1. Precision Tracing of Household Dengue Spread Using Inter- and Intra-Host Viral Variation Data, Kamphaeng Phet, Thailand
- Author
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Butsaya Thaisomboonsuk, Tao Li, Melanie C. Melendrez, Katherine Figueroa, Richard G. Jarman, Chonticha Klungthong, Simon Pollett, Michael Panciera, Louis R. Macareo, Stephen J. Thomas, Ananda Nisalak, Timothy P. Endy, Darunee Buddhari, Irina Maljkovic Berry, In-Kyu Yoon, and Tyghe Vallard
- Subjects
Microbiology (medical) ,Epidemiology ,vector-borne infections ,030231 tropical medicine ,Infectious and parasitic diseases ,RC109-216 ,Variation (game tree) ,Tracing ,Biology ,Disease cluster ,Dengue fever ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,inter-host variants ,law ,medicine ,Humans ,viruses ,Prospective Studies ,030212 general & internal medicine ,Family Characteristics ,mosquitoborne diseases ,transmission chains ,Research ,Spatial epidemiology ,Dengue Virus ,Thailand ,Precision Tracing of Household Dengue Spread Using Inter- and Intra-Host Viral Variation Data, Kamphaeng Phet, Thailand ,medicine.disease ,dengue ,Infectious Diseases ,Transmission (mechanics) ,Kamphaeng Phet ,arboviruses ,intra-host variants ,Medicine ,Viral spread ,Cartography - Abstract
Dengue control approaches are best informed by granular spatial epidemiology of these viruses, yet reconstruction of inter- and intra-household transmissions is limited when analyzing case count, serologic, or genomic consensus sequence data. To determine viral spread on a finer spatial scale, we extended phylogenomic discrete trait analyses to reconstructions of house-to-house transmissions within a prospective cluster study in Kamphaeng Phet, Thailand. For additional resolution and transmission confirmation, we mapped dengue intra-host single nucleotide variants on the taxa of these time-scaled phylogenies. This approach confirmed 19 household transmissions and revealed that dengue disperses an average of 70 m per day between households in these communities. We describe an evolutionary biology framework for the resolution of dengue transmissions that cannot be differentiated based on epidemiologic and consensus genome data alone. This framework can be used as a public health tool to inform control approaches and enable precise tracing of dengue transmissions.
- Published
- 2021
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