1. Epigenetic modifications underlie the differential adipogenic potential of preadipocytes derived from human subcutaneous fat tissue.
- Author
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Kubota Y, Nagano H, Kosaka K, Ogata H, Nakayama A, Yokoyama M, Murata K, Akita S, Kuriyama M, Furuyama N, Kuroda M, Tanaka T, and Mitsukawa N
- Subjects
- Adipocytes classification, Adipocytes cytology, Adipokines metabolism, CpG Islands, DNA Methylation, Fatty Acid-Binding Proteins genetics, Fatty Acid-Binding Proteins metabolism, Female, Gene Expression Profiling, Genome-Wide Association Study, Histones genetics, Histones metabolism, Humans, Leptin genetics, Leptin metabolism, Mammaplasty methods, Mammary Glands, Human cytology, Mammary Glands, Human metabolism, Mammary Glands, Human surgery, Mesenchymal Stem Cells classification, Mesenchymal Stem Cells cytology, Organ Specificity, PPAR gamma metabolism, Primary Cell Culture, Subcutaneous Fat cytology, Subcutaneous Fat metabolism, Unsupervised Machine Learning, Adipocytes metabolism, Adipogenesis genetics, Adipokines genetics, Epigenesis, Genetic, Mesenchymal Stem Cells metabolism, PPAR gamma genetics
- Abstract
Ceiling culture-derived preadipocytes (ccdPAs) and adipose-derived stem cells (ASCs) can be harvested from human subcutaneous fat tissue using the specific gravity method. Both cell types possess a similar spindle shape without lipid droplets. We previously reported that ccdPAs have a higher adipogenic potential than ASCs, even after a 7-wk culture. We performed a genome-wide epigenetic analysis to examine the mechanisms contributing to the adipogenic potential differences between ccdPAs and ASCs. Methylation analysis of cytosines followed by guanine (CpG) using a 450-K BeadChip was performed on human ccdPAs and ASCs isolated from three metabolically healthy females. Chromatin immunoprecipitation sequencing was performed to evaluate trimethylation at lysine 4 of histone 3 (H3K4me3). Unsupervised machine learning using t-distributed stochastic neighbor embedding to interpret 450,000-dimensional methylation assay data showed that the cells were divided into ASC and ccdPA groups. In Kyoto Encyclopedia of Genes and Genomes pathway analysis of 1,543 genes with differential promoter CpG methylation, the peroxisome proliferator-activated receptor (PPAR) and adipocytokine signaling pathways ranked in the top 10 pathways. In the PPARγ gene, H3K4me3 peak levels were higher in ccdPAs than in ASCs, whereas promoter CpG methylation levels were significantly lower in ccdPAs than in ASCs. Similar differences in promoter CpG methylation were also seen in the fatty acid-binding protein 4 and leptin genes. In conclusion, we analyzed the epigenetic status of adipogenesis-related genes as a potential mechanism underlying the differences in adipogenic differentiation capability between ASCs and ccdPAs.
- Published
- 2021
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