1. Antimicrobial Resistance Profile and ExPEC Virulence Potential in Commensal Escherichia coli of Multiple Sources
- Author
-
Elisa Massella, C. Bacci, Lia Bardasi, Andrea Serraino, Silvia Piva, Federica Giacometti, Federica Savini, S. Rubini, Paolo Bonilauri, Cameron J. Reid, L. Fiorentini, Giuseppe Merialdi, Paola Massi, Steven P. Djordjevic, Massella, Elisa, Giacometti, Federica, Bonilauri, Paolo, Reid, Cameron J., Djordjevic, Steven P., Merialdi, Giuseppe, Bacci, Cristina, Fiorentini, Laura, Massi, Paola, Bardasi, Lia, Rubini, Silva, Savini, Federica, Serraino, Andrea, and Piva, Silvia
- Subjects
0301 basic medicine ,Microbiology (medical) ,Tetracycline ,030106 microbiology ,Virulence ,ExPEC virulence potential ,Biochemistry ,Microbiology ,commensal Escherichia coli ,03 medical and health sciences ,Antibiotic resistance ,Pathogenic Escherichia coli ,Ampicillin ,medicine ,Pharmacology (medical) ,antimicrobial resistance ,General Pharmacology, Toxicology and Pharmaceutics ,indicator organism ,biology ,resistance trends ,Sulfamethoxazole ,lcsh:RM1-950 ,quinolone resistance ,biology.organism_classification ,Antimicrobial ,Trimethoprim ,food safety ,lcsh:Therapeutics. Pharmacology ,030104 developmental biology ,Infectious Diseases ,resistance trend ,medicine.drug - Abstract
We recently described the genetic antimicrobial resistance and virulence profile of a collection of 279 commensal E. coli of food-producing animal (FPA), pet, wildlife and human origin. Phenotypic antimicrobial resistance (AMR) and the role of commensal E. coli as reservoir of extra-intestinal pathogenic Escherichia coli (ExPEC) virulence-associated genes (VAGs) or as potential ExPEC pathogens were evaluated. The most common phenotypic resistance was to tetracycline (76/279, 27.24%), sulfamethoxazole/trimethoprim (73/279, 26.16%), streptomycin and sulfisoxazole (71/279, 25.45% both) among the overall collection. Poultry and rabbit were the sources mostly associated to AMR, with a significant resistance rate (p >, 0.01) to quinolones, streptomycin, sulphonamides, tetracycline and, only for poultry, to ampicillin and chloramphenicol. Finally, rabbit was the source mostly associated to colistin resistance. Different pandemic (ST69/69*, ST95, ST131) and emerging (ST10/ST10*, ST23, ST58, ST117, ST405, ST648) ExPEC sequence types (STs) were identified among the collection, especially in poultry source. Both ST groups carried high number of ExPEC VAGs (pandemic ExPEC STs, mean = 8.92, emerging ExPEC STs, mean = 6.43) and showed phenotypic resistance to different antimicrobials (pandemic ExPEC STs, mean = 2.23, emerging ExPEC STs, mean = 2.43), suggesting their role as potential ExPEC pathogens. Variable phenotypic resistance and ExPEC VAG distribution was also observed in uncommon ExPEC lineages, suggesting commensal flora as a potential reservoir of virulence (mean = 3.80) and antimicrobial resistance (mean = 1.69) determinants.
- Published
- 2021
- Full Text
- View/download PDF