1. FAMSi: A Synthetic Biology Approach to the Fast Assembly of Multiplex siRNAs for Silencing Gene Expression in Mammalian Cells
- Author
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Hao Wang, Na Ni, Alissa F. Li, Linjuan Huang, Jason Strelzow, Di Wu, Jing Zhang, Yixiao Feng, Kai Fu, Changchun Niu, Jiaming Fan, Eric J. Wang, Xi Wang, Qing Liu, Mostafa H. El Dafrawy, Fang He, Michael J. Lee, William Wagstaff, Zongyue Zeng, Xiaoxing Wu, Yongtao Zhang, Russell R. Reid, Meng Zhang, Mikhail Pakvasa, Xia Zhao, Huaxiu Luo, Hua Gan, Jennifer Moriatis Wolf, Benjamin Luu, Kelly Hynes, Alexander J. Li, Tong-Chuan He, Kevin H. Qin, Deyao Shi, and Yukun Mao
- Subjects
0301 basic medicine ,Small interfering RNA ,Biology ,BMP9/Smad signaling ,03 medical and health sciences ,Synthetic biology ,0302 clinical medicine ,RNA interference ,Drug Discovery ,medicine ,Gene silencing ,Multiplex ,Gene ,multiplex siRNA expression ,mesenchymal stem cells ,Mesenchymal stem cell ,lcsh:RM1-950 ,double-stranded small interfering RNA ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Therapeutics. Pharmacology ,030220 oncology & carcinogenesis ,RNAi ,siRNA ,Molecular Medicine ,Original Article ,Bone marrow ,osteoblastic differentiation - Abstract
RNA interference (RNAi) is mediated by an ∼21-nt double-stranded small interfering RNA (siRNA) and shows great promise in delineating gene functions and in developing therapeutics for human diseases. However, effective gene silencing usually requires the delivery of multiple siRNAs for a given gene, which is often technically challenging and time-consuming. In this study, by exploiting the type IIS restriction endonuclease-based synthetic biology methodology, we developed the fast assembly of multiplex siRNAs (FAMSi) system. In our proof-of-concept experiments, we demonstrated that multiple fragments containing three, four, or five siRNA sites targeting common Smad4 and/or BMPR-specific Smad1, Smad5, and Smad8 required for BMP9 signaling could be assembled efficiently. The constructed multiplex siRNAs effectively knocked down the expression of Smad4 and/or Smad1, Smad5, and Smad8 in mesenchymal stem cells (MSCs), and they inhibited all aspects of BMP9-induced osteogenic differentiation in bone marrow MSCs (BMSCs), including decreased expression of osteogenic regulators/markers, reduced osteogenic marker alkaline phosphatase (ALP) activity, and diminished in vitro matrix mineralization and in vivo ectopic bone formation. Collectively, we demonstrate that the engineered FAMSi system provides a fast-track platform for assembling multiplexed siRNAs in a single vector, and thus it may be a valuable tool to study gene functions or to develop novel siRNA-based therapeutics., Graphical Abstract, RNA interference shows great promise in delineating gene functions and in developing therapeutics for human diseases. He et al. exploited the type IIS restriction endonuclease-based synthetic biology and developed the fast assembly of multiplex siRNAs (FAMSi) system, which streamlines RNAi-based gene function studies and the development of siRNA-based therapeutics.
- Published
- 2020