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Plant and soil nitrogen isotope ratios (d15N) were studied in experimental grassland plots of varying species richness. We hypothesized that partitioning of different sources of soil nitrogen among four plant functional groups (legumes, grasses, small herbs, tall herbs) should increase with diversity. Four years after sowing, all soils were depleted in 15N in the top 5 cm whereas in non-legume plots soils were enriched in 15N at 5–25 cm depth. Decreasing foliar d15N and Dd15N (= foliar d15N - soil d15N) values in legumes indicated increasing symbiotic N2 fixation with increasing diversity. In grasses, foliar Dd15N also decreased with increasing diversity suggesting enhanced uptake of N depleted in 15N. Foliar Dd15N values of small and tall herbs were unaffected by diversity. Foliar Dd15N values of grasses were also reduced in plots containing legumes, indicating direct use of legume-derived N depleted in 15N. Increased foliar N concentrations of tall and small herbs in plots containing legumes without reduced foliar d15N indicated that these species obtained additional mineral soil N that was not consumed by legumes. These functional group and species specific shifts in the uptake of different N sources with increasing diversity indicate complementary resource use in diverse communities.

Plant resistance (R) genes are highly effective in protecting plants against diseases, but pathogens can overcome such genes relatively easily by adaptation. Consequently, in many cases R genes do not confer durable resistance in agricultural environments. One possible strategy to make the use of R genes more sustainable depends on the modification of R genes followed by transformation. To test a possible transgenic use of R genes, we overexpressed in wheat the Pm3b resistance gene against powdery mildew under control of the maize ubiquitin promoter. Four independent transgenic lines were tested in the greenhouse and the field during 3 years. The four lines showed a five- to 600-fold transgene overexpression compared with the expression of the endogenous Pm3b gene in the landrace 'Chul'. Powdery mildew resistance was significantly improved in all lines in the greenhouse and the field, both with naturally occurring infection or after artificial inoculation. Under controlled environmental conditions, the line with the strongest overexpression of the Pm3b gene showed a dramatic increase in resistance to powdery mildew isolates that are virulent on the endogenous Pm3b. Under a variety of field conditions, but never in the greenhouse, three of the four transgenic lines showed pleiotropic effects on spike and leaf morphology. The highest overexpressing line had the strongest side effects, suggesting a correlation between expression level and phenotypic changes. These results demonstrate that the successful transgenic use of R genes critically depends on achieving an optimal level of their expression, possibly in a tissue-specific way.

An important goal of ecological compensation areas (ECAs) is to increase biodiversity in adjacent intensively managed farmland and the agricultural landscape at large. We tested whether this goal can be achieved in the case of the agri-environmental restoration scheme implemented for Swiss grassland using five large arthropod taxa (bees, true bugs, orthopterans, ground beetles and spiders) representing different ecological and functional groups. The species richness and abundance of all groups and species, respectively, was measured along 100 m transects from ECA-meadows into the adjacent intensively managed grassland at 24 sites. Species richness of all arthropod taxa except ground beetles, and the abundance of 63% of the 234 arthropod species sampled with at least five individuals were higher in ECA-meadows than in their surroundings, while the total abundance of spiders and ground beetles was higher in intensively managed meadows. The abundance of 8% of these species were only increased in the ECA-meadows themselves (“stenotopic” species) but 40% had increased abundance both in the ECA-meadows and the adjacent grassland, declining exponentially with increasing distance from ECA-meadows (“edge species”). The 90%-decay distances for these edge species differed among taxonomic groups (117 ± 18 m for true bugs, 137 ± 24 m for spiders, 152 ± 34 m for bees, 167 ± 5.7 m for orthopterans, 185 ± 34 m for ground beetles; mean ±1 standard error) and independent of taxonomic group were larger for large-sized or predacious species than for small-sized or phytophagous species. Because the average distance between neighbouring ECA-meadows in Swiss grassland is only 73 ± 4 m, the current agri-environment scheme very likely enhances arthropod diversity and possibly associated ecosystem services in the Swiss agricultural landscape at large.

Relative growth rate (RGR) is currently the most commonly used method for measuring and comparing species' intrinsic growth potential. Comparative studies have, for example, revealed that small-seeded species have higher RGR, leading to the common belief that small-seeded species possess physiological adaptations for rapid growth that would allow them to outgrow large-seeded species, given sufficient time. We show that, because RGR declines as individual plants grow, it is heavily biased by initial size and does not measure the size-corrected growth potential that determines the outcome of competition in the long-term. We develop a daily growth model that includes a simple mechanistic representation of aboveground and belowground growth and its dependency on plant size and environmental factors. Intrinsic growth potential is encapsulated by the size-independent growth coefficient, G. We parameterized the model using repeated-harvest data from 1724 plants of nine species growing in contrasting nutrient and temperature regimes. Using information-theoretic criteria, we found evidence for interspecific differences in only three of nine model parameters: G, aboveground allocation, and frost damage. With other parameters shared between species, the model accurately reproduced above- and belowground biomass trajectories for all nine species in each set of environmental conditions. In contrast to conventional wisdom, the relationship between G and seed size was positive, despite a strong negative correlation between seed size and average RGR, meaning that large-seeded rather than small-seeded species have higher size-corrected growth potential. Further, we found a significant positive correlation between G and frost damage that, according to simulations, causes rank reversals in final biomass under daily temperature changes of +/- 5 degrees C. We recommend the wider use of this new kind of plant growth analysis as a better way of understanding underlying differences in species' physiology; but we recognize that RGR is still a useful metric if considering the potential rate of population increase in empty habitats.

Biodiversity is an essential determinant of ecosystem functioning. Numerous studies described positive effects of diversity on the functioning of communities arising from complementary resource use and facilitation. However, high biodiversity may also increase competitive interactions, fostering antagonism and negatively affecting community performance. Using experimental bacterial communities we differentiated diversity effects based on genotypic richness and dissimilarity. We show that these diversity characteristics have opposite effects on ecosystem functioning. Genotypic dissimilarity governed complementary resource use, improving ecosystem functioning in complex resource environments. Contrastingly, genotypic richness drove allelopathic interactions, mostly reducing ecosystem functioning. The net biodiversity effect on community performance resulted from the interplay between the genetic structure of the community and resource complexity. These results demonstrate that increasing richness, without concomitantly increasing dissimilarity, can decrease ecosystem functioning in simple environments due to antagonistic interactions, an effect insufficiently considered so far in mechanistic models of the biodiversity-ecosystem functioning relationship.

cited By 96; International audience; no abstract

International audience; The diversity-stability hypothesis states that current losses of biodiversity can impair the ability of an ecosystem to dampen the effect of environmental perturbations on its functioning. Using data from a long-term and comprehensive biodiversity experiment, we quantified the temporal stability of 42 variables characterizing twelve ecological functions in managed grassland plots varying in plant species richness. We demonstrate that diversity increases stability i) across trophic levels (producer, consumer), ii) at both the system (community, ecosystem) and the component levels (population, functional group, phylogenetic clade), and iii) primarily for aboveground rather than belowground processes. Temporal synchronization across studied variables was mostly unaffected with increasing species richness. This study provides the strongest empirical support so far that diversity promotes stability across different ecological functions and levels of ecosystem organization in grasslands.

BACKGROUND: Agri-environment schemes play an increasingly important role for the conservation of rare plants in intensively managed agricultural landscapes. However, little is known about their effects on gene flow via pollen dispersal between populations of these species. METHODOLOGY/PRINCIPAL FINDINGS: In a 2-year experiment, we observed effective pollen dispersal from source populations of Centaurea jacea in restored meadows, the most widespread Swiss agri-environment scheme, to potted plants in adjacent intensively managed meadows without other individuals of this species. Potted plants were put in replicated source populations at 25, 50, 100 m and where possible 200 m distance from these source populations. Pollen transfer among isolated plants was prevented by temporary bagging, such that only one isolated plant was accessible for flower visitors at any one time. Because C. jacea is self-incompatible, seed set in single-plant isolates indicated insect mediated effective pollen dispersal from the source population. Seed set was higher in source populations (35.7+/-4.4) than in isolates (4.8+/-1.0). Seed set declined from 18.9% of that in source populations at a distance of 25 m to 7.4% at 200 m. At a distance of 200 m seed set was still significantly higher in selfed plants, indicating long-distance effective pollen dispersal up to 200 m. Analyses of covariance suggested that bees contributed more than flies to this long-distance pollen dispersal. We found evidence that pollen dispersal to single-plant isolates was positively affected by the diversity and flower abundance of neighboring plant species in the intensively managed meadow. Furthermore, the decline of the dispersal was less steep when the source population of C. jacea was large. CONCLUSIONS: We conclude that insect pollinators can effectively transfer pollen from source populations of C. jacea over at least 200 m, even when "recipient populations" consisted of single-plant isolates, suggesting that gene flow by pollen over this distance is very likely. Source population size and flowering environment surrounding recipient plants appear to be important factors affecting pollen dispersal in C. jacea. It is conceivable that most insect-pollinated plants in a network of restored sites within intensively managed grassland can form metapopulations, if distances between sites are of similar magnitude as tested here.

1. In plant communities, a better use of nitrogen for growth and access to additional nitrogen by N-2 fixing legumes have been suggested as mechanisms that contribute to the positive relationship between species richness and above-ground biomass production. We studied above-ground biomass production, and plant and soil nitrogen in a biodiversity experiment using a pool of nine potentially dominant grassland species (five grasses: Alopecurus pratensis, Arrhenatherum elatius, Dactylis glomerata, Phleum pratense, Poa trivialis; two legumes: Trifolium pratense, T. repens; two non-legume herbs: Anthriscus sylvestris, Geranium pratense) in the second and third year after establishment. 2. Total above-ground biomass and nitrogen pools increased with species richness in the second year. In the third year, the positive effect of species richness on above-ground biomass was less pronounced but still significant, while nitrogen pools did not increase with species richness. Above-ground nitrogen pools and biomass production were significantly lower in the third year. 3. Above-ground nitrogen pools of mixtures were higher than expected from monocultures in 94% of cases and increased with the species richness of mixtures in the second year. In the third year, only 55% of the mixtures had higher nitrogen yields than expected. A significant increase in the amount of biomass produced per gram nitrogen, a decrease of soil nitrate pools and the inability of mixtures to use soil nitrate more completely than expected from monocultures indicated lower nitrogen availability in the third year. Complementary resource use was not solely dependent on the occurrence of N-2 fixing legumes in mixtures, but also played a role in mixtures without legumes. 4. Synthesis. Our study shows that biodiversity effects through complementary nitrogen use can occur among potentially dominant grassland species. The degree of resource partitioning depends on growing conditions, with stronger complementarity effects under nutrient-rich conditions. [References: 69]

1. Agri-environment schemes attempt to counteract the loss of biodiversity and associated ecosystem services such as pollination and natural pest control in agro-ecosystems. However, only a few studies have evaluated whether these attempts are successful. 2. We studied the effects of managing meadows according to the prescriptions of ecological compensation areas (ECA), the most widely adopted agri-environment scheme in Switzerland, on both pollinator species richness and abundance, and the reproductive success of plants in nearby intensively managed meadows (IM). 3. We established arrays of four pots, each containing individuals of three insect-pollinated, non-autogamous `phytometer¿ species (Raphanus sativus, Hypochaeris radicata and Campanula glomerata), in ECA and adjacent IM at increasing distances from the ECA at 13 sites. 4. Species richness and abundance of hoverflies, solitary bees and large-sized pollinators (mainly social bees and butterflies) were significantly higher in ECA than in adjacent IM. Species richness and abundance of small-sized pollinators in IM declined significantly with increasing distance from ECA, whereas large-sized pollinators were not significantly affected by distance. Plant species richness and flower abundance were the major drivers of pollinator species richness and abundance; the area of an ECA had no significant influence. 5. Individual plants of R. sativus and C. glomerata produced more and heavier seeds in ECA than in IM. Furthermore, the number of seeds of these two phytometer species was positively correlated with species richness and abundance of bees. No such effects were observed for individual plants of H. radicata. The number of fruits and seeds per plant of R. sativus in IM decreased with increasing distance from ECA. 6. Synthesis and applications. We conclude that establishing ECA is an effective method of enhancing both pollinator species richness and abundance and pollination services to nearby intensely managed farmland. Our study emphasizes the importance of connectivity between ECA in maintaining diverse pollinator communities and thereby providing pollination services in agricultural landscapes.

The predicted ongoing increase of atmospheric carbon dioxide levels is considered to be one of the main threats to biodiversity due to potential changes in biotic interactions.We tested whether effects of intra- and interspecific planting density of the calcareous grassland perennials Bromus erectus and Carex flacca change in response to elevated [CO2](600 ppm) by using factorial combinations of seven densities (0, 1, 2, 4, 8, 16, 24 tillers per 8 x 8 cm² cell)of both species in plots with and without CO2 enrichment. Although aboveground biomass of C. flacca was increased by 54% under elevated [CO2], the combined aboveground biomass of the whole stand was not significantly increased. C. flacca tended to produce more tillers under elevated [CO2] while B. erectus produced less tillers. The positive effect of [CO2] on the number of tillers of C. flacca was strongest at high intraspecific densities. On the other hand, the negative effect of [CO2] on the number of tillers of B. erectus was not present at intermediate intraspecific planting densities. Seed production of C. flacca was more than doubled under elevated [CO2], while seed production of B. erectus was not affected. Moreover, the mass per seed of C. flacca was increased by elevated [CO2] at intermediate interspecific planting densities while the mass per seed of B. erectus was decreased by elevated [CO2] at high interspecific planting densities. Our results show that the responses of C. flacca and B.erectus to elevated [CO2] depend in a complex way on initial planting densities of both species. In other words, competition between these two model species is both [CO2]- and density dependent. On average, however, the effects of [CO2] on the individual species indicate that the composition of calcareous grasslands is likely to change under elevated [CO2] in favor of C. flacca.

1. Increasing concern over the loss of biodiversity in agricultural landscapes was one of the reasons for the introduction of agri-environment schemes in Europe. These schemes compensate farmers financially for any loss of income associated with measures aimed to benefit biodiversity. Nevertheless, more than a decade after the introduction of the schemes, only a limited number of studies evaluating their ecological effects have been published. We assessed the effect of the Swiss agri-environment scheme that was designed to maintain and increase species richness in hay meadows. In Switzerland, hay meadows under this agri-environment scheme (ECA hay meadows) are the most widely adopted environmental measure to conserve biodiversity. 2. We tested whether meadows under the agri-environment scheme had higher species richness and species evenness than control meadows, whether species richness and species evenness were higher in the centre than at the edge of meadows, and whether these effects differed between geographical regions. 3. Biodiversity was sampled in 42 hay meadows in three different regions, using a pair-wise comparison of ECA hay meadows with conventionally managed hay meadows. Biodiversity was estimated by assessing species richness and species evenness of four taxonomic groups representing different trophic levels: vascular plants, grasshoppers, wild bees and spiders. 4. Species richness of vascular plants, grasshoppers and wild bees was significantly higher on ECA hay meadows than on control meadows, but species richness of spiders did not differ. These results were consistent across the three study sites, except for the species richness of grasshoppers, which showed no difference between the ECA meadows and the control meadows in one region. 5. Species evenness was significantly higher on ECA hay meadows than on control meadows for plants and bees but not for spiders and grasshoppers. These results were consistent across the three study regions for bees and spider species only. 6. The species richness of vascular plants and spiders was higher at the edge than in the centre of both ECA and control meadows, suggesting a more extensive management in the meadow edges and a high species exchange between adjacent habitats for these two groups. 7. Synthesis and applications. We conclude that the Swiss agri-environment scheme for hay meadows positively affects biodiversity. The scheme should be maintained and farmers should be encouraged to engage in long-term extensive management. For spiders, the current management restrictions are not sufficient, most probably because of inappropriate vegetation structure. Therefore, organisms that particularly depend on vegetation structure should be targeted with additional restrictions: not only the time of the first cut but also the frequency of subsequent cuts and the mowing technique may have to be adjusted.

Sonja Wipf, Christian Rixen, Markus Fischer, Bernhard Schmid, Veronika Stoeckli (2005): Effects of ski piste preparation on alpine vegetation. Journal of Applied Ecology 42: 306-316, DOI: https://dx.doi.org/10.1111/j.1365-2664.2005.01011.x

The growth form along the continuum from compact phalanx plants to more loosely packed guerilla plants is an important life-history trait in clonal plants. Prerequisite for its evolution is heritable genetic variation. Starting with 102 genotypes of the stoloniferous herb Ranunculus reptans, we performed one selection experiment on spatial spread per rosette as measure of guerillaness (broad-sense heritability 0.198) and another on plasticity in this trait in response to competition (broad-sense heritability 0.067). After two generations, spatial spread was 36.9% higher in the high line than in the low line (realized heritability ± SE 0.149 ± 0.039). Moreover, compared with the low line genotypes of the high line had fewer rosettes, a lower proportion of flowering rosettes, a higher proportion of rooted rosettes, more branches per rosette, longer internodes and longer leaves. In the second experiment, we found no significant direct response to selection for high and low plasticity in spatial spread (realized heritability ± SE -0.029 ± 0.063), despite a significant correlated response in plasticity in the length of the first three stolon internodes. Our study indicates a high potential for further evolution of the clonal growth form in R. reptans, but not for its plasticity, and it demonstrates that the clonal growth form does not evolve independently of other clonal lifehistory characteristics.

Sacred natural sites (SNS) are instances of biocultural landscapes protected for spiritual motives. These sites frequently host important biological values in areas of Asia and Africa, where traditional resource management is still upheld by local communities. In contrast, the biodiversity value of SNS has hardly been quantitatively tested in Western contexts, where customs and traditions have relatively lost importance due to modernization and secularization. To assess whether SNS in Western contexts retain value for biodiversity, we studied plant species composition at 30 SNS in Central Italy and compared them with a paired set of similar but not sacred reference sites. We demonstrate that SNS are important for conserving stands of large trees and habitat heterogeneity across different land-cover types. Further, SNS harbor higher plant species richness and a more valuable plant species pool, and significantly contribute to diversity at the landscape scale. We suggest that these patterns are related not only to pre-existent features, but also to traditional management. Conservation of SNS should take into account these specificities, and their cultural as well as biological values, by supporting the continuation of traditional management practices.

In kleinen Pflanzenpopulationen kann genetische Erosion zu einer zunehmenden Ähnlichkeit zwischen den Pflanzen innerhalb dieser Populationen führen. Die daraus resultierende Inzuchtdepression kann unter den bestehenden Umweltbedingungen durch die natürliche Selektion reduziert werden, kann aber unter Umweltstreß erneut ansteigen. Um diese Hypothese zu testen, wurden Pflanzen kleiner (< 50 blühende Pflanzen, n=5 Populationen) und großer Populationen (> 400, n=5) der endemischen Art Cochlearia bavarica handbestäubt. Die aus den Handbestäubungen resultierenden Keimlinge wurden unter verschiedenen Umweltbedingungen aufgezogen (experimentelle Manipulation von Licht und Wasser: normale und reduzierte Bedingungen). Um zusätzlich zur Variation der Populationsgröße auch unterschiedliche Grade von Inzuchtdepression zu erzeugen, wurden die Mutterpflanzen mit Pollen von neun Pollenspendern aus einer anderen Population oder mit einem oder neun Pollenspendern aus der gleichen Population handbestäubt. Das Wachstum der Nachkommen wurde über 300 Tage beobachtet. Die Größe der Nachkommen variierte signifikant zwischen den verschiedenen Ursprungspopulationen und Mutterpflanzen. Zusätzlich reagierten die Ursprungspopulationen (und Mutterpflanzen) unterschiedlich auf den experimentell erzeugten Umweltstreß, aber nicht im erwarteten Sinne einer Benachteiligung kleiner gegenüber großer Populationen. Nachkommen, die aus Handbestäubungen mit neun Pollenspendern einer benachbarten Population stammten, waren in sieben von zehn Populationen signifikant größer als die Nachkommen, die aus Handbestäubungen innerhalb der Populationen hervorgingen. Nachkommen, die aus Handbestäubungen mit einem Pollenspender aus derselben Population hervorgingen, waren in fünf von zehn Populationen kleiner als die Nachkommen aus einer Handbestäubung mit neun Pollenspendern aus derselben Population. Dies weist darauf hin, daß die genetische Vielfalt innerhalb aller Cochlearia bavarica-Populationen relativ niedrig war, unabhängig von deren Größe. Pollen von außerhalb einer Population oder eine zunehmende Anzahl an Pollenspendern können Inzucht und Inzuchtdepression vermindern. Signifikante Interaktionen zwischen Umweltstreß und Handbestäubungsbehandlung zeigten aber auch, daß dieser positive Effekt unter Umweltstreß beeinträchtigt werden kann. Habitat degradation and loss can reduce size and genetic variability of natural populations, increasing individual homozygosity and average relatedness between individuals. While the resulting inbreeding depression may be reduced by natural selection under prevailing environmental conditions, it may increase again under environmental stress. To investigate the effect of environmental stress on offspring performance and the expression of inbreeding depression, we hand-pollinated maternal plants in small (< 100, n=5) and large populations (> 400 flowering plants, n=5) of the rare plant Cochlearia bavarica (Brassicaceae) and raised the offspring under experimentally manipulated water and light regimes (normal or reduced supply). In addition to considering natural variation in inbreeding levels due to population size, we manipulated pollen donor provenance and diversity. Maternal plants were pollinated with nine donors from a different population or with one or nine donors from the same population. One further inflorescence of each maternal plant was exposed to free pollination. Offspring growth and survival were monitored over 300 days. Offspring performance varied significantly among populations and maternal plants. Environmental stress interacted significantly with these factors. However, there was no general indication that offspring from small populations were more negatively affected. In seven out of 10 populations, offspring derived from between-population pollination performed better than offspring derived from within-population pollination. Also, in five out of 10 populations, average offspring size was higher after within-population pollination with nine than after pollination with one pollen donor. These results suggest low genetic diversity within C. bavarica populations, both smaller and larger ones. Interactions between environmental stress and pollination treatment indicated that using pollen donors from outside a population or increasing the number of pollen donors can reduce inbreeding depression, but that this beneficial effect is impaired under stressful conditions.

Aims Aboveground biomass production commonly increases with species richness in plant biodiversity experiments. Little is known about the direct mechanisms that cause this result. We tested if by occupying different heights and depths above and below ground, and by optimizing the vertical distribution of leaf nitrogen, species in mixtures can contribute to increased resource uptake and, thus, increased productivity of the community in comparison with monocultures. Methods We grew 24 grassland plant species, grouped into four nonoverlapping species pools, in monoculture and 3- and 6-species mixture in spatially heterogeneous and uniform soil nutrient conditions. Layered harvests of above- and belowground biomass, as well as leaf nitrogen and light measurements, were taken to assess vertical canopy and root space structure.

A large number of studies have now explicitly examined the relationship between species loss and ecosystem functions. The results from such “biodiversity experiments” have previously been collated and analyzed by two independent groups of authors. Both data sets show that reductions in species diversity generally result in reduced ecosystem functioning, even though the studies cover a wide range of ecosystems, diversity manipulations, and response variables. In this chapter, we analyze the two data sets in parallel to explain variation in the observed functional effects of biodiversity. The main conclusions are: 1) the functional effects of biodiversity differ among ecosystem types (but not between terrestrial and aquatic systems), 2) increases in species richness enhance community responses but negatively affect population responses, 3) stocks are more responsive than rates to biodiversity manipulations, 4) when diversity reductions at one trophic level affect a function at an adjacent trophic level (higher or lower), the function is often reduced 5) increased biodiversity results in increased invasion resistance. We also analyze the shape of the relationship between biodiversity and response variables, and discuss some consequences of different relationships.

Background Current imaging methods such as Magnetic Resonance Imaging (MRI), Confocal microscopy, Electron Microscopy (EM) or Selective Plane Illumination Microscopy (SPIM) yield three-dimensional (3D) data sets in need of appropriate computational methods for their analysis. The reconstruction, segmentation and registration are best approached from the 3D representation of the data set. Results Here we present a platform-independent framework based on Java and Java 3D for accelerated rendering of biological images. Our framework is seamlessly integrated into ImageJ, a free image processing package with a vast collection of community-developed biological image analysis tools. Our framework enriches the ImageJ software libraries with methods that greatly reduce the complexity of developing image analysis tools in an interactive 3D visualization environment. In particular, we provide high-level access to volume rendering, volume editing, surface extraction, and image annotation. The ability to rely on a library that removes the low-level details enables concentrating software development efforts on the algorithm implementation parts. Conclusions Our framework enables biomedical image software development to be built with 3D visualization capabilities with very little effort. We offer the source code and convenient binary packages along with extensive documentation at http://3dviewer.neurofly.de., BMC Bioinformatics, 11, ISSN:1471-2105