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Recent study indicates that by using the inertial measurement unit (IMU) sensors inside smartphones, we can obtain similar navigation solutions to the professional ones. However, the sampling rates of the gyros and accelerometers inside some types of smartphones are not set in the same frequencies, i.e., the gyros of "Huawei p40" are in 50 Hz while the accelerometer is 100 Hz. The conventional method is resampling the higher frequency to the lower frequency ones, which means the resampled accelerometer will lose half frequency observations. In this work, a modified Kalman filter was proposed to integrate all these different rate IMU data in the GNSS/IMU-smartphone coupled navigation. To validate the proposed method, a terrestrial test with two different types of android smartphones was done. With the proposed method, a slight improvement of the attitude solutions can be seen in the experiments under the GNSS open-sky condition, and the obvious improvement of the attitude solutions can be witnessed at the simulated GNSS denied situation. The improvements by 45% and 23% of the horizontal position accuracy can be obtained from the experiments under the GNSS outage of 50 s in a straight line and 30 s in a turning line, respectively. [ABSTRACT FROM AUTHOR]