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We test the relationship between canopy photosynthesis and reflected near‐infrared radiation from vegetation across a range of functional (photosynthetic pathway and capacity) and structural conditions (leaf area index, fraction of green and dead leaves, canopy height, reproductive stage, and leaf angle inclination), weather conditions, and years using a network of field sites from across central California. We based our analysis on direct measurements of canopy photosynthesis, with eddy covariance, and measurements of reflected near‐infrared and red radiation from vegetation, with light‐emitting diode sensors. And we interpreted the observed relationships between photosynthesis and reflected near‐infrared radiation using simulations based on the multilayer, biophysical model, CanVeg. Measurements of reflected near‐infrared radiation were highly correlated with measurements of canopy photosynthesis on half‐hourly, daily, seasonal, annual, and decadal time scales across the wide range of function and structure and weather conditions. Slopes of the regression between canopy photosynthesis and reflected near‐infrared radiation were greatest for the fertilized and irrigated C4 corn crop, intermediate for the C3 tules on nutrient‐rich organic soil and nitrogen fixing alfalfa, and least for the native annual grasslands and oak savanna on nutrient‐poor, mineral soils. Reflected near‐infrared radiation from vegetation has several advantages over other remotely sensed vegetation indices that are used to infer canopy photosynthesis; it does not saturate at high leaf area indices, it is insensitive to the presence of dead legacy vegetation, the sensors are inexpensive, and the reflectance signal is strong. Hence, information on reflected near‐infrared radiation from vegetation may have utility in monitoring carbon assimilation in carbon sequestration projects or on microsatellites orbiting Earth for precision agriculture applications. Key Points: Reflected near‐infrared radiation is a strong proxy for canopy photosynthesisThis proxy works for a wide range of ecosystem structure and functionThe method has promise to be used for a variety of applications relating to carbon and water use [ABSTRACT FROM AUTHOR]

Many ecophysiological and biogeochemical processes respond rapidly to changes in biotic and abiotic conditions, while ecosystem-level responses develop much more slowly (e.g., over months, seasons, years, or decades). To better understand the role of the slow responses in regulating interannual variability in NEE, we partitioned NEE into two major ecological terms—gross primary productivity (GPP) and ecosystem respiration (Reco). We tested a set of hypotheses on seasonal scales using the flux and environment data collected from 2000 to 2015 in an oak-grass savanna area in California where ecosystems experience a wet winter and spring and a five-month-long summer drought each year. In our results, the spring season (Apr.–Jun.) contributed more than 50% of annual GPP and Reco. An analysis of outliers showed that each season could introduce significant anomalies in annual carbon budgets. The magnitude of the contribution depends on biotic and abiotic seasonal circumstances across the year and the particular sequences. We found that: (1) extremely wet springs reduced GPP in the years of 2006, 2011 and 2012; (2) soil moisture left from those extremely wet springs enhanced summer GPP; (3) groundwater recharged during the spring of 2011 was associated with the snowpack depth accumulated during the winter between 2010 and 2011; (4) dry autumns (Oct.–Dec.) and winters (Jan.–Mar.) decreased Reco significantly; (5) grass litter produced in previous seasons might increase Reco, and the effect of litter legacy on Reco was more observable in the second year of two consecutive wet springs. These findings confirm that biotic and abiotic extremes and legacies can introduce variations to annual ecosystem carbon balance, other than those that might be explained by the fast responses. [ABSTRACT FROM AUTHOR]

The quantification of carbon fluxes between the terrestrial biosphere and the atmosphere is of scientific importance and also relevant to climate-policy making. Eddy covariance flux towers provide continuous measurements of ecosystem-level exchange of carbon dioxide spanning diurnal, synoptic, seasonal, and interannual time scales. However, these measurements only represent the fluxes at the scale of the tower footprint. Here we used remotely sensed data from the Moderate Resolution Imaging Spectroradiometer (MODIS) to upscale gross primary productivity (GPP) data from eddy covariance flux towers to the continental scale. We first combined GPP and MODIS data for 42 AmeriFlux towers encompassing a wide range of ecosystem and climate types to develop a predictive GPP model using a regression tree approach. The predictive model was trained using observed GPP over the period 2000–2004, and was validated using observed GPP over the period 2005–2006 and leave-one-out cross-validation. Our model predicted GPP fairly well at the site level. We then used the model to estimate GPP for each 1 km × 1 km cell across the U.S. for each 8-day interval over the period from February 2000 to December 2006 using MODIS data. Our GPP estimates provide a spatially and temporally continuous measure of gross primary production for the U.S. that is a highly constrained by eddy covariance flux data. Our study demonstrated that our empirical approach is effective for upscaling eddy flux GPP data to the continental scale and producing continuous GPP estimates across multiple biomes. With these estimates, we then examined the patterns, magnitude, and interannual variability of GPP. We estimated a gross carbon uptake between 6.91 and 7.33 Pg C yr− 1 for the conterminous U.S. Drought, fires, and hurricanes reduced annual GPP at regional scales and could have a significant impact on the U.S. net ecosystem carbon exchange. The sources of the interannual variability of U.S. GPP were dominated by these extreme climate events and disturbances., Engineering and Applied Sciences

Eddy covariance flux towers provide continuous measurements of net ecosystem carbon exchange (NEE) for a wide range of climate and biome types. However, these measurements only represent the carbon fluxes at the scale of the tower footprint. To quantify the net exchange of carbon dioxide between the terrestrial biosphere and the atmosphere for regions or continents, flux tower measurements need to be extrapolated to these large areas. Here we used remotely sensed data from the Moderate Resolution Imaging Spectrometer (MODIS) instrument on board the National Aeronautics and Space Administration's (NASA) Terra satellite to scale up AmeriFlux NEE measurements to the continental scale. We first combined MODIS and AmeriFlux data for representative U.S. ecosystems to develop a predictive NEE model using a modified regression tree approach. The predictive model was trained and validated using eddy flux NEE data over the periods 2000–2004 and 2005–2006, respectively. We found that the model predicted NEE well (r = 0.73, p < 0.001). We then applied the model to the continental scale and estimated NEE for each 1 km × 1 km cell across the conterminous U.S. for each 8-day interval in 2005 using spatially explicit MODIS data. The model generally captured the expected spatial and seasonal patterns of NEE as determined from measurements and the literature. Our study demonstrated that our empirical approach is effective for scaling up eddy flux NEE measurements to the continental scale and producing wall-to-wall NEE estimates across multiple biomes. Our estimates may provide an independent dataset from simulations with biogeochemical models and inverse modeling approaches for examining the spatiotemporal patterns of NEE and constraining terrestrial carbon budgets over large areas., Organismic and Evolutionary Biology, Earth and Planetary Sciences, Engineering and Applied Sciences

Abstract: Eddy covariance flux towers provide continuous measurements of net ecosystem carbon exchange (NEE) for a wide range of climate and biome types. However, these measurements only represent the carbon fluxes at the scale of the tower footprint. To quantify the net exchange of carbon dioxide between the terrestrial biosphere and the atmosphere for regions or continents, flux tower measurements need to be extrapolated to these large areas. Here we used remotely sensed data from the Moderate Resolution Imaging Spectrometer (MODIS) instrument on board the National Aeronautics and Space Administration''s (NASA) Terra satellite to scale up AmeriFlux NEE measurements to the continental scale. We first combined MODIS and AmeriFlux data for representative U.S. ecosystems to develop a predictive NEE model using a modified regression tree approach. The predictive model was trained and validated using eddy flux NEE data over the periods 2000–2004 and 2005–2006, respectively. We found that the model predicted NEE well (r =0.73, p <0.001). We then applied the model to the continental scale and estimated NEE for each 1km×1km cell across the conterminous U.S. for each 8-day interval in 2005 using spatially explicit MODIS data. The model generally captured the expected spatial and seasonal patterns of NEE as determined from measurements and the literature. Our study demonstrated that our empirical approach is effective for scaling up eddy flux NEE measurements to the continental scale and producing wall-to-wall NEE estimates across multiple biomes. Our estimates may provide an independent dataset from simulations with biogeochemical models and inverse modeling approaches for examining the spatiotemporal patterns of NEE and constraining terrestrial carbon budgets over large areas. [Copyright &y& Elsevier]