1. Identification and validation of reference genes for real-time RT-PCR in Aphelenchoides besseyi
- Author
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Zi-Xu Zhang, Hui Xie, Dong-Wei Wang, Chun-Ling Xu, Mei Lv, and Jun-Yi Li
- Subjects
0106 biological sciences ,0301 basic medicine ,Nematoda ,Expression ,Biology ,Real-Time Polymerase Chain Reaction ,01 natural sciences ,18S ribosomal RNA ,Transcriptome ,03 medical and health sciences ,Aphelenchoides besseyi ,Tubulin ,Reference genes ,Genetics ,RNA, Ribosomal, 18S ,Reference gene ,Animals ,Molecular Biology ,Gene ,Gene Expression Profiling ,RT-qPCR ,General Medicine ,Reference Standards ,biology.organism_classification ,Life stage ,18S rRNA ,030104 developmental biology ,Real-time polymerase chain reaction ,Ubiquitin-Conjugating Enzymes ,Original Article ,Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating) ,010606 plant biology & botany - Abstract
Fragments of four candidate reference genes of Aphelenchoides besseyi, including actin, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), ubiquitin conjugating-3 enzyme (UBC) and alpha-tubulin (α-tubulin) were cloned from the transcriptome database of A. besseyi. The expression level of these four candidate reference genes and a commonly used reference gene of A. besseyi (18S rRNA) in three experimental conditions, including the four life stages (female, male, juvenile and egg) of two populations and the mixed-stage nematodes of four populations with different origins and hosts were analyzed by RT-qPCR. The expression stability of the five candidate reference genes under the three experimental conditions was analyzed by ΔCt, geNorm, NormFinder and RefFinder respectively. The analysis results of ΔCt, geNorm, NormFinder and RefFinder all indicated that UBC was the gene with the highest average ranking of stability. In conclusion, the expression stability of UBC was optimal under the three experimental conditions, indicating that UBC could be used as a suitable reference gene instead of 18S rRNA in the RT-qPCR analysis for A. besseyi.
- Published
- 2020