Search

Sexual dimorphism of fish morphology, physiology and behavior is diverse and complex in nature. Doublesex and mab-3 related transcription factor (Dmrt) is a large protein family whose function is s...

Although feed cost is the greatest concern in aquaculture, the inclusion of carbohydrates in the fish diet, and their assimilation, are still not well understood in aquaculture species. We identified molecular events that occur due to the inclusion of high carbohydrate levels in the diets of genetically improved &lsquo, Jayanti rohu&rsquo, Labeo rohita. To reveal transcriptional changes in the liver of rohu, a feeding experiment was conducted with three doses of gelatinized starch (20% (control), 40%, and 60%). Transcriptome sequencing revealed totals of 15,232 (4464 up- and 4343 down-regulated) and 15,360 (4478 up- and 4171 down-regulated) differentially expressed genes. Up-regulated transcripts associated with glucose metabolisms, such as hexokinase, PHK, glycogen synthase and PGK, were found in fish fed diets with high starch levels. Interestingly, a de novo lipogenesis mechanism was found to be enriched in the livers of treated fish due to up-regulated transcripts such as FAS, ACC&alpha, and PPAR&gamma, The insulin signaling pathways with enriched PPAR and mTOR were identified by Kyoto Encyclopedia of Genes and Genome (KEGG) as a result of high carbohydrates. This work revealed for the first time the atypical regulation transcripts associated with glucose metabolism and lipogenesis in the livers of Jayanti rohu due to the inclusion of high carbohydrate levels in the diet. This study also encourages the exploration of early nutritional programming for enhancing glucose efficiency in carp species, for sustainable and cost-effective aquaculture production.

MicroRNAs (miRNAs) are an abundant class of newly identified endogenous small non-coding RNAs of ~22 nucleotides long molecules. They play a vital role in many biological and physiological processes of both plants and animals. The conserved nature of miRNAs provides functional role in mostly post-transcriptional regulation, gene expression and silencing the target genes. The theory based on approach of finding homologous sequences of known miRNAs both within a single genome and across genomes of related organisms. In this study, an attempt was made to identify potential miRNAs in Eclipta prostrata GSSs sequence through computational means. A total of 84 GSS sequences of E.prostrata were assembled and resulted in 7 contigs and 28 singletons, homology searched against the non-redundant 4802 known mature miRNAs of Viridiplantae plant kingdom resulted in identification of 8 potential miRNA candidates belonging to 7 different miRNA families. A majority of conserved miRNAs have been characterized by computational approaches using psTargetServer resulted in 5 potential target genes. The result concluded by obtaining eight potential miRNAs of E.prostrata that is evolved functional annotation and evolutionary relationship with other species.

The liver is an important central organ, which controls carbohydrate metabolism through maintaining glucose homeostasis by a tightly regulated system of genes or enzymes. The microRNAs are small non-coding RNAs playing an important role in the regulation of genes associated with developmental biology, physiology, metabolism, etc. Thus, in this study, we have intended to detect liver-specific microRNAs in farmed carp, Labeo bata, upon being fed a diet with different levels of carbohydrates. Here, we have conducted the experiment for 45 days using fingerlings of farmed carp fed with 20% (control), 40%, and 60% gelatinized starch levels. The liver tissues were collected from each treatment and processed for RNA isolation, small RNA library preparation, and high-throughput sequencing using Illumina NexSeq500. Through sequencing, 15,779,417 reads in 20% CHO, 13,959,039 in 40% CHO, and 13,661,950 in 60% CHO reads were generated for control and treated fishes using three small RNA libraries. We have investigated 445 novel and 231 conserved microRNAs in 20%, 40%, and 60% carbohydrate (CHO), respectively, through computational analysis. The differential expression analysis of miRNAs was carried out between different treatments compared with control and this study depicted 117 known and 114 novel miRNA genes involved in carbohydrate metabolic pathways. Further, target prediction and gene ontology analysis revealed that miRNAs were involved in several pathways such as signaling pathway, G protein pathway, complement receptor–mediated pathway, dopamine receptor signaling pathway, epidermal growth factor pathway, and notch signaling pathway. The predicted miRNA sites in targeted genes were associated with cellular activities, developmental biology, DNA binding, Golgi apparatus, extracellular region, catalytic activity, MAPK cascade, etc. Overall, we have generated a vital resource of liver-specific miRNAs involved in metabolic gene regulation. These studies further will help develop miRNA inhibitors to study their role during carbohydrate metabolism in farmed carp.

The role of microRNA in gene regulation during developmental biology has been well depicted in several organisms. The present study was performed to investigate miRNAs role in the liver tissues during carbohydrate metabolism and their targets in the farmed carp rohu, Labeo rohita, which is economically important species in aquaculture. Using Illumina-HiSeq technology, a total of 22,612,316; 44,316,046 and 13,338,434 clean reads were obtained from three small-RNA libraries. We have identified 138 conserved and 161 novel miRNAs and studies revealed that miR-22, miR-122, miR-365, miR-200, and miR-146 are involved in carbohydrate metabolism. Further analysis depicted mature miRNA and their predicted target sites in genes that were involved in developmental biology, cellular activities, transportation, etc. This is the first report of the presence of miRNAs in liver tissue of rohu and their comparative profile linked with metabolism serves as a vital resource as a biomarker.

The Clitoriaternatea medicinal plant deserves multipotent bioactive secondary metabolites potentials in a great deal. The aim of this study is to analyze the phytochemical, biochemical and antimicrobial activities of the different plant extracts. Extracts from the leaves and seed of Clitoriaternatea were extracted with water and methanol. Phytochemical analysis observed the presence of flavonoids, Carbohydrates, phenols, saponins, tannins, quinines, terpenoids and oxalate components in leaves and seed extract of methanol. In seeds aqueous and methanol extracts, alkaloids, carbohydrates, glycosides, flavonoids, tannins, saponins, amino acids, proteins, terpenoids were present. Quantitatively, seed and leaves methanol extract have good quantity of phenol, carbohydrates, tannin, flavonoid and terpenoid. Two bacterial and fungal strains were taken for antimicrobial analysis. The antibacterial study against E.coli and B.subtlis, result in the zone of inhibition which was more in case of methanol extracts. In antifungal analysis, the extracts were showed equally effective against A.niger whereas the seeds methanol extracts were little more effective against in case of P.chrysogenum. Hence, C. ternatea can be used to discover bioactive natural products that may serve as a base in the development of new natural plant-based medicine.