
- Subjects
Optic Nerve ,T-Lymphocytes ,Animals ,Humans ,Mice ,Neuromyelitis Optica ,Paralysis ,Autoantigens ,Aquaporin 4 ,Immunology ,Issue 126 ,neuromyelitis optica ,aquaporin-4 ,flow cytometry ,T cell adoptive transfer ,CNS autoimmunity ,optical coherence tomography ,Neurodegenerative ,Brain Disorders ,Neurosciences ,Autoimmune Disease ,Eye Disease and Disorders of Vision ,Multiple Sclerosis ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Biochemistry and Cell Biology ,Psychology ,Cognitive Sciences - Abstract
While it is recognized that aquaporin-4 (AQP4)-specific T cells and antibodies participate in the pathogenesis of neuromyelitis optica (NMO), a human central nervous system (CNS) autoimmune demyelinating disease, creation of an AQP4-targeted model with both clinical and histologic manifestations of CNS autoimmunity has proven challenging. Immunization of wild-type (WT) mice with AQP4 peptides elicited T cell proliferation, although those T cells could not transfer disease to naïve recipient mice. Recently, two novel AQP4 T cell epitopes, peptide (p) 135-153 and p201-220, were identified when studying immune responses to AQP4 in AQP4-deficient (AQP4-/-) mice, suggesting T cell reactivity to these epitopes is normally controlled by thymic negative selection. AQP4-/- Th17 polarized T cells primed to either p135-153 or p201-220 induced paralysis in recipient WT mice, that was associated with predominantly leptomeningeal inflammation of the spinal cord and optic nerves. Inflammation surrounding optic nerves and involvement of the inner retinal layers (IRL) were manifested by changes in serial optical coherence tomography (OCT). Here, we illustrate the approaches used to create this new in vivo model of AQP4-targeted CNS autoimmunity (ATCA), which can now be employed to study mechanisms that permit development of pathogenic AQP4-specific T cells and how they may cooperate with B cells in NMO pathogenesis.
- Published
- 2017
47. Patch clamp-assisted single neuron lipidomics.
- Author
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Merrill, Collin B, Basit, Abdul, Armirotti, Andrea, Jia, Yousheng, Gall, Christine M, Lynch, Gary, and Piomelli, Daniele
- Subjects
Dentate Gyrus ,Neurons ,Animals ,Mice ,Lipids ,Chromatography ,Liquid ,Patch-Clamp Techniques ,Mass Spectrometry ,CA1 Region ,Hippocampal ,Single-Cell Analysis ,Chromatography ,Liquid ,CA1 Region ,Hippocampal ,Neurodegenerative ,Neurosciences ,Rare Diseases ,1.1 Normal biological development and functioning ,Neurological ,Biochemistry and Cell Biology ,Other Physical Sciences - Abstract
Our understanding of the physiological and pathological functions of brain lipids is limited by the inability to analyze these molecules at cellular resolution. Here, we present a method that enables the detection of lipids in identified single neurons from live mammalian brains. Neuronal cell bodies are captured from perfused mouse brain slices by patch clamping, and lipids are analyzed using an optimized nanoflow liquid chromatography/mass spectrometry protocol. In a first application of the method, we identified more than 40 lipid species from dentate gyrus granule cells and CA1 pyramidal neurons of the hippocampus. This survey revealed substantial lipid profile differences between neurons and whole brain tissue, as well as between resting and physiologically stimulated neurons. The results suggest that patch clamp-assisted single neuron lipidomics could be broadly applied to investigate neuronal lipid homeostasis in healthy and diseased brains.
- Published
- 2017
48. Longitudinal imaging of HIV-1 spread in humanized mice with parallel 3D immunofluorescence and electron tomography.
- Author
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Kieffer, Collin, Ladinsky, Mark S, Ninh, Allen, Galimidi, Rachel P, and Bjorkman, Pamela J
- Subjects
Body Fluids ,Animal Structures ,Animals ,Mice ,SCID ,HIV-1 ,HIV Infections ,Imaging ,Three-Dimensional ,Fluorescent Antibody Technique ,Longitudinal Studies ,Time Factors ,Electron Microscope Tomography ,3D immunofluorescence ,CLARITY ,electron tomography ,humanized mouse ,infectious disease ,microbiology ,mouse ,tissue clearing ,Infectious Diseases ,HIV/AIDS ,Digestive Diseases ,2.1 Biological and endogenous factors ,2.2 Factors relating to the physical environment ,Infection ,Biochemistry and Cell Biology - Abstract
Dissemination of HIV-1 throughout lymphoid tissues leads to systemic virus spread following infection. We combined tissue clearing, 3D-immunofluorescence, and electron tomography (ET) to longitudinally assess early HIV-1 spread in lymphoid tissues in humanized mice. Immunofluorescence revealed peak infection density in gut at 10-12 days post-infection when blood viral loads were low. Human CD4+ T-cells and HIV-1-infected cells localized predominantly to crypts and the lower third of intestinal villi. Free virions and infected cells were not readily detectable by ET at 5-days post-infection, whereas HIV-1-infected cells surrounded by pools of free virions were present in ~10% of intestinal crypts by 10-12 days. ET of spleen revealed thousands of virions released by individual cells and discreet cytoplasmic densities near sites of prolific virus production. These studies highlight the importance of multiscale imaging of HIV-1-infected tissues and are adaptable to other animal models and human patient samples.
- Published
- 2017
49. Inactivation of Capicua drives cancer metastasis
- Author
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Okimoto, Ross A, Breitenbuecher, Frank, Olivas, Victor R, Wu, Wei, Gini, Beatrice, Hofree, Matan, Asthana, Saurabh, Hrustanovic, Gorjan, Flanagan, Jennifer, Tulpule, Asmin, Blakely, Collin M, Haringsma, Henry J, Simmons, Andrew D, Gowen, Kyle, Suh, James, Miller, Vincent A, Ali, Siraj, Schuler, Martin, and Bivona, Trever G
- Subjects
Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Agricultural Biotechnology ,Lung ,Lung Cancer ,Cancer ,Aetiology ,2.1 Biological and endogenous factors ,Adenovirus E1A Proteins ,Animals ,Carcinoma ,Non-Small-Cell Lung ,Female ,Gene Expression Profiling ,Humans ,Lung Neoplasms ,Matrix Metalloproteinases ,Membrane-Associated ,Mice ,Mice ,SCID ,Proto-Oncogene Proteins ,Proto-Oncogene Proteins c-ets ,Repressor Proteins ,Tumor Cells ,Cultured ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
Metastasis is the leading cause of death in people with lung cancer, yet the molecular effectors underlying tumor dissemination remain poorly defined. Through the development of an in vivo spontaneous lung cancer metastasis model, we show that the developmentally regulated transcriptional repressor Capicua (CIC) suppresses invasion and metastasis. Inactivation of CIC relieves repression of its effector ETV4, driving ETV4-mediated upregulation of MMP24, which is necessary and sufficient for metastasis. Loss of CIC, or an increase in levels of its effectors ETV4 and MMP24, is a biomarker of tumor progression and worse outcomes in people with lung and/or gastric cancer. Our findings reveal CIC as a conserved metastasis suppressor, highlighting new anti-metastatic strategies that could potentially improve patient outcomes.
- Published
- 2017
50. Tolerance checkpoint bypass permits emergence of pathogenic T cells to neuromyelitis optica autoantigen aquaporin-4
- Author
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Sagan, Sharon A, Winger, Ryan C, Cruz-Herranz, Andrés, Nelson, Patricia A, Hagberg, Sarah, Miller, Corey N, Spencer, Collin M, Ho, Peggy P, Bennett, Jeffrey L, Levy, Michael, Levin, Marc H, Verkman, Alan S, Steinman, Lawrence, Green, Ari J, Anderson, Mark S, Sobel, Raymond A, and Zamvil, Scott S
- Subjects
Biomedical and Clinical Sciences ,Immunology ,Autoimmune Disease ,Eye Disease and Disorders of Vision ,Neurodegenerative ,Multiple Sclerosis ,Brain Disorders ,Neurosciences ,2.1 Biological and endogenous factors ,Aetiology ,Good Health and Well Being ,Animals ,Aquaporin 4 ,Autoantibodies ,Autoantigens ,Autoimmune Diseases ,Cell Proliferation ,Central Nervous System ,Epitope Mapping ,Epitopes ,T-Lymphocyte ,Female ,Flow Cytometry ,Immune Tolerance ,Immunoglobulin G ,Inflammation ,Leukocytes ,Mice ,Mice ,Inbred C57BL ,Mice ,Transgenic ,Neuromyelitis Optica ,Spleen ,T-Lymphocytes ,Th17 Cells ,neuromyelitis optica ,aquaporin-4 ,T-cell receptor ,tolerance ,ENMO - Abstract
Aquaporin-4 (AQP4)-specific T cells are expanded in neuromyelitis optica (NMO) patients and exhibit Th17 polarization. However, their pathogenic role in CNS autoimmune inflammatory disease is unclear. Although multiple AQP4 T-cell epitopes have been identified in WT C57BL/6 mice, we observed that neither immunization with those determinants nor transfer of donor T cells targeting them caused CNS autoimmune disease in recipient mice. In contrast, robust proliferation was observed following immunization of AQP4-deficient (AQP4-/-) mice with AQP4 peptide (p) 135-153 or p201-220, peptides predicted to contain I-Ab-restricted T-cell epitopes but not identified in WT mice. In comparison with WT mice, AQP4-/- mice used unique T-cell receptor repertoires for recognition of these two AQP4 epitopes. Donor T cells specific for either determinant from AQP4-/-, but not WT, mice induced paralysis in recipient WT and B-cell-deficient mice. AQP4-specific Th17-polarized cells induced more severe disease than Th1-polarized cells. Clinical signs were associated with opticospinal infiltrates of T cells and monocytes. Fluorescent-labeled donor T cells were detected in CNS lesions. Visual system involvement was evident by changes in optical coherence tomography. Fine mapping of AQP4 p201-220 and p135-153 epitopes identified peptides within p201-220 but not p135-153, which induced clinical disease in 40% of WT mice by direct immunization. Our results provide a foundation to evaluate how AQP4-specific T cells contribute to AQP4-targeted CNS autoimmunity (ATCA) and suggest that pathogenic AQP4-specific T-cell responses are normally restrained by central tolerance, which may be relevant to understanding development of AQP4-reactive T cells in NMO.
- Published
- 2016
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