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1. Additional file 8 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 8 Table S1. Spectral channel filters employed for hyperspectral autofluorescence imaging. Related to Fig. 1. For further details of this approach see Gosnell et al. [44].

2. Additional file 8 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 8 Table S1. Spectral channel filters employed for hyperspectral autofluorescence imaging. Related to Fig. 1. For further details of this approach see Gosnell et al. [44].

3. Additional file 3 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 3 Fig. S3. SWATH-MS proteomic quantification of Nicotinamide phosphoribosyltransferase. Related to Fig. 6. The figure shows the abundance profile of P43490 nicotinamide phosphoribosyltransferase (NAMPT) from the SWATH-MS proteomics quantification of the accompanying manuscript [10].

4. Additional file 10 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 10 Table S3. Unique KEGG pathways detected for TM/DM hyper and hypo-methylated gene sets. Related to Fig. 7. The identities of the 11 hypermethylated and 7 hypomethylated pathways unique to the TM/DM comparison from Fig. S7B are given. Full results are available in File S1.

5. Additional file 9 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 9 Table S2. GO pathways enrichment results. Related to Fig. 7. The top ten GO enrichments for each cell comparison from Fig. 7. Full results are available in File S1.

6. Additional file 10 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 10 Table S3. Unique KEGG pathways detected for TM/DM hyper and hypo-methylated gene sets. Related to Fig. 7. The identities of the 11 hypermethylated and 7 hypomethylated pathways unique to the TM/DM comparison from Fig. S7B are given. Full results are available in File S1.

7. Additional file 9 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 9 Table S2. GO pathways enrichment results. Related to Fig. 7. The top ten GO enrichments for each cell comparison from Fig. 7. Full results are available in File S1.

8. Additional file 4 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 4 Fig. S4. PGRMC1 phosphorylation status affects the NNMT pathway. Related to Fig. 6. (A) Metabolomics quantification of S-adenosyl-Methionine (SAM) levels for the indicated cell lines, representing n = 12 (four technical replicates for each of three independent cell lines per PGRMC1 condition). (B) RT-PCR quantification of NNMT mRNA levels after treatment by an NNMT-specific shRNA (NN) or a random scramble shRNA control (scr) in TM cells stably expressing lentiplasmid-driven shRNAs. RT-PCR Methods follow A. p

9. Additional file 3 of PGRMC1 effects on metabolism, genomic mutation and CpG methylation imply crucial roles in animal biology and disease

Author

Thejer, Bashar M., Partho P. Adhikary, Teakel, Sarah L., Fang, Johnny, Weston, Paul A., Saliya Gurusinghe, Ayad G. Anwer, Gosnell, Martin, Jazayeri, Jalal A., Ludescher, Marina, Lesley-Ann Gray, Pawlak, Michael, Wallace, Robyn H., Pant, Sameer D., Wong, Marie, Fischer, Tamas, New, Elizabeth J., Fehm, Tanja N., Neubauer, Hans, Goldys, Ewa M., Quinn, Jane C., Weston, Leslie A., and Cahill, Michael A.

Subjects
3. Good health
Abstract

Additional file 3 Fig. S3. SWATH-MS proteomic quantification of Nicotinamide phosphoribosyltransferase. Related to Fig. 6. The figure shows the abundance profile of P43490 nicotinamide phosphoribosyltransferase (NAMPT) from the SWATH-MS proteomics quantification of the accompanying manuscript [10].

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