1. A genome-wide association study for the number of teats in European rabbits (Oryctolagus cuniculus) identifies several candidate genes affecting this trait
- Author
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Anisa Ribani, Luca Fontanesi, Giuseppina Schiavo, R. Negrini, Luca Buttazzoni, M. Schiavitto, Samuele Bovo, Valerio Joe Utzeri, Bovo S., Schiavo G., Utzeri V.J., Ribani A., Schiavitto M., Buttazzoni L., Negrini R., and Fontanesi L.
- Subjects
0301 basic medicine ,Genetic Markers ,livestock genomics ,Candidate gene ,Genotyping Techniques ,maternal efficiency ,NR6A1 ,Genome-wide association study ,Single-nucleotide polymorphism ,Genetic Association Studie ,Breeding ,Polymorphism, Single Nucleotide ,Fixation index ,livestock genomic ,reproduction ,03 medical and health sciences ,Mammary Glands, Animal ,single nucleotide polymorphism ,Genetic Marker ,Genetics ,biology.domesticated_animal ,SNP ,Animals ,Genetic Association Studies ,marker ,biology ,Settore AGR/17 - ZOOTECNICA GENERALE E MIGLIORAMENTO GENETICO ,Animal ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,General Medicine ,040201 dairy & animal science ,Breed ,White (mutation) ,030104 developmental biology ,Phenotype ,Animal Science and Zoology ,Female ,Rabbits ,European rabbit ,Genotyping Technique - Abstract
In the European rabbit (Oryctolagus cuniculus), a polytocous livestock species, the number of teats indirectly impacts the doe reproduction efficiency and, in turn, the sustainable production of rabbit meat. In this study, we carried out a genome-wide association study (GWAS) for the total number of teats in 247 Italian White does included in the Italian White rabbit breed selection program, by applying a selective genotyping approach. Does had either 8 (n=121) or 10 teats (n=126). All rabbits were genotyped with the Affymetrix Axiom OrcunSNP Array. Genomic data from the two extreme groups of rabbits were also analysed with the single-marker fixation index statistic and combined with the GWAS results. The GWAS identified 50 significant SNPs and the fixation index analysis identified a total of 20 SNPs that trespassed the 99.98th percentile threshold, 19 of which confirmed the GWAS results. The most significant SNP (P=4.31×10−11) was located on OCU1, close to the NUDT2 gene, a breast carcinoma cells proliferation promoter. Another significant SNP identified as candidate gene NR6A1, which is well known to play an important role in affecting the correlated number of vertebrae in pigs. Other significant markers were close to candidate genes involved in determining body length in mice. Markers associated with increased number of teats could be included in selection programmes to speed up the improvement for this trait in rabbit lines that need to increase maternal performances.
- Published
- 2021