1. Crystal Structure and Pathophysiological Role of the Pneumococcal Nucleoside-binding Protein PnrA
- Author
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Michael Lalk, Rafael Molina, Franziska Jennert, Stephanie Hirschmann, Sven Hammerschmidt, María T. Batuecas, Philipp Westhoff, Juan A. Hermoso, Franziska Voß, Thomas P. Kohler, Mohammed R. Abdullah, German Research Foundation, Federal Ministry of Education and Research (Germany), Mecklenburg-Western Pomerania, European Commission, Ministerio de Ciencia, Innovación y Universidades (España), and ALBA Synchrotron
- Subjects
Models, Molecular ,Purine ,Protein Conformation ,Physiology ,Guanosine ,Molecular Dynamics Simulation ,Crystallography, X-Ray ,Transporter ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Bacterial Proteins ,Phagocytosis ,Structural Biology ,medicine ,Animals ,Humans ,Nucleotide ,Nucleoside ,Molecular Biology ,030304 developmental biology ,Nucleoside binding ,chemistry.chemical_classification ,0303 health sciences ,Virulence ,Macrophages ,Hydrogen Bonding ,Nucleosides ,Cytidine ,Pneumonia, Pneumococcal ,Adenosine ,Uridine ,Molecular Docking Simulation ,Disease Models, Animal ,Kinetics ,Streptococcus pneumoniae ,chemistry ,Biochemistry ,Crystal structures ,ATP-Binding Cassette Transporters ,Pneumococci ,030217 neurology & neurosurgery ,Protein Binding ,medicine.drug - Abstract
19 pags., 7 figs., Nucleotides are important for RNA and DNA synthesis and, despite a de novo synthesis by bacteria, uptake systems are crucial. Streptococcus pneumoniae, a facultative human pathogen, produces a surface-exposed nucleoside-binding protein, PnrA, as part of an ABC transporter system. Here we demonstrate the binding affinity of PnrA to nucleosides adenosine, guanosine, cytidine, thymidine and uridine by microscale thermophoresis and indicate the consumption of adenosine and guanosine by H NMR spectroscopy. In a series of five crystal structures we revealed the PnrA structure and provide insights into how PnrA can bind purine and pyrimidine ribonucleosides but with preference for purine ribonucleosides. Crystal structures of PnrA:nucleoside complexes unveil a clear pattern of interactions in which both the N- and C- domains of PnrA contribute. The ribose moiety is strongly recognized through a conserved network of H-bond interactions, while plasticity in loop 27–36 is essential to bind purine- or pyrimidine-based nucleosides. Further, we deciphered the role of PnrA in pneumococcal fitness in infection experiments. Phagocytosis experiments did not show a clear difference in phagocytosis between PnrA-deficient and wild-type pneumococci. In the acute pneumonia infection model the deficiency of PnrA attenuated moderately virulence of the mutant, which is indicated by a delay in the development of severe lung infections. Importantly, we confirmed the loss of fitness in co-infections, where the wild-type out-competed the pnrA-mutant. In conclusion, we present the PnrA structure in complex with individual nucleosides and show that the consumption of adenosine and guanosine under infection conditions is required for virulence., This work was supported by grants from the Deutsche Forschungsgemeinschaft DFG GRK1870 (to SH and ML), the Bundesministerium fu ̈rBildung und Forschung (BMBF) - Zwanzig20 -InfectControl 2020 - project VacoME - FKZ03ZZ0816A to SH, the Federal Excellence Initiative of Mecklenburg Western Pomerania and European Social Fund (ESF) Grant KoInfekt(ESF_14-BM-A55-0001_16) to SH and byfinancial support from the Spanish Ministry of Science, Innovation and Universities BFU2017-90030-P to JAH. We thankfully acknowledge thetechnical support provided by staff of thebeamline XALOC at the ALBA synchrotron facility(Barcelona, Spain) and Teresia Hallstro ̈m (NanoTemper, Munich, Germany).
- Published
- 2020