1. A pan-cancer bioinformatic analysis of the carcinogenic role of SMARCA1 in human carcinomas.
- Author
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Dai L, Mugaanyi J, Zhang T, Tong J, Cai X, Lu C, and Lu C
- Subjects
- Carcinogenesis genetics, Carcinogens, Computational Biology, DNA-Binding Proteins, Female, Humans, Transcription Factors genetics, Adenocarcinoma genetics, Adenocarcinoma of Lung, Colonic Neoplasms, Uterine Cervical Neoplasms
- Abstract
SMARCA1is a mammalian imitation switch (ISWI) gene that encodes for SNF2L. SNF2L is involved in regulating cell transition from a committed progenitor state to a differentiated state. Although many papers have detailed the correlation between SMARCA1 and different cancers, no pan-cancer analysis has been conducted to date. We started by exploring the potential carcinogenic role of SMARCA1 across 33 carcinomas using the cancer genome atlas (TCGA) and the genotype-tissue expression (GTEx) databases. The expression of SMARCA1 was significantly elevated in some tumor types but not in others. There was a distinct relationship between SMARCA1 expression and patient prognosis. S116 phosphorylation levels were up-regulated in both lung adenocarcinoma and uterine corpus endometrial carcinoma. The expression level of SMARCA1 was positively correlated with cancer-associated fibroblasts infiltration in a number of tumors, such as colon adenocarcinoma, cervical squamous cell carcinoma and endocervical adenocarcinoma. It was also associated with CD8+ T-cell infiltration in head and neck squamous cell carcinoma and lung adenocarcinoma. Furthermore, SMARCA1 is involved in chromatin remodeling and protein processing-associated mechanisms. Our study presents an initial assessment and illustration of the carcinogenic role of SMARCA1 in different carcinomas., Competing Interests: The authors have declared that no conflict of interest exists.
- Published
- 2022
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