10 results on '"Chen, Ci"'
Search Results
2. A method to specifically activate the Klotho promoter by using zinc finger proteins constructed from modular building blocks and from naturally engineered Egr1 transcription factor backbone.
- Author
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Chen, Ci‐Di, Rudy, Melissa A., Zeldich, Ella, and Abraham, Carmela R.
- Abstract
There is an unmet need for treatments for diseases associated with aging. The antiaging, life‐extending, and cognition‐enhancing protein Klotho is neuroprotective due to its anti‐inflammatory, antioxidative, and pro‐myelinating effects. In addition, Klotho is also a tumor suppressor and has beneficial roles in multiple organs. Klotho is downregulated as part of the aging process. Thus, upregulating Klotho in the brain may lead to novel therapeutics to people suffering or at risk for neurodegenerative diseases such as Alzheimer's, Parkinson's, and amyotrophic lateral sclerosis, and demyelinating diseases such as multiple sclerosis. We attempted to upregulate Klotho for its beneficial effects in the brain and elsewhere. Here, we describe a method to specifically activate Klotho gene expression. To accomplish this task, we designed zinc finger proteins (ZFPs) targeting within −300 bps of the human Klotho promoter. We designed the ZPF constructs either de novo from modular building blocks, or modified sequences from the natural endogenous Egr1 transcription factor backbone structure. Egr1 is known to upregulate Klotho expression. We tested the transcriptional activation effects of these ZFPs in a dual luciferase coincidence reporter system under the control of 4‐kb promoter of human Klotho in stable HEK293 cells and in HK‐2 cells that express Klotho protein endogenously. We found that the best ZFPs are the de novo designed ones targeting −250 bps of Klotho promoter and one of the Egr1‐binding sites. We further enhanced Klotho's activation using p65‐Rta transcriptional activation domains in addition to VP64. These upregulation approaches could be useful for studying Klotho's protective effects and designing Klotho boosting therapeutics for future in vivo experiments. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
3. Small Molecule Amyloid-β Protein Precursor Processing Modulators Lower Amyloid-β Peptide Levels via cKit Signaling.
- Author
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Chen, Ci-Di, Zeldich, Ella, Khodr, Christina, Camara, Kaddy, Tung, Tze Yu, Lauder, Emma C., Mullen, Patrick, Polanco, Taryn J., Liu, Yen-Yu, Zeldich, Dean, Xia, Weiming, Van Nostrand, William E., Brown, Lauren E., Porco, John A., Abraham, Carmela R., and Bush, Ashley
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TAU proteins , *AMYLOID , *PROTEIN precursors , *SMALL molecules , *ALZHEIMER'S disease , *MICROTUBULE-associated proteins , *PROTEIN-tyrosine kinases - Abstract
Alzheimer's disease (AD) is characterized by the accumulation of neurotoxic amyloid-β (Aβ) peptides consisting of 39-43 amino acids, proteolytically derived fragments of the amyloid-β protein precursor (AβPP), and the accumulation of the hyperphosphorylated microtubule-associated protein tau. Inhibiting Aβ production may reduce neurodegeneration and cognitive dysfunction associated with AD. We have previously used an AβPP-firefly luciferase enzyme complementation assay to conduct a high throughput screen of a compound library for inhibitors of AβPP dimerization, and identified a compound that reduces Aβ levels. In the present study, we have identified an analog, compound Y10, which also reduced Aβ. Initial kinase profiling assays identified the receptor tyrosine kinase cKit as a putative Y10 target. To elucidate the precise mechanism involved, AβPP phosphorylation was examined by IP-western blotting. We found that Y10 inhibits cKit phosphorylation and increases AβPP phosphorylation mainly on tyrosine residue Y743, according to AβPP751 numbering. A known cKit inhibitor and siRNA specific to cKit were also found to increase AβPP phosphorylation and lower Aβ levels. We also investigated a cKit downstream signaling molecule, the Shp2 phosphatase, and found that known Shp2 inhibitors and siRNA specific to Shp2 also increase AβPP phosphorylation, suggesting that the cKit signaling pathway is also involved in AβPP phosphorylation and Aβ production. We further found that inhibitors of both cKit and Shp2 enhance AβPP surface localization. Thus, regulation of AβPP phosphorylation by small molecules should be considered as a novel therapeutic intervention for AD. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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4. Detection of Amyloid-β Protein Precursor Homo-Interactions Using Beta-Galactosidase Enzyme Fragment Complementation.
- Author
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So, Pauline P.L., Chen, Ci-Di, and Abraham, Carmela R.
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AMYLOID beta-protein precursor , *BETA-galactosidase , *DIMERIZATION , *PROTEIN-protein interactions , *DISEASES in older people , *ALZHEIMER'S disease - Abstract
Amyloidogenic processing of the amyloid-β protein precursor (AβPP) produces amyloid-β peptides (Aβ), the major constituent of amyloid plaques in the brains of Alzheimer's disease (AD) patients. Experimental evidence suggests that increased dimerization of AβPP increases Aβ while decreased dimerization of AβPP decreases Aβ production. If true, developing tools for detecting AβPP-AβPP interactions to understand AβPP processing leading to Aβ production would be important. Here, we developed the method of β-galactosidase (β-gal) enzyme fragment complementation as a means to detect AβPP-AβPP interactions. Inactive β-gal fragments are independently tagged to the C-terminal ends of monomeric AβPPs, and will come together to form a functional enzyme upon AβPP-AβPP interactions. Successful detection of β-gal activity has been used to qualitatively visualize and quantify the amount of AβPP dimers or higher oligomers. This method can be used to enhance our understanding of the biological processes dependent upon AβPP-AβPP interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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5. A Novel Role of Nogo Proteins: Regulating Macrophages in Inflammatory Disease.
- Author
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Zhang, Ni, Cui, Yuanyuan, Li, Yuan, and Mi, Yajing
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NOGO protein ,MACROPHAGES ,ALZHEIMER'S disease ,MYELIN proteins ,CENTRAL nervous system ,THERAPEUTICS - Abstract
Nogo proteins, also known as Reticulon-4, have been identified as myelin-derived inhibitors of neurite outgrowth in the central nervous system (CNS). There are three Nogo variants, Nogo-A, Nogo-B and Nogo-C. Recent studies have shown that Nogo-A/B is abundant in macrophages and may have a wider effect on inflammation. In this review, we focus mainly on the possible roles of Nogo-A/B on polarization and recruitment of macrophages and their involvement in a variety of inflammatory diseases. We then discuss the Nogo receptor1 (NgR1), a common receptor for Nogo proteins that is also abundant in microglia/macrophage in the CNS. Interaction of Nogo and NgR1 in microglia/macrophage may affect the adhesion and polarization of macrophages that are involved in multiple neurodegenerative diseases, including Alzheimer's disease and multiple sclerosis. Overall, this review provides insights into the roles of Nogo proteins in regulating macrophage functions and suggests that, potentially, Nogo proteins maybe a new target in the treatment of inflammatory diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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6. Protein clearance strategies for disease intervention.
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Hommen, Franziska, Bilican, Saygın, and Vilchez, David
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CELL physiology ,HUNTINGTON disease ,CELL survival ,AMYOTROPHIC lateral sclerosis ,PROTEINS - Abstract
Protein homeostasis, or proteostasis, is essential for cell function and viability. Unwanted, damaged, misfolded and aggregated proteins are degraded by the ubiquitin–proteasome system (UPS) and the autophagy-lysosome pathway. Growing evidence indicates that alterations in these major proteolytic mechanisms lead to a demise in proteostasis, contributing to the onset and development of distinct diseases. Indeed, dysregulation of the UPS or autophagy is linked to several neurodegenerative, infectious and inflammatory disorders as well as cancer. Thus, modulation of protein clearance pathways is a promising approach for therapeutics. In this review, we discuss recent findings and open questions on how targeting proteolytic mechanisms could be applied for disease intervention. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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7. Early detection of Alzheimer's disease using local binary pattern and convolutional neural network.
- Author
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Francis, Ambily and Pandian, Immanuel Alex
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CONVOLUTIONAL neural networks ,ALZHEIMER'S disease ,MILD cognitive impairment ,MEDICAL specialties & specialists ,BRAIN abnormalities - Abstract
Alzheimer's disease, a progressive and irreversible abnormality of the human brain impairs memory and thinking skills. Gradually, it will damage the ability to carry out simple tasks. Even though the disease cannot be completely cured by medical specialists, the rate of brain damage can be pared if the disease is identified in its budding stage itself. Thus, victims and their relatives will get ample time to prepare themselves. Alzheimer's disease (AD), cognitively normal (CN), mild cognitive impairment convertible (MCIc), and mild cognitive impairment non-convertible (MCInc) are the different phases of cognition. The state of memory loss in aged people, which will not lead to AD, can be encountered as MCInc. The state-MCIc gradually leads to AD. The work is intended for the early detection of AD. Early detection can be claimed if and only if the state-MCIc is detected. But the clinical visual identification of state-MCIc from MRI scan is difficult. In this work, a novel local feature descriptor is proposed for the detection of state-MCIc. The proposed local feature descriptor combined strengths of fast Hessian detector and local binary pattern texture operator for the identification of key points and descriptions. A simple convolutional neural network is used for classification. The classification accuracy between MCIc and CN is obtained as 88.46% which is a pivotal result for early detection of AD. The classification accuracy between AD and CN is attained at 88.99%. The results indicate that the proposed system can contribute a colossal innovation in the early detection of AD. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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8. Exploration of multi‐target effects of 3‐benzoyl‐5‐hydroxychromen‐2‐one in Alzheimer's disease cell and mouse models.
- Author
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Lin, Te‐Hsien, Chiu, Ya‐Jen, Lin, Chih‐Hsin, Lin, Chung‐Yin, Chao, Chih‐Ying, Chen, Yu‐Chieh, Yang, Shu‐Mei, Lin, Wenwei, Mei Hsieh‐Li, Hsiu, Wu, Yih‐Ru, Chang, Kuo‐Hsuan, Lee‐Chen, Guey‐Jen, and Chen, Chiung‐Mei
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NEUROFIBRILLARY tangles ,ALZHEIMER'S disease ,REACTIVE oxygen species ,MOUSE diseases ,DRUG development ,CENTRAL nervous system - Abstract
Microtubule‐associated protein Tau, abundant in the central nervous system (CNS), plays crucial roles in microtubule assembly and stabilization. Abnormal Tau phosphorylation and aggregation are a common pathogenic hallmark in Alzheimer's disease (AD). Hyperphosphorylation of Tau could change its conformation and result in self‐aggregation, increased oxidative stress, and neuronal death. In this study, we examined the potential of licochalcone A (a natural chalcone) and five synthetic derivatives (LM compounds) for inhibiting Tau misfolding, scavenging reactive oxygen species (ROS) and providing neuroprotection in human cells expressing proaggregant ΔK280 TauRD‐DsRed. All test compounds were soluble up to 100 μM in cell culture media and predicted to be orally bioavailable and CNS‐active. Among them, licochalcone A and LM‐031 markedly reduced Tau misfolding and associated ROS, promoted neurite outgrowth, and inhibited caspase 3 activity in ΔK280 TauRD‐DsRed 293 and SH‐SY5Y cells. Mechanistic studies showed that LM‐031 upregulates HSPB1 chaperone, NRF2/NQO1/GCLC pathway, and CREB‐dependent BDNF/AKT/ERK/BCL2 pathway in ΔK280 TauRD‐DsRed SH‐SY5Y cells. Decreased neurite outgrowth upon induction of ΔK280 TauRD‐DsRed was rescued by LM‐031, which was counteracted by knockdown of NRF2 or CREB. LM‐031 further rescued the downregulated NRF2 and pCREB, reduced Aβ and Tau levels in hippocampus and cortex, and ameliorated cognitive deficits in streptozocin‐induced hyperglycemic 3 × Tg‐AD mice. Our findings strongly indicate the potential of LM‐031 for modifying AD progression by targeting HSPB1 to reduce Tau misfolding and activating NRF2 and CREB pathways to suppress apoptosis and promote neuron survival, thereby offering a new drug development avenue for AD treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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9. The role of mitochondria in the female germline: Implications to fertility and inheritance of mitochondrial diseases.
- Author
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Chiaratti, Marcos Roberto, Garcia, Bruna Martins, Carvalho, Karen Freire, Machado, Thiago Simões, Ribeiro, Fernanda Karina da Silva, and Macabelli, Carolina Habermann
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MITOCHONDRIA ,GERM cells ,MITOCHONDRIAL DNA abnormalities ,FEMALE infertility ,PARKINSON'S disease ,ALZHEIMER'S disease - Abstract
Mitochondria play a fundamental role during development of the female germline. They are fragmented, round, and small. Despite these characteristics suggesting that they are inactive, there is accumulating evidence that mitochondrial dysfunctions are a major cause of infertility and generation of aneuploidies in humans. In addition, mitochondria and their own genomes (mitochondrial DNA-mtDNA) may become damaged with time, which might be one reason why aging leads to infertility. As a result, mitochondria have been proposed as an important target for evaluating oocyte and embryo quality, and developing treatments for female infertility. On the other hand, mutations in mtDNA may cause mitochondrial dysfunctions, leading to severe diseases that affect 1 in 4,300 people. Moreover, very low levels of mutated mtDNA seem to be present in every person worldwide. These may increase with time and associate with late-onset degenerative diseases such as Parkinson disease, Alzheimer disease, and common cancers. Mutations in mtDNA are transmitted down the maternal lineage, following a poorly understood pattern of inheritance. Recent findings have indicated existence in the female germline of a purifying filter against deleterious mtDNA variants. Although the underlying mechanism of this filter is largely unknown, it has been suggested to rely on autophagic degradation of dysfunctional mitochondria or selective replication/transmission of non-deleterious variants. Thus, understanding the mechanisms regulating mitochondrial inheritance is important both to improve diagnosis and develop therapeutic tools for preventing transmission of mtDNA-encoded diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
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10. Circular RNA expression profile of Alzheimer's disease and its clinical significance as biomarkers for the disease risk and progression.
- Author
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Li, Yuanlong, Fan, Hua, Sun, Jun, Ni, Ming, Zhang, Lei, Chen, Ci, Hong, Xuejiao, Fang, Fengqin, Zhang, Wei, and Ma, Peizhi
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CIRCULAR RNA , *REVERSE transcriptase polymerase chain reaction , *ALZHEIMER'S disease , *RECEIVER operating characteristic curves , *KILLER cells , *DISEASE progression - Abstract
To investigate circular RNA (circRNA) expression profile via microarray, and further assess the potential of candidate circRNAs as biomarkers in Alzheimer's disease (AD). CircRNA expression profile in cerebrospinal fluid from 8 AD patients and 8 control (Ctrl) subjects was assessed by microarray. Subsequently, 10 candidate circRNAs from microarray were validated by reverse transcription quantitative polymerase chain reaction (RT-qPCR) in cerebrospinal fluid from 80 AD patients and 40 Ctrl subjects. By microarray, 112 circRNAs were upregulated and 51 circRNAs were downregulated in AD patients compared with Ctrl subjects, and these circRNAs were enriched in AD related pathways such as neurotrophin signaling pathway, natural killer cell mediated cytotoxicity and cholinergic synapse. By RT-qPCR, circ-LPAR1, circ-AXL and circ-GPHN were increased, whereas circ-PCCA, circ-HAUS4, circ-KIF18B and circ-TTC39C were decreased in AD patients compared with Ctrl subjects, and these circRNAs were disclosed to predict AD risk by receiver operating characteristics curve analysis. Further forward-stepwise multivariate logistic regression revealed that circ-AXL, circ-GPHN, circ-ITPR3, circ-PCCA and cic-TTC39C were independent predictive factors for AD risk. Besides, in AD patients, circ-AXL and circ-GPHN negatively correlated, while circ-PCCA and circ-HAUS4 positively correlated with mini–mental state examination score; Circ-AXL negatively correlated, while circ-PCCA, circ-HAUS4 and circ-KIF18B positively correlated with Aβ42 ; Circ-AXL and circ-GPHN positively correlated, whereas circ-HAUS4 negatively correlated with t-tau; Circ-AXL positively correlated with p-tau. Our study provides an overview of circRNA expression profile in AD, and identifies that circ-AXL, circ-GPHN and circ-PCCA hold clinical implications for guiding disease management in AD patients. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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