1. Impact of RNA degradation on influenza diagnosis in the surveillance system
- Author
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Peng Yang, Quanyi Wang, Qiongqiong Fang, Hejiang Wei, Li Xin, Hongyan Bai, Dayan Wang, Xiyan Li, Jiashen Zhao, and Chunyan Ma
- Subjects
0301 basic medicine ,Microbiology (medical) ,RNase P ,RNA Stability ,030106 microbiology ,Biology ,World health ,Specimen Handling ,03 medical and health sciences ,0302 clinical medicine ,Influenza A Virus, H1N1 Subtype ,Influenza, Human ,Humans ,030212 general & internal medicine ,RNA ,General Medicine ,Rna degradation ,Viral Load ,Virology ,Hospitals ,Reverse transcription polymerase chain reaction ,Sample quality ,Infectious Diseases ,RNA, Viral ,Sample collection ,Viral load ,Sentinel Surveillance - Abstract
Background The continuous evolution of influenza viruses is monitored by the World Health Organization Global Influenza Surveillance and Response System. Sample quality is essential for surveillance quality. Methods To evaluate the RNA degradation of clinical samples, influenza-like illness samples were collected from four sentinel hospitals, and seasonal influenza was tested by real-time reverse transcription polymerase chain reaction and quantified by digital reverse transcription polymerase chain reaction at different time points. Results RNA degradation was observed in the majority of samples eight days after sample collection. A significant and faster rate of RNA content reduction was observed in low viral load samples ( 10 copies/μl), stored at 2 to 8°C for up to eight days. RNase P (RNP) RNA, which is a key indicator to evaluate sample collection quality, was detected. Sample collection quality was uneven in different hospitals. Conclusion Low viral load samples increase the risk of false negatives due to RNA degradation to undetectable levels.
- Published
- 2020