1. Modeling cell-specific dynamics and regulation of the common gamma chain cytokines
- Author
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Aaron S. Meyer, Scott M. Carlson, Cori Posner, Ali M Farhat, Zoe S Kim, Brian Orcutt-Jahns, and Adam C. Weiner
- Subjects
0301 basic medicine ,Cell type ,Cell ,IL-2 mutein ,Medical Physiology ,Bioengineering ,Computational biology ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,regulatory T cells ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,medicine ,Humans ,Receptor ,Interleukin 4 ,common gamma chain cytokines ,030304 developmental biology ,Common gamma chain ,Cell specific ,0303 health sciences ,IL-7 ,Chemistry ,Inflammatory and immune system ,IL-2 ,Dynamics (mechanics) ,IL-4 ,Interleukin ,medicine.anatomical_structure ,030104 developmental biology ,IL-15 ,Interleukin 15 ,Cytokines ,Biochemistry and Cell Biology ,Cytokine receptor ,030217 neurology & neurosurgery ,Function (biology) ,030215 immunology ,Protein Binding - Abstract
SUMMARY The γ-chain receptor dimerizes with complexes of the cytokines interleukin-2 (IL-2), IL-4, IL-7, IL-9, IL-15, and IL-21 and their corresponding “private” receptors. These cytokines have existing uses and future potential as immune therapies because of their ability to regulate the abundance and function of specific immune cell populations. Here, we build a binding reaction model for the ligand-receptor interactions of common γ-chain cytokines, which includes receptor trafficking dynamics, enabling quantitative predictions of cell-type-specific response to natural and engineered cytokines. We then show that tensor factorization is a powerful tool to visualize changes in the input-output behavior of the family across time, cell types, ligands, and concentrations. These results present a more accurate model of ligand response validated across a panel of immune cell types as well as a general approach for generating interpretable guidelines for manipulation of cell-type-specific targeting of engineered ligands., Graphical Abstract, In brief Farhat et al. develop a mechanistic model of the common γ-chain receptor cytokines incorporating the structure of receptor-ligand interaction and trafficking. This model can predict the response to these cytokines, alone and in combination, and changes in binding affinity, enabling more rational cytokine engineering.
- Published
- 2021