1. RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts
- Author
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Quancan Hou, Wei W Zhao, Zhuo Yang, Kuan Li, Wenjie Wang, and Qianwen Sun
- Subjects
0106 biological sciences ,Genome instability ,Chloroplasts ,DNA, Plant ,AcademicSubjects/SCI00010 ,DNA damage ,DNA repair ,DNA polymerase ,Arabidopsis ,DNA-Directed DNA Polymerase ,Genome Integrity, Repair and Replication ,medicine.disease_cause ,01 natural sciences ,Genomic Instability ,03 medical and health sciences ,chemistry.chemical_compound ,Genetics ,medicine ,Recombinase ,030304 developmental biology ,0303 health sciences ,Mutation ,biology ,Arabidopsis Proteins ,Recombinational DNA Repair ,Cell biology ,DNA-Binding Proteins ,Rec A Recombinases ,chemistry ,RNA, Plant ,biology.protein ,Homologous recombination ,DNA ,DNA Damage ,010606 plant biology & botany - Abstract
Proper repair of damaged DNA is crucial for genetic integrity and organismal survival. As semi-autonomous organelles, plastids have their own genomes whose integrity must be preserved. Several factors have been shown to participate in plastid DNA damage repair; however, the underlying mechanism remains unclear. Here, we elucidate a mechanism of homologous recombination (HR) repair in chloroplasts that involves R-loops. We find that the recombinase RecA1 forms filaments in chloroplasts during HR repair, but aggregates as puncta when RNA:DNA hybrids accumulate. ssDNA-binding proteins WHY1/3 and chloroplast RNase H1 AtRNH1C are recruited to the same genomic sites to promote HR repair. Depletion of AtRNH1C or WHY1/3 significantly suppresses the binding of RNA polymerase to the damaged DNA, thus reducing HR repair and modulating microhomology-mediated double-strand break repair. Furthermore, we show that DNA polymerase IB works with AtRNH1C genetically to complete the DNA damage repair process. This study reveals the positive role of R-loops in facilitating the activities of WHY1/3 and RecA1, which in turn secures HR repair and organellar development.
- Published
- 2021