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Yellow mosaic disease, caused by wheat yellow mosaic virus (WYMV), is one of the most serious diseases of winter wheat (Triticum aestivum L.) in Japan. WYMV pathotype I is distributed mainly in western and central Japan, pathotype II in northern Japan, and pathotype III on a part of the southern island of Japan. Major resistance genes and quantitative trait loci for WYMV were previously identified on wheat chromosomes 2DL, 3BS, and 5AL. We evaluated a total of 165 modern Japanese wheat varieties, released by the Ministry of Agriculture, Forestry and Fisheries, for response to the three pathotypes in field trials, and genotyped them using microsatellite markers associated with the three WYMV resistance genes. Based on the data, we propose a model for the relationship between the three resistance genes and WYMV pathotypes. The results strongly suggest that the resistance conferred by the gene on 5AL has broken down with emergence of pathotype III, which may be derived from pathotype I.

Near-isogenic lines (NILs), carrying different combinations of Ppd-1 genes in the genetic background of an early-maturity cultivar Abukumawase were grown at two sites for two years to elucidate the effects of photoperiodic response genes on the growth and yield of early-maturity wheat ( Triticum aestivum L.) in central and southwestern Japan. Photoperiod-insensitive genes, Ppd-B1a and Ppd-D1a , accelerated young spike development, and this effect was predominant with Ppd-B1 with no additive effect among them. Ppd-B1a and Ppd-D1a also advanced the jointing stage, heading, and maturity, and the effect of Ppd-B1a on the jointing stage and heading was stronger than that of Ppd-D1a. An additive effect of two genes was detected for heading. Besides, Ppd-B1a and Ppd-D1a reduced culm length and grain weight, although the reduction effect on grain weight was not significant. Meanwhile, the mean temperature from double ridge formation stage to heading was lower in NILs with photoperiod-insensitive genes than in NILs with photoperiod-sensitive gene, and there was a significant correlation between mean temperature from double ridge formation stage to terminal spikelet formation stage and spikelet number per spike as well as between mean temperature from terminal spikelet formation stage to heading and grain number per spikelet. Therefore in a genetic background of extremely early-maturity line of spring type wheat, photoperiod-insensitive genes accelerated wheat growth and reduced spikelet numbers in central and southwestern Japan, and the effect of Ppd-B1a was stronger than that of Ppd-D1a.

The Ppd-A1 genotype of 240 Japanese wheat cultivars and 40 foreign cultivars was determined using a PCR-based method. Among Japanese cultivars, only 12 cultivars, all of which were Hokkaido winter wheat, carried the Ppd-A1a allele, while this allele was not found in Hokkaido spring wheat cultivars or Tohoku-Kyushu cultivars. Cultivars with a photoperiod-insensitive allele headed 6.9-9.8 days earlier in Kanto and 2.5 days earlier in Hokkaido than photoperiod-sensitive cultivars. The lower effect of photoperiod-insensitive alleles observed in Hokkaido could be due to the longer day-length at the spike formation stage compared with that in Kanto. Pedigree analysis showed that 'Purple Straw' and 'Tohoku 118' were donors of Ppd-A1a and Ppd-D1a in Hokkaido wheat cultivars, respectively. Wheat cultivars recently developed in Hokkaido carry photoperiod-insensitive alleles at a high frequency. For efficient utilization of Ppd-1 alleles in the Hokkaido wheat-breeding program, the effect of Ppd-1 on growth pattern and grain yield should be investigated. Ppd-A1a may be useful as a unique gene source for fine tuning the heading time in the Tohoku-Kyushu region since the effect of Ppd-A1a on photoperiod insensitivity appears to differ from the effect of Ppd-B1a and Ppd-D1a.

The genotypes of photoperiod response genes Ppd-B1 and Ppd-D1 in Japanese wheat cultivars were determined by a PCR-based method, and heading times were compared among genotypes. Most of the Japanese wheat cultivars, except those from the Hokkaido region, carried the photoperiod-insensitive allele Ppd-D1a, and heading was accelerated 10.3 days compared with the Ppd-D1b genotype. Early cultivars with Ppd-D1a may have been selected to avoid damage from preharvest rain. In the Hokkaido region, Ppd-D1a frequency was lower and heading date was late regardless of Ppd-D1 genotype, suggesting another genetic mechanism for late heading in Hokkaido cultivars. In this study, only 11 cultivars proved to carry Ppd-B1a, and all of them carried another photoperiod-insensitive allele, Ppd-D1a. The Ppd-B1a/Ppd-D1a genotype headed 6.7 days earlier than the Ppd-B1b/Ppd-D1a genotype, indicating a significant effect of Ppd-B1a in the genetic background with Ppd-D1a. Early-maturity breeding in Japan is believed to be accelerated by the introduction of the Ppd-B1a allele into medium-heading cultivars carrying Ppd-D1a. Pedigree analysis showed that Ppd-B1a in three extra-early commercial cultivars was inherited from ‘Shiroboro 21’ by early-heading Chugoku lines bred at the Chugoku Agriculture Experimental Station.

The contamination of cadmium (Cd) into the food chain can be harmful because Cd causes chronic health problems. To evaluate the breeding potential reducing the Cd concentration in wheat grain, we compared Cd concentrations in 237 wheat genotypes including Japanese landraces, Japanese cultivars and introduced alien cultivars for breeding using grain samples collected from upland fields in 2004−5 and 2005−6 growing seasons. The Cd concentration in wheat grain significantly varied with the growing seasons and with the experimental fields. Cultivars bred in northern Japan, including the recent Japanese leading cultivar ‘Hokushin’, tended to have a low Cd concentration in grain compared with that bred in central and southern Japan. Simple correlation analysis between Cd concentration in grain and agronomic characteristics revealed that the Cd concentration in grain showed significant negative correlations with stem number, culm length and spikelet number per spike, and showed significant positive correlation with SPAD value (chlorophyll content) of flag leaf. Stepwise multipleregression analysis showed that the genotypic variation of Cd concentration in grain was associated with the culm length and spiklet number per spike. This study clarified the geographical pattern of genotypes with different Cd concentrations in grain in Japanese wheat cultivars. Cultivars originating from northern Japan may be useful genetic resources to develop cultivars with a low Cd concentration in grain to be grown in the areas where Cd accumulation in wheat grain is a problem.

The uzu gene shows typical semi-dwarf plant type and has resulted in lodging resistance and improved canopy structure in barley (Hordeum vulgare L.). The geographic distribution of ‘uzu’ lines is limited in East Asia including Japan, Korean peninsula and China. For many years, majority of cultivated six-rowed barley varieties in southern Japan were ‘uzu’ type. Inheritance of the uzu gene, located on chromosome 3H, is monogenic recessive and the expression is pleiotropic during developmental process. In cereal crop plants, several semi-dwarf genes have been widely used in breeding programs to increase productivity and it is known that several of these semi-dwarf genes were derived from gibberellin (GA)-related mutations. The barley dwarfing gene uzu is independent to GA. This characteristics are known earlier. In this study, we characterized uzu gene in molecular aspects. As the result of comprehensive study using several pairs of isogenic lines, we found the morphological and physiological similarities of barley uzu gene to rice dwarf mutant, d61. D61 encodes OsBRI1, which is homologous gene for Brassinosteroid insensitive 1 in Arabidopsis. We also found that ‘uzu’ lines specific single nucleotide polymorphism (SNP) contributed for amino acid substitution in barley homologous sequence of OsBRI1, HvBRI1. Linkage analysis using a segregating population for uzu showed the co-segregation between uzu and HvBRI1. Furthermore, as the results of derived cleaved amplified polymorphic sequences (dCAPS) marker analysis using more than 260 ‘uzu’ landraces and the genomic sequencing analysis of HvBRI1 gene derived from 19 barley accessions, all the ‘uzu’ lines investigated in this study had the same SNP in putative kinase domain of HvBRI1. On the basis of these findings, we discussed the phylogeny of ‘uzu’ landraces in East Asia.

In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi', a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression, resulting in strong grain dormancy. We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties, and we found that 169 of 324 varieties carry the Zen-type SNP. In Japanese commercial varieties, the frequency of the Zen-type SNP was remarkably high in the southern part of Japan, but low in the northern part. To examine the relationship between MFT-3A genotype and grain dormancy, we performed a germination assay in three wheat-growing seasons. On average, the varieties carrying the Zen-type SNP showed stronger grain dormancy than the varieties carrying the non-Zen-type SNP. Among commercial cultivars, 'Iwainodaichi' (Kyushu), 'Junreikomugi' (Kinki-Chugoku-Shikoku), 'Kinuhime' (Kanto-Tokai), 'Nebarigoshi' (Tohoku-Hokuriku), and 'Kitamoe' (Hokkaido) showed the strongest grain dormancy in each geographical group, and all these varieties, except for 'Kitamoe', were found to carry the Zen-type SNP. In recent years, the number of varieties carrying the Zen-type SNP has increased in the Tohoku-Hokuriku region, but not in the Hokkaido region.

Pre-harvest sprouting, the germination of mature seeds on the mother plant under moist condition, is a serious problem in cereals. To investigate the effect of reduced abscisic acid (ABA) catabolism on germination in hexaploid wheat (Triticum aestivum L.), we cloned the wheat ABA 8′-hydroxyase gene which was highly expressed during seed development (TaABA8′OH1) and screened for mutations that lead to reduced ABA catabolism. In a screen for natural variation, one insertion mutation in exon 5 of TaABA8′OH1 on the D genome (TaABA8′OH1-D) was identified in Japanese cultivars including ‘Tamaizumi’. However, a single mutation in TaABA8′OH1-D had no clear effect on germination inhibition in double haploid lines. In a screen for a mutation, one deletion mutant lacking the entire TaABA8′OH1 on the A genome (TaABA8′OH1-A), TM1833, was identified from gamma-ray irradiation lines of ‘Tamaizumi’. TM1833 (a double mutant in TaABA8′OH1-A and TaABA8′OH1-D) showed lower TaABA8′OH1 expression, higher ABA content in embryos during seed development under field condition and lower germination than those in ‘Tamaizumi’ (a single mutant in TaABA8′OH1-D). These results indicate that reduced ABA catabolism through mutations in TaABA8′OH1 may be effective in germination inhibition in field-grown wheat.

In many temperate woody species, dormancy is induced by short photoperiods. Earlier studies have shown that the photoreceptor phytochrome A (phyA) promotes growth. Specifically, Populus plants that over-express the oat PHYA gene (oatPHYAox) show daylength-independent growth and do not become dormant. However, we show that oatPHYAox plants could be induced to set bud and become cold hardy by exposure to a shorter, non-24 h diurnal cycle that significantly alters the relative position between endogenous rhythms and perceived light/dark cycles. Furthermore, we describe studies in which the expression of endogenous Populus tremula × P. tremuloides PHYTOCHROME A (PttPHYA) was reduced in Populus trees by antisense inhibition. The antisense plants showed altered photoperiodic requirements, resulting in earlier growth cessation and bud formation in response to daylength shortening, an effect that was explained by an altered innate period that leads to phase changes of clock-associated genes such as PttCO2. Moreover, gene expression studies following far-red light pulses show a phyA-mediated repression of PttLHY1 and an induction of PttFKF1 and PttFT. We conclude that the level of PttPHYA expression strongly influences seasonally regulated growth in Populus and is central to co-ordination between internal clock-regulated rhythms and external light/dark cycles through its dual effect on the pace of clock rhythms and in light signaling.

In Arabidopsis, two genes of abscisic acid (ABA) 8′-hydroxylase (cytochrome P450 (CYP) 707A1 and A2) have been found to play important roles in seed dormancy through the regulation of ABA content in seeds. In order to examine the role of wheat ABA 8′-hydroxylase gene in seed dormancy, a diploid wheat ABA 8′-hydroxylase gene was cloned that showed high similarity to a barley ABA8′-hydroxylase gene (HvABA8′OH-2), and the cloned gene was designated as TmABA8′OH-2. Using recombinant inbred lines derived from a cross between diploid wheat Triticum boeoticum L. (Tb) and Triticum monococcum L. (Tm), TmABA8′OH-2 has been mapped to near the centromeric region of the long arm of chromosome 5Am, where the major seed dormancy QTL has been previously found. Comparison of the deduced amino acid sequences of TmABA8′OH-2 between Tb and Tm revealed five amino acid residue substitutions. These amino acid residues have distinctly different characteristics, and one of the substitutions occurs in the highly conserved amino acid residues in CYP707A family, indicating that these substitutions may have effects on the enzyme activities. Moreover, hexaploid wheat TmABA8′OH-2 homologue revealed that the level of its expression during seed development peaks at mid-maturation stage. This resembles the expression pattern of the Arabidopsis CYP707A1, which was shown to control seed dormancy. These results imply a possibility that TmABA8′OH-2 might be involved in seed dormancy, and associated with the QTL on chromosome 5Am.