1. Chemical Reactions-Based Detection Mechanism for Molecular Communications
- Author
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Vahid Jamali, Robert Schober, Nikola Zlatanov, Jamie Evans, Wayan Wicke, Trang Ngoc Cao, and Phee Lep Yeoh
- Subjects
FOS: Computer and information sciences ,Cell signaling ,Discretization ,010405 organic chemistry ,Iterative method ,Computer science ,Computer Networks and Communications ,Information Theory (cs.IT) ,Computer Science - Information Theory ,Detector ,Bioengineering ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Chemical reaction ,0104 chemical sciences ,Interference (communication) ,Product (mathematics) ,Modeling and Simulation ,Molecule ,Electrical and Electronic Engineering ,0210 nano-technology ,Biological system ,Molecular probe ,Biotechnology - Abstract
In molecular communications, the direct detection of signaling molecules may be challenging due to a lack of suitable sensors and interference in the environment. Motivated by research in molecular biology, we investigate an indirect detection mechanism using chemical reactions between the signaling molecules and a molecular probe to produce an easy-to-measure product at the receiver. We consider two implementations of the proposed detection mechanism, i.e., unrestricted probe movement and probes restricted to a volume around the receiver. The reaction-diffusion equations describing the concentrations of the reactant and product molecules in the system are non-linear and coupled, and cannot be solved in closed form. Therefore, we develop an efficient iterative algorithm by discretizing the time variable and solving for the space variables of the equations in each time step. Our results show that the concentrations of the product molecules and the signalling molecules share a similar characteristic over time, i.e., a single peak and a long tail. The peak and tail values of the product molecule concentration can be controlled by choosing probes with suitable parameters. By carefully choosing the molecular probe and optimizing the decision threshold, the BER can be improved significantly and outperform that of a direct detection system., 13 pages, 11 figures, 1 table. This journal version was submitted in April 2022 to the IEEE for possible publication. A part of this article was presented at the IEEE Wireless Communications and Networking Conference 2020 and stored in the previous version on arXiv
- Published
- 2023