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5 results on '"Zhengxin Sun"'

1. Using genomic tools to inform management of the Atlantic northern fulmar

Author

Lila Colston-Nepali, Mark L. Mallory, Ryan P. Franckowiak, Zhengxin Sun, Gregory J. Robertson, Vicki L. Friesen, and Jennifer F. Provencher

Subjects
0106 biological sciences, 0301 basic medicine, education.field_of_study, biology, Range (biology), Ecology, Population, Population genetics, 15. Life on land, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, Bycatch, Reinhardtius hippoglossoides, 03 medical and health sciences, 030104 developmental biology, biology.animal, Genetic structure, Genetics, 14. Life underwater, Northern fulmar, Seabird, education, Ecology, Evolution, Behavior and Systematics
Abstract

Highly migratory species pose unique conservation and management challenges, especially when significant mortality occurs away from breeding concentrations. Population genetics and genomics may help with the appropriate management of these species by (1) determining the population genetic structure of a species across its range, and (2) allowing the assignment of individuals to their breeding source. The northern fulmar (Fulmarus glacialis; Procellariiformes: Procellariidae) is a seabird species that breeds in colonies throughout the North Atlantic and Pacific oceans. This species ranges widely across ocean basins during the non-breeding season and is exposed to a variety of threats throughout the annual cycle. The impact of mortality during the nonbreeding season on individual breeding colonies is unknown but has important ramifications for conservation and management. In this study we used restriction site-associated DNA sequencing (RADseq) to provide 6614 genome-wide single nucleotide polymorphisms (SNPs) to investigate population genetic structure of northern fulmars using 127 individuals from six breeding colonies spanning the Atlantic. Additionally, birds of unknown breeding origin were sampled from two locations: (1) offshore in the Labrador Sea, and (2) the Baffin Bay-Davis Strait region (NAFO subarea 0), as bycatch in gillnets set for Greenland halibut (Reinhardtius hippoglossoides). We found weak genetic differentiation among breeding colonies, which we suggest reflects historical associations as well as contemporary gene flow among populations. Most bycatch birds were likely from nearby breeding colonies in the eastern Canadian Arctic, but the exact breeding origins were difficult to determine due to the lack of differentiation between colonies.

Published
2020
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2. Phylogenomics reveals viral sources, transmission, and potential superinfection in early-stage COVID-19 patients in Ontario, Canada

Author

Robert I. Colautti, David Huang, Nazneen Rustom, Claudio N. Soares, Henry L. Wong, Calvin Sjaarda, T. Hugh Guan, Melissa Hudson, Gerald A Evans, Muhammad Ayub, Zhengxin Sun, Santiago Pérez-Patrigeon, and Prameet M. Sheth

Subjects
0301 basic medicine, Adult, Male, Epidemiology, Science, Basic Reproduction Number, Mutation, Missense, Evolutionary biology, Biology, Genome, Polymorphism, Single Nucleotide, Article, 03 medical and health sciences, 0302 clinical medicine, Phylogenetics, Phylogenomics, Humans, 030212 general & internal medicine, Phylogeny, Aged, Aged, 80 and over, Ontario, Multidisciplinary, Molecular epidemiology, Phylogenetic tree, SARS-CoV-2, COVID-19, Ion semiconductor sequencing, Genomics, Middle Aged, Genome evolution, 030104 developmental biology, Infectious disease (medical specialty), Viral infection, Minion, COVID-19 Nucleic Acid Testing, Spike Glycoprotein, Coronavirus, Next-generation sequencing, Medicine, Female
Abstract

The emergence and rapid global spread of SARS-CoV-2 demonstrates the importance of infectious disease surveillance, particularly during the early stages. Viral genomes can provide key insights into transmission chains and pathogenicity. Nasopharyngeal swabs were obtained from thirty-two of the first SARS-CoV-2 positive cases (March 18–30) in Kingston Ontario, Canada. Viral genomes were sequenced using Ion Torrent (n = 24) and MinION (n = 27) sequencing platforms. SARS-CoV-2 genomes carried forty-six polymorphic sites including two missense and three synonymous variants in the spike protein gene. The D614G point mutation was the predominate viral strain in our cohort (92.6%). A heterozygous variant (C9994A) was detected by both sequencing platforms but filtered by the ARTIC network bioinformatic pipeline suggesting that heterozygous variants may be underreported in the SARS-CoV-2 literature. Phylogenetic analysis with 87,738 genomes in the GISAID database identified global origins and transmission events including multiple, international introductions as well as community spread. Reported travel history validated viral introduction and transmission inferred by phylogenetic analysis. Molecular epidemiology and evolutionary phylogenetics may complement contact tracing and help reconstruct transmission chains of emerging diseases. Earlier detection and screening in this way could improve the effectiveness of regional public health interventions to limit future pandemics.

Published
2021
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3. A real-time PCR assay to accurately quantify polar bear DNA in fecal extracts

Author

Evelyn L. Jensen, Michelle P Harwood, Zhengxin Sun, Peter J. Van Coeverden de Groot, Kristen M Hayward, and Stephen C. Lougheed

Subjects
0106 biological sciences, Population genetics, lcsh:Medicine, Single-nucleotide polymorphism, Focal species, 010603 evolutionary biology, 01 natural sciences, Biochemistry, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, chemistry.chemical_compound, Genetics, Genotyping, Gene, Molecular Biology, Feces, 030304 developmental biology, 0303 health sciences, Noninvasive sampling, biology, General Neuroscience, lcsh:R, General Medicine, biology.organism_classification, Evolutionary Studies, qPCR, Real-time polymerase chain reaction, chemistry, Ursus maritimus, General Agricultural and Biological Sciences, Zoology, Bacteria, DNA
Abstract

DNA extracted from fecal samples contains DNA from the focal species, food, bacteria and pathogens. Most DNA quantification methods measure total DNA and cannot differentiate among sources. Despite the desirability of noninvasive fecal sampling for studying wildlife populations, low amounts of focal species DNA make it difficult to use for next-generation sequencing (NGS), where accurate DNA quantification is critical for normalization. Two factors are required prior to using fecal samples in NGS libraries: (1) an accurate quantification method for the amount of target DNA and (2) a determination of the relative amount of target DNA needed for successful single nucleotide polymorphism genotyping assays. Here, we address these needs by developing primers to amplify a 101 bp region of the nuclear F2 gene and a quantitative PCR (qPCR) assay that allows the accurate quantification of the amount of polar bear (Ursus maritimus) DNA in fecal extracts. We test the assay on pure polar bear DNA extracted from muscle tissue and find a high correlation between fluorometric and qPCR quantifications. The qPCR assay was also successfully used to quantify the amount of DNA derived from polar bears in fecal extractions. Orthologs of the F2 gene have been identified across vertebrates; thus, similar qPCR assays could be developed for other species to enable noninvasive studies.

Published
2020

4. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009–30 November 2009

Author

Gen-Bo Xu, Yi Kyung Kim, Zhen Xia Sha, N. Sreejayan, Maria Domenica Moccia, B. W. Hou, Fuwen Wei, Shaoying Liu, Mi Sook Min, Radosavljević Ivan, William Stewart Grant, Peter Kaňuch, Hai Hui Ye, Monika Pfunder, Stefan Woltmann, Antonis Rokas, Z. Y. Feng, Susanne Gustafsson, Benjamin N. Sacks, Hang Lee, M. L. Xie, Eun Ha Shin, Xiao Jun Xu, Kevin A. Feldheim, Scott A. Taylor, Zlatko Šatović, Maria Gaillard, Martin Lascoux, Christopher A. Saski, Ryan P. Walter, Vicki L. Friesen, Junghwa An, Shao Jing Li, Gudasalamani Ravikanth, Arnaud Béchet, William D. Templin, Juan A. Galaraza, Qingui Cai, Yi Wang, Zac Grauvogel, Åsa Berggren, Kyung Seok Kim, Sang Gyu Kim, James A. Morris-Pocock, Brian R. Kreiser, Sung Kyoung Choi, K. N. Ganeshaiah, Branka Javornik, X. Y. Ding, L. Han, Sofia Hemmilä, Julia Geraci, Daniel D. Heath, Leonardo A. Gallo, J. Zhong, Kyung i.Kl Kim, Frank Cézilly, Zhengxin Sun, Marcelle Moore, Maren A. Klich, Kumara P. Mohana, Yong Fan, F. Zhang, Zlatko Liber, Xiaolin Liao, Yong Jin Won, Athena Lam, Giovanni G. Vendramin, Alex Widmer, Xiangjiang Zhan, Sarah K. Brown, Han Chan Park, Yong Tao, Ramesh Vasudeva, Y. H. Ma, Yajun Ma, D. L. Li, Jing Wu, Kelly Lasater, George K. Roderick, Ke Jian Wang, Anna Cassel-Lundhagen, Carolina Soliani, J. Derek Hogan, Jernej Jakše, Yun Sun Lee, Ye Seul Kwan, Song-Lin Chen, Xin Hui Luo, Sean D. Schoville, Michael William Bruford, Jeffrey Robert Guyon, John G. Gibbons, Lin Lin, R. Uma Shaanker, Sang In Kim, Federico Sebastiani, W. Y. Li, Gui Zhong Wang, Rémi Wattier, Wei Cheng, Paula Marchelli, Woo-Jin Kim, BK21 program for Veterinary Science, Seoul National University [Seoul] (SNU), Centre de recherche de la Tour du Valat, Department of Ecology, Swedish University of Agricultural Sciences (SLU), Canid Diversity and Conservation Laboratory, University of California, Biodiversity and Ecological Processes Group, Cardiff University, Caopo Nature Reserves, Biogéosciences [UMR 6282] [Dijon] (BGS), Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Centre National de la Recherche Scientifique (CNRS), Key Laboratory for Sustainable Utilization of Marine Fisheries Resource, Ministry of Agriculture-Chinese Academy of Fishery Sciences, Alaska Department of Fish and Game, Jiangsu Provincal Key Laboratory for Biodiversity & Biotechnology, Nanjing Normal University (NNU), Department of Pathogen Biology and State Key Laboratory for Medical Immunology, Second Military Medical University, Pritzker Laboratory for Molecular Systematics and Evolution, The Field Museum, Department of Biology, Queen's University, Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Unidad de Genética Ecológica y Mejoramiento Forestal, INTA EEA Bariloche, School of Ecology and Conservation, University of Agricultural Sciences, Ashoka Trust for Research in Ecology and the Environment, Royal Enclave, Department of Forestry and Environmental Sciences, Department of Biological Sciences [Nashville], Vanderbilt University [Nashville], Program in Evolutionary Functional Genomics, Uppsala University, Auke Bay Laboratories (ABL), Alaska Fisheries Science Center (AFSC), NOAA National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA)-National Oceanic and Atmospheric Administration (NOAA)-NOAA National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA)-National Oceanic and Atmospheric Administration (NOAA), Great Lakes Institute for Environmental Research, University of Windsor [Ca], Centre for Plant Biotechnology and Breeding, University of Ljubljana, Biotechnology Research Division, National Fisheries Research and Development Institute, Conservation Genome Resource Bank for Korean Wildlife (CGRB), USDA, Agence Régionale de la Santé (ARS), Department of Biological Sciences, University of Southern Mississippi (USM), Division of EcoScience, EWHA Womans University (EWHA), Department of Environmental Science, Policy, and Management [Berkeley] (ESPM), University of California [Berkeley], University of California-University of California, Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, State Key Laboratory of Marine Environmental Science (MEL), Division of Botany [Zagreb], Department of Biology [Zagreb], Faculty of Science [Zagreb], University of Zagreb-University of Zagreb-Faculty of Science [Zagreb], University of Zagreb-University of Zagreb, Sichuan Academy of Forestry, College of Aqua-life Science and Technology, Shanghai Ocean University, Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET), Institute of Integrative Biology (IBZ), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Department of Crop Physiology, Biological Sciences Department [Sacrameno], California State University [Sacramento], Ecogenics GmbH, Department of Population Health and Reproduction, Genomics Institute, Clemson University, Department of Seed Science and Technology [Zagreb], Faculty of Agriculture [Zagreb] (UNIZG), Laboratorio Genexpress, Università degli Studi di Firenze = University of Florence [Firenze] (UNIFI), Department of Forest Biology and Tree Improvement, Instituto di Genetica Vegetale, Consiglio Nazionale delle Ricerche (CNR), Key Lab of Animal Ecology and Conservation Biology, Chinese Academy of Sciences [Beijing] (CAS), Department of Ecology and Evolutionary Biology, Tulane University, College of Marine Life Sciences [Qingdao], Ocean University of China (OUC), Seoul National University [Seoul], Swedish University of Agricultural Sciences, Biogéosciences [Dijon] ( BGS ), Université de Bourgogne ( UB ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Centre National de la Recherche Scientifique ( CNRS ), Nanjing Normal University, Estacion Biologica Doñana, Auke Bay Laboratories ( ABL ), Alaska Fisheries Science Center ( AFSC ), NOAA National Marine Fisheries Service ( NMFS ), National Oceanic and Atmospheric Administration ( NOAA ) -National Oceanic and Atmospheric Administration ( NOAA ) -NOAA National Marine Fisheries Service ( NMFS ), National Oceanic and Atmospheric Administration ( NOAA ) -National Oceanic and Atmospheric Administration ( NOAA ), University of Windsor, Conservation Genome Resource Bank for Korean Wildlife ( CGRB ), Agence Régionale de la Santé ( ARS ), University of Southern Mississippi, EWHA Womans University ( EWHA ), Department of Environmental Science, Policy and Management, State Key Laboratory of Marine Environmental Science, Department of Botany, University of Zagreb, Consejo Nacional de Investigaciones Científicas y Técnicas ( CONICET ), Eidgenössische Technische Hochschule [Zürich] ( ETH Zürich ), Department of Seed Science and Technology, Università degli Studi di Firenze [Firenze], Consiglio Nazionale delle Ricerche ( CNR ), Chinese Academy of Sciences [Beijing] ( CAS ), College of Marine Life Sciences, and Ocean University of China

Subjects
0106 biological sciences, Colias interior, computer.software_genre, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, food, Botany, Genetics, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, 0303 health sciences, [SDV.GEN]Life Sciences [q-bio]/Genetics, biology, Database, Salvia officinalis, biology.organism_classification, food.food, Dendrobium devonianum, Dendrobium loddigesii, Nothofagus obliqua, Sula nebouxii, Colias eurytheme, [ SDV.GEN ] Life Sciences [q-bio]/Genetics, Aspergillus clavatus, computer, Biotechnology
Abstract

5 pages; International audience; This article documents the addition of 411 microsatellite marker loci and 15 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Acanthopagrus schlegeli, Anopheles lesteri, Aspergillus clavatus, Aspergillus flavus, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Branchiostoma japonicum, Branchiostoma belcheri, Colias behrii, Coryphopterus personatus, Cynogolssus semilaevis, Cynoglossus semilaevis, Dendrobium officinale, Dendrobium officinale, Dysoxylum malabaricum, Metrioptera roeselii, Myrmeciza exsul, Ochotona thibetana, Neosartorya fischeri, Nothofagus pumilio, Onychodactylus fischeri, Phoenicopterus roseus, Salvia officinalis L., Scylla paramamosain, Silene latifo, Sula sula, and Vulpes vulpes. These loci were cross-tested on the following species: Aspergillus giganteus, Colias pelidne, Colias interior, Colias meadii, Colias eurytheme, Coryphopterus lipernes, Coryphopterus glaucofrenum, Coryphopterus eidolon, Gnatholepis thompsoni, Elacatinus evelynae, Dendrobium loddigesii Dendrobium devonianum, Dysoxylum binectariferum, Nothofagus antarctica, Nothofagus dombeyii, Nothofagus nervosa, Nothofagus obliqua, Sula nebouxii, and Sula variegata. This article also documents the addition of 39 sequencing primer pairs and 15 allele specific primers or probes for Paralithodes camtschaticus.

Published
2010
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5. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2013–31 May 2013

Author

Agostini, Cecilia, Albaladejo, R. G., Aparicio, A., Arthofer, Wolfgang, Berrebi, P., Boag, Peter T., Carbone, Ignazio, Conroy, Gabriel C., Cortesero, Anne-Marie, Goncalves, Evonnildo Costa, Costa, Diogo, Couto, Alvarina, De Girolamo, Mirko, Du, Hao, Fu, Shi-Jian, Garrido-Garduño, T., Gettova, L., Gilles, A., Hamoy, Igor Guerreiro, Herrera, C. M., Heussler, Carina, Isidro, Eduardo, Josso, Céline, Krapf, Patrick, Lamont, Robert W., Le Ralec, Anne, Lopes, Susana, Luis, Carla, Luo, Hui, Maheo, Frédérique, Marino, Ilaria A. M., Mieuzet, Lucie, Murray, Brent W., Ogbourne, Steven M., Pallavicini, Alberto, Parejo-Farnés, C., Patarnello, Tomaso, Paty, Chrystelle, Pereira, Carolina, Pinho, Catarina, Pinto, Pablo, Poinsot, Denis, Powell, Adrienne, Putman, Alexander I., Santoro, André, Santos, Sidney, Schlick-Steiner, Birgit C., Scott, Candace, Barbosa, Maria Silvanira, Simkova, A., Simon, Jean-Christophe, Solé-Cava, Antonio, Steiner, Florian M., Sun, Zhengxin, Torboli, Valentina, Tredway, Lane P., de Groot, Peter J. Van Coeverden, Vasconcellos, Anderson, Vázquez-Domínguez, E., Wang, Deng-Qiang, Wang, Yu-Xiang, Wei, Qi-Wei, Zane, Lorenzo, Zhang, Shu-Huan, Department of Biology, Universita degli Studi di Padova, Departamento Biología Vegetal y Ecología, Institute of Ecology, Molecular Ecology Group, University of Innsbruck, Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Queen's University [Kingston], Department of Plant Pathology, North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC)-University of North Carolina System (UNC), GeneCology Research Centre, University of the Sunshine Coast, Institut de Génétique, Environnement et Protection des Plantes (IGEPP), AGROCAMPUS OUEST-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National de la Recherche Agronomique (INRA), Université européenne de Bretagne - European University of Brittany (UEB), Instituto de Ciências Biológicas, Laboratório de Tecnologia Biomolecular, Federal University of Para - Universidade Federal do Para [Belem - Brésil], CIBIO/UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto [Porto], Instituto do Mar (IMAR), Department of Oceanography and Fisheries, University of the Azores, Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory of Evolutionary Physiology and Behaviour, Chongqing Key Laboratory of Animal Biology, Chongqing University, Instituto de Ecología, Departamento de Ecología de la Biodiversidad / Posgrado en Ciencias Biológicas, Universidad National Autonoma de Mexico, Faculty of Science, Department of Botany and Zoology, Masaryk University, Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS), Universidade Federal Rural da Amazônia (UFRA), Instituto de Ciências Biológicas, Laboratório de Genética Humana e Médica, Estación Biológica de Doñana, Spanish National Research Council (CSIC), Fisheries College, Huazhong Agricultural University, Natural Resources and Environmental Studies Institute, University of Northern British Columbia (UNBC), Dipartimento di Scienze della Vita, Laboratorio di Genetica, University of Trieste, Department of Comparative Biomedicine and Food Science, Instituto de Biologia, Laboratório de Biodiversidade Molecular, Universidade Federal Rural do Rio de Janeiro (UFRRJ), Instituto de Ciências Biológicas, Laboratório de Polimorfismo de DNA, Instituto de Ecología, Departamento de Ecología de la Biodiversidad, Università degli Studi di Padova = University of Padua (Unipd), Leopold Franzens Universität Innsbruck - University of Innsbruck, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Queen's University [Kingston, Canada], Institut National de la Recherche Agronomique (INRA)-Université de Rennes (UR)-AGROCAMPUS OUEST, Federal University of Para - Universidade Federal do Pará - UFPA [Belém, Brazil] (UFPA), Universidade do Porto = University of Porto, Masaryk University [Brno] (MUNI), Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Huazhong Agricultural University [Wuhan] (HZAU), University of Northern British Columbia [Prince George] (UNBC), Università degli studi di Trieste = University of Trieste, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Institut National de la Recherche Agronomique (INRA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Universidade do Porto, Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UMR237-Aix Marseille Université (AMU)-Avignon Université (AU), Cecilia, Agostini, R. G., Albaladejo, A., Aparicio, Wolfgang, Arthofer, P., Berrebi, Peter T., Boag, Ignazio, Carbone, Gabriel C., Conroy, A. M., Cortesero, Evonnildo Costa, Gonçalve, Diogo, Costa, Alvarina, Couto, MIrko De, Girolamo, Hao, Du, Shi Jian, Fu, T., Garrido Garduño, L., Gettová, A., Gille, Igor Guerreiro, Hamoy, C. M., Herrera, Carina, Heussler, Eduardo, Isidro, C., Josso, Patrick, Krapf, Robert W., Lamont, A., Le Ralec, Susana, Lope, Carla, Luí, Hui, Luo, F., Mahéo, Ilaria A. M., Marino, L., Mieuzet, Brent W., Murray, Steven M., Ogbourne, Pallavicini, Alberto, C., Parejo Farné, Tomaso, Patarnello, C., Paty, Carolina, Pereira, Catarina, Pinho, Pablo, Pinto, D., Poinsot, Adrienne, Powell, Alexander I., Putman, André, Santoro, Sidney, Santo, Birgit C., Schlick Steiner, Candace, Scott, Maria Silvanira, Barbosa, A., Šimková, J. C., Simon, Antonio Solé, Cava, Florian M., Steiner, Zhengxin, Sun, Torboli, Valentina, Lane P., Tredway, Peter J., Van Coeverden de Groot, Anderson, Vasconcello, E., Vázquez Domínguez, Deng Qiang, Wang, Yu Xiang, Wang, Qi Wei, Wei, Lorenzo, Zane, and Shu Huan, Zhang

Subjects
0106 biological sciences, 0303 health sciences, [SDV]Life Sciences [q-bio], Computational Biology, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, Databases, Genetic, micropsatellites, Genetics, Animals, Ecology, Evolution, Behavior and Systematics, Microsatellite Repeats, 030304 developmental biology, Biotechnology
Abstract

International audience; This article documents the addition of 234 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Acipenser sinensis, Aleochara bilineata, Aleochara bipustulata, Barbus meridionalis, Colossoma macropomum, Delia radicum, Drosophila nigrosparsa, Fontainea picrosperma, Helianthemum cinereum, Liomys pictus, Megabalanus azoricus, Pelteobagrus vachelli, Pleuragramma antarcticum, Podarcis hispanica type 1A, Sardinella brasiliensis and Sclerotinia homoeocarpa. These loci were cross-tested on the following species: Acipenser dabryanus, Barbus balcanicus, Barbus barbus, Barbus cyclolepis, Drosophila hydei, Drosophila melanogaster, Drosophila obscura, Drosophila subobscura, Fontainea australis, Fontainea fugax, Fontainea oraria, Fontainea rostrata, Fontainea venosa, Podarcis bocagei, Podarcis carbonelli, Podarcis liolepis, Podarcis muralis and Podarcis vaucheri.

Published
2013
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