1. Genome-wide analysis of long noncoding RNA and mRNA profiles in PRRSV-infected porcine alveolar macrophages
- Author
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Qiao Mu, Shuqi Mei, Wu Junjing, Xianwen Peng, Zhao Haizhong, Li Mingbo, and Guisheng Liu
- Subjects
0106 biological sciences ,Swine ,animal diseases ,Genome wide analysis ,Porcine Reproductive and Respiratory Syndrome ,RNA-Seq ,Biology ,01 natural sciences ,Virus ,03 medical and health sciences ,Interferon-gamma ,Macrophages, Alveolar ,Genetics ,Animals ,Porcine respiratory and reproductive syndrome virus ,RNA, Messenger ,Gene ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,Messenger RNA ,Innate immune system ,Toll-Like Receptors ,NF-kappa B ,virus diseases ,respiratory system ,Virology ,Long non-coding RNA ,RNA, Long Noncoding ,Transcriptome ,Function (biology) ,010606 plant biology & botany - Abstract
Porcine reproductive and respiratory syndrome (PRRS), which is caused by PRRS virus (PRRSV), is one of the most globally devastating swine diseases. It is essential to develop new strategy to control PRRS via an understanding of mechanisms that PRRSV utilizes to interfere with the host's innate immunity. In this study, we deeply sequenced and analyzed long noncoding RNA (lncRNA) and mRNA expression profiles of the porcine alveolar macrophages (PAMs) after PRRSV infection. 126 lncRNAs and 753 mRNAs were differentially expressed between PRRSV-infected and control PAMs. The co-expressed genes of down-regulated lncRNAs were significantly enriched within NF-kappa B and toll-like receptor signaling pathways. Co-expression network analysis indicated that part of the dysregulated lncRNAs associated with the interferon-induced genes. These dysregulated lncRNAs may play an important role in the host's innate immune responses to PRRSV infection. However, further research is required to characterize the function of these lncRNAs.
- Published
- 2019