1. Exploring use of unsupervised clustering to associate signaling profiles of GPCR ligands to clinical response
- Author
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Stephen Jenkinson, Jonathan Gallion, Darren Cawkill, Brigitte Murat, Olivier Lichtarge, Yong Ren, Michel Bouvier, Karim Nagi, Emma T van der Westhuizen, Christian Le Gouill, Besma Benredjem, Viktoryia Lukasheva, Johanie Charbonneau, Paul Dallaire, Mark Gosink, Anne W. Schmidt, Christopher Somps, Dennis J. Pelletier, and Graciela Piñeyro
- Subjects
0301 basic medicine ,Signaling profiles ,Computer science ,Science ,Guinea Pigs ,Receptors, Opioid, mu ,General Physics and Astronomy ,Computational biology ,Ligands ,Bias signaling ,General Biochemistry, Genetics and Molecular Biology ,GPCRs ,Clustering ,Article ,Receptors, G-Protein-Coupled ,Food and drug administration ,03 medical and health sciences ,0302 clinical medicine ,GTP-Binding Proteins ,Animals ,Cluster Analysis ,Humans ,Clinical responses ,Cluster analysis ,lcsh:Science ,Author Correction ,beta-Arrestins ,G protein-coupled receptor ,Pharmacology ,Multidisciplinary ,Ligand ,Effector ,General Chemistry ,3. Good health ,Computational biology and bioinformatics ,Analgesics, Opioid ,030104 developmental biology ,HEK293 Cells ,Drug screening ,Classification methods ,lcsh:Q ,Receptors, Adrenergic, beta-2 ,Signal transduction ,Unsupervised clustering ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Signaling diversity of G protein-coupled (GPCR) ligands provides novel opportunities to develop more effective, better-tolerated therapeutics. Taking advantage of these opportunities requires identifying which effectors should be specifically activated or avoided so as to promote desired clinical responses and avoid side effects. However, identifying signaling profiles that support desired clinical outcomes remains challenging. This study describes signaling diversity of mu opioid receptor (MOR) ligands in terms of logistic and operational parameters for ten different in vitro readouts. It then uses unsupervised clustering of curve parameters to: classify MOR ligands according to similarities in type and magnitude of response, associate resulting ligand categories with frequency of undesired events reported to the pharmacovigilance program of the Food and Drug Administration and associate signals to side effects. The ability of the classification method to associate specific in vitro signaling profiles to clinically relevant responses was corroborated using β2-adrenergic receptor ligands., Identifying ligands which activate the specific effectors driving particular in vivo drug effects remains challenging. Here, the authors apply unsupervised clustering of pharmacodynamic parameters to classify GPCR ligands into different categories with similar signaling profiles and shared frequency of report of side effects.
- Published
- 2019