8 results on '"Kenneth Squire"'
Search Results
2. Photonic crystal-enhanced fluorescence imaging immunoassay for cardiovascular disease biomarker screening with machine learning analysis
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Kundan Sivashanmugan, Joseph A. Kraai, Alan X. Wang, Ailing Tan, Kenneth Squire, Gregory L. Rorrer, and Yong Zhao
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Analyte ,Fluorescence-lifetime imaging microscopy ,Computer science ,02 engineering and technology ,010402 general chemistry ,Machine learning ,computer.software_genre ,01 natural sciences ,Article ,Partial least squares regression ,Materials Chemistry ,medicine ,Electrical and Electronic Engineering ,Instrumentation ,Photonic crystal ,medicine.diagnostic_test ,business.industry ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,3. Good health ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Immunoassay ,Principal component analysis ,Artificial intelligence ,Spatial frequency ,0210 nano-technology ,business ,Biosensor ,computer - Abstract
When myocardial walls experience stress due to cardiovascular diseases, like heart failure, hormone N-terminal pro-B-type natriuretic peptide (NT-proBNP) is secreted into the blood. Early detection of NT-proBNP can assist diagnosis of heart failure and enable early medical intervention. A simple, cost-effective detection technique such as the widely used fluorescence imaging immunoassay is yet to be developed to detect clinically relevant levels of NT-proBNP. In this work, we demonstrate photonic crystal-enhanced fluorescence imaging immunoassay using diatom biosilica, which is capable of detecting low levels of NT-proBNP in solution with the concentration range of 0˜100 pg/mL. By analyzing the fluorescence images in the spatial and spatial frequency domain with principle component analysis (PCA) and partial least squares regression (PLSR) algorithms, we create a predictive model that achieves great linearity with a validation R2 value of 0.86 and a predictive root mean square error of 14.47, allowing for good analyte quantification. To demonstrate the potential of the fluorescence immunoassay biosensor for clinical usage, we conducted qualitative screening of high and low concentrations of NT-proBNP in human plasma. A more advanced machine learning algorithm, the support vector machine classification, was paired with the PCA and trained by 160 fluorescence images. In the 40 testing images, we achieved excellent specificity of 93%, as well as decent accuracy and sensitivity of 78% and 65% respectively. Therefore, the photonic crystal-enhanced fluorescence imaging immunoassay reported in this article is feasible to screen clinically relevant levels of NT-proBNP in body fluid and evaluate the risk of heart failure.
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- 2019
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3. Trace Detection of Tetrahydrocannabinol in Body Fluid via Surface-Enhanced Raman Scattering and Principal Component Analysis
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Joseph A. Kraai, Kundan Sivashanmugan, Kenneth Squire, Yong Zhao, Gregory L. Rorrer, Alan X. Wang, and Ailing Tan
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Saliva ,Silver ,Metal Nanoparticles ,Bioengineering ,02 engineering and technology ,Spectrum Analysis, Raman ,01 natural sciences ,Silver nanoparticle ,Limit of Detection ,mental disorders ,medicine ,Humans ,Dronabinol ,Tetrahydrocannabinol ,Instrumentation ,Diatoms ,Fluid Flow and Transfer Processes ,Body fluid ,Principal Component Analysis ,Reproducibility ,Chromatography ,Illicit Drugs ,Chemistry ,Methanol ,organic chemicals ,Process Chemistry and Technology ,010401 analytical chemistry ,Reproducibility of Results ,Substrate (chemistry) ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Principal component analysis ,Regression Analysis ,0210 nano-technology ,Quantitative analysis (chemistry) ,medicine.drug - Abstract
Tetrahydrocannabinol (THC) is the main active component in marijuana and the rapid detection of THC in human body fluid plays a critical role in forensic analysis and public health. Surface-enhanced Raman scattering (SERS) sensing has been increasingly used to detect illicit drugs; however, only limited SERS sensing results of THC in methanol solution have been reported, while its presence in body fluids, such as saliva or plasma, has yet to be investigated. In this article, we demonstrate the trace detection of THC in human plasma and saliva solution using a SERS-active substrate formed by in situ growth of silver nanoparticles (Ag NPs) on diatom frustules. THC at extremely low concentration of 1 pM in plasma and purified saliva solutions were adequately distinguished with good reproducibility. The SERS peak at 1603 cm-1 with standard deviation of 3.4 cm-1 was used for the evaluation of THC concentration in a methanol solution. Our SERS measurement also shows that this signature peak experiences a noticeable wavenumber shift and a slightly wider variation in the plasma and saliva solution. Additionally, we observed that THC in plasma or saliva samples produces a strong SERS peak at 1621 cm-1 due to the stretching mode of O-C═O, which is related to the metabolic change of THC structures in body fluid. To conduct a quantitative analysis, principal component analysis (PCA) was applied to analyze the SERS spectra of 1 pM THC in methanol solution, plasma, and purified saliva samples. The maximum variability of the first three principal components was achieved at 71%, which clearly denotes the impact of different biological background signals. Similarly, the SERS spectra of THC in raw saliva solution under various metabolic times were studied using PCA and 98% of the variability is accounted for in the first three principal components. The clear separation of samples measured at different THC resident times can provide time-dependent information on the THC metabolic process in body fluids. A linear regression model was used to estimate the metabolic rate of THC in raw saliva and the predicted metabolic time in the testing data set matched well with the training data set. In summary, the hybrid plasmonic-biosilica SERS substrate can achieve ultrasensitive, near-quantitative detection of trace levels of THC in complex body fluids, which can potentially transform forensic sensing techniques to detect marijuana abuse.
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- 2019
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4. Biological Photonic Crystal-Enhanced Plasmonic Mesocapsules: Approaching Single-Molecule Optofluidic-SERS Sensing
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Gregory L. Rorrer, Kundan Sivashanmugan, Alan X. Wang, Joseph A. Kraai, Ailing Tan, Yong Zhao, and Kenneth Squire
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Materials science ,Microfluidics ,Nanotechnology ,02 engineering and technology ,Optical field ,010402 general chemistry ,01 natural sciences ,Silver nanoparticle ,Article ,Rhodamine 6G ,chemistry.chemical_compound ,symbols.namesake ,Plasmon ,Photonic crystal ,business.industry ,021001 nanoscience & nanotechnology ,Atomic and Molecular Physics, and Optics ,3. Good health ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,chemistry ,symbols ,Photonics ,0210 nano-technology ,business ,Raman scattering - Abstract
Surface-enhanced Raman scattering (SERS) sensing in microfluidic devices, namely optofluidic-SERS, suffers an intrinsic trade-off between mass transport and hot spot density, both of which are required for ultra-sensitive detection. To overcome this compromise, photonic crystal-enhanced plasmonic mesocapsules are synthesized, utilizing diatom biosilica decorated with in-situ growth silver nanoparticles (Ag NPs). In our optofluidic-SERS testing, 100× higher enhancement factors and greater than 1,000× better detection limit were achieved compared with traditional colloidal Ag NPs, the improvement of which is attributed to unique properties of the mesocapsules. First, the porous diatom biosilica frustules serve as carrier capsules for high density Ag NPs that form high density plasmonic hot-spots. Second, the submicron-pores embedded in the frustule walls not only create a large surface-to-volume ratio allowing for effective analyte capture, but also enhance the local optical field through the photonic crystal effect. Last, the mesocapsules provide effective mixing with analytes as they are flowing inside the microfluidic channel. The reported mesocapsules achieved single molecule detection of Rhodamine 6G in microfluidic devices and were further utilized to detect 1 nM of benzene and chlorobenzene compounds in tap water with near real-time response, which successfully overcomes the constraint of traditional optofluidic sensing.
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- 2020
5. Continuous Synthesis of Monodisperse Ag Nanocubes
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Kenneth Squire, Gustavo H. Albuquerque, Alan X. Wang, and Gregory S. Herman
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chemistry.chemical_classification ,Materials science ,Sulfide ,Continuous flow ,Dispersity ,Nucleation ,02 engineering and technology ,General Chemistry ,Edge (geometry) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,chemistry ,Chemical engineering ,Transmission electron microscopy ,General Materials Science ,Particle size ,0210 nano-technology ,Microwave - Abstract
The precise control of both the size and shape of Ag nanoparticles strongly influences their optical properties. Although the synthesis of Ag nanocubes with sharp corners and edges has been demonstrated, the ability to scale these approaches with high selectivity remains elusive. In this study, a continuous flow microwave-assisted reactor was used to separate nucleation from growth events, which provides a method to synthesize very uniform single crystalline Ag nanocubes. Nucleation in the microwave zone was enhanced through seed-mediated processes by sulfide formation, and a chemical regulator was used in the growth zone to further improve the sharpness of the edges of the nanocubes. Transmission electron microscopy and optical properties were used to optimize the reaction conditions and Ag nanocubes with edge lengths of 28 and 45 nm were readily synthesized with narrow particle size distributions and high selectivities (>70%). Nanocubes with 28 nm edge lengths were used to prepare films to demonstrate t...
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- 2017
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6. Photonic crystal enhanced fluorescence immunoassay on diatom biosilica
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Gregory L. Rorrer, Alan X. Wang, Xianming Kong, Kenneth Squire, and Paul LeDuff
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Fluorescence-lifetime imaging microscopy ,Materials science ,General Physics and Astronomy ,Biosensing Techniques ,02 engineering and technology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Fluorescence spectroscopy ,Microscopy ,General Materials Science ,Photonic crystal ,Diatoms ,Immunoassay ,Detection limit ,Photons ,business.industry ,Optical Imaging ,010401 analytical chemistry ,General Engineering ,General Chemistry ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,Fluorescence ,Nanostructures ,0104 chemical sciences ,Spectrometry, Fluorescence ,Optoelectronics ,Photonics ,0210 nano-technology ,business ,Biosensor - Abstract
Fluorescence biosensing is one of the most established biosensing methods, particularly fluorescence spectroscopy and microscopy. These are two highly sensitive techniques but require high-grade electronics and optics to achieve the desired sensitivity. Efforts have been made to implement these methods using consumer grade electronics and simple optical setups for applications such as point-of-care diagnostics, but the sensitivity inherently suffers. Sensing substrates, capable of enhancing fluorescence are thus needed to achieve high sensitivity for such applications. In this paper, we demonstrate a photonic crystal-enhanced fluorescence immunoassay biosensor using diatom biosilica, which consists of silica frustules with sub-100 nm periodic pores. Utilizing the enhanced local optical field, the Purcell effect and increased surface area from the diatom photonic crystals, we create ultrasensitive immunoassay biosensors that can significantly enhance fluorescence spectroscopy as well as fluorescence imaging. Using standard antibody-antigen-labeled antibody immunoassay protocol, we experimentally achieved 100× and 10× better detection limit with fluorescence spectroscopy and fluorescence imaging respectively. The limit of detection of the mouse IgG goes down to 10-16 M (14 fg/mL) and 10-15 M (140 fg/mL) for the two respective detection modalities, virtually sensing a single mouse IgG molecule on each diatom frustule. The effectively enhanced fluorescence imaging in conjunction with the simple hot-spot counting analysis method used in this paper proves the great potential of diatom fluorescence immunoassay for point-of-care biosensing.
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- 2018
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7. On-chip near-infrared spectroscopy of CO2 using high resolution plasmonic filter array
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Xinyuan Chong, Alan X. Wang, Erwen Li, and Kenneth Squire
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Materials science ,Physics and Astronomy (miscellaneous) ,business.industry ,Near-infrared spectroscopy ,Physics::Optics ,Infrared spectroscopy ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Waveguide (optics) ,010309 optics ,Optics ,Filter (video) ,0103 physical sciences ,Optoelectronics ,0210 nano-technology ,Optical filter ,Spectroscopy ,business ,Diffraction grating ,Plasmon - Abstract
We report an ultra-compact, cost-effective on-chip near-infrared spectroscopy system for CO2 sensing using narrow-band optical filter array based on plasmonic gratings with a waveguide layer. By varying the periodicity of the gratings, the transmission spectra of the filters can be continuously tuned to cover the 2.0 μm sensing window with high spectral resolution around 10 nm. Our experimental results show that the on-chip spectroscopy system can resolve the two symmetric vibrational bands of CO2 at 2.0 μm wavelength, which proves its potential to replace the expensive commercial IR spectroscopy system for on-site gas sensing.
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- 2016
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8. Hybrid Photonic Crystal-Plasmonic Lab-on-Chip Device using TLC-SERS for Multiple Chemical Sensing
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Alan X. Wang, Kenneth Squire, Boxin Zhang, and Kundan Sivashanmugan
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Coupling ,Materials science ,business.industry ,technology, industry, and agriculture ,Physics::Optics ,02 engineering and technology ,Lab-on-a-chip ,Surface-enhanced Raman spectroscopy ,021001 nanoscience & nanotechnology ,01 natural sciences ,law.invention ,010309 optics ,symbols.namesake ,law ,0103 physical sciences ,symbols ,Optoelectronics ,Physics::Chemical Physics ,Photonics ,0210 nano-technology ,Raman spectroscopy ,business ,Plasmon ,Photonic crystal - Abstract
By coupling surface-enhanced Raman spectroscopy (SERS) with thin-layer chromatography, hybrid photonic crystal- plasmonic devices provide lab-on-a-chip functionalities for separating and detecting multiple chemical targets in a complex solution.
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