1. Identification of QTL and loci for egg production traits to tropical climate conditions in chickens
- Author
-
Chih-Feng Chen, Michèle Tixier-Boichard, Ching-Yi Lien, Shih-Wen Wu, Changhwa Animal Propagation Station, Génétique Animale et Biologie Intégrative (GABI), Université Paris-Saclay-AgroParisTech-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), National museum of natural sciences Taichung Taiwan, National Chung Hsing University (NCHU), Ministry of Science and Technology, Taiwan NSC 99-2321-B-005-009-MY3, Ministry of Education, Taiwan, Ministry of the Science and Technology in Taiwan, and French Institute of Taipei in Taiwan
- Subjects
0301 basic medicine ,Egg production ,QTL mapping ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,Tropical climate ,Genome-wide association study ,Single-nucleotide polymorphism ,Biology ,Quantitative trait locus ,03 medical and health sciences ,SNP ,GWAS ,2. Zero hunger ,Genetics ,General Veterinary ,[SDV.BA]Life Sciences [q-bio]/Animal biology ,0402 animal and dairy science ,food and beverages ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Chicken ,SNP genotyping ,[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics ,030104 developmental biology ,Genetic marker ,[SDE]Environmental Sciences ,Trait ,Animal Science and Zoology - Abstract
International audience; Egg production is an economically critical trait in poultry industry. In order to identify genetic markers and chromosomal regions associated with egg production in tropical climate, we conducted both quantitative trait locus (QTL) mapping and genome-wide association study (GWAS) in an F2 cross set up between the Taiwan Country chicken L2 line and an INRA experimental line of Rhode Island Red layer, R-, by using the chicken 60 K SNP chip. A total of eleven QTL (3 genome-wide and 8 chromosome-wide significant QTL) and 102 single nucleotide polymorphism (SNP) effects (7 genome-wide and 95 suggestive significant SNP effects) were identified. Most of detected QTL regions (exclude a QTL on GGA23) and SNPs overlapped with previously published QTL for egg production or quality, providing the evidences to the relationship for the studied traits. The list of QTL and SNPs reported in present study could be contributed to a better comprehension of the genetic control for egg production which is useful for future functional studies.
- Published
- 2020
- Full Text
- View/download PDF