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Twenty three fungal endophytes isolated from desi cotton (Gossypium arboreum) were evaluated against two important pathogens of cotton Corynespora cassiicola and Fusarium solani, causal agents of leaf spot and seedling rot respectively. The internal transcribed spacer (ITS) region analysis was used for species-level identification of the fungal endophytes, wherein Curvularia (11) genus followed by Nigrospora (4) was found dominant whereas, Alternaria sp. (2) and Setosphaeria rostrata (2) were other prominent endophytes. Two isolates of Nigrospora sphaerica (CEL 5 and CEL 19) were highly efficient against C. cassiicola and inhibited mycelial growth up to 49.38% and 46.30%, respectively, whereas another isolate of N. oryzae (CEL 2) was effective against F. solani with inhibition of 43.06%. Besides, N. sphaerica (CEL 19) was found to influence the growth of test pathogens when tested for antibiosis. Through GC/ MS analysis of CEL 19 isolate, four major antimicrobial volatile organic compounds (VOCs), namely 1, 3‑diethyl benzene, 1, 4-diehtyl benzene, m-Ethylacetophenone, and p-cymene-7-ol were identified. The phylogeny tree constructed based on ITS sequences revealed two major branches and the first major branch consisted of most of the isolated fungal endophytes, whereas the second major branch consisted of only Coprinopsis cinerea and Puccinia chunjii. The 23 isolates divided into Ascomycota and Basidiomycota phyla were represented by four classes; Agaricomycetes, Eurotiomycetes, Sordariomycetes and Dothidiomycetes which were distributed into six orders. The majority of endophytes belonged to class Dothidiomycetes, followed by Sordariomycetes. There was no much difference observed between the endophytes and the reference taxa, even though it was a pathogen, indicating that pathogenicity of an organism is always not correlated with its gene sequence. Our findings suggest that N. sphaerica could be used as a potential biocontrol agent and its VOCs also have a role in suppressing the growth of plant pathogens.

Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) is a serious pest of cotton that inflicts huge economic losses. Excessive use of chemical pesticides for its management causes environmental pollution and pesticide resistance. Six bioassay methods and ten entomopathogenic fungal strains (EPFs) were evaluated to find out the suitable bioassay method and the most virulent strain(s) for management of B. tabaci under laboratory and polyhouse conditions. The highest tenderness and survival period (> 30 days) of the leaves and increasing trend in nymphal mortality was recorded in a new modified polyhouse bioassay method (NMPBM). NMPBM was found to be effective, simpler, and less labor intensive for evaluating large numbers of EPF strains. Twelve newly isolated EPF strains were characterized based on their morphological and molecular characteristics. The highest whitefly nymphal mortality (at 107 conidia ml−1) was recorded by Beauveria bassiana (Bb)-4511 (95.1%), Bb-4565 (89.9%), and Metarhizium anisopliae-1299 (86.7%) at the seventh day post inoculation. However, the overall bioefficacy index was higher in Bb-4511 (78.1%), Cordyceps javanica (Cj)-102 (77.0%), and Cj-089 (75.4%) than other EPF strains. The lowest values of LC50 and LC90 were with Cj-089 and Bb-4511. The field deployment of effective formulation of these most virulent EPF strains might be helpful for managing B. tabaci populations and CLCuD incidence under insecticide resistance management programs.

Cotton leaf curl disease (CLCuD), caused by whitefly (Bemisiatabaci) transmitted single-stranded DNA viruses belonging to the Genus, Begomovirus (family, Geminiviridae) in association with satellite molecules; is responsible for major economic losses in cotton in three northwest (NW) Indian states Haryana, Punjab, and Rajasthan. Annual CLCuD incidences during 2012 to 2014 were estimated to be 37.5%, 63.6%, and 38.8% respectively. Cotton leaves were collected from symptomatic plants annually for three years and subjected to DNA isolation, followed by rolling circle amplification (RCA), cloning, and DNA sequencing of apparently full-length begomoviral genomes and associated betasatellites and alphasatellites. Among the thirteen CLCuD-begomoviral genomes recovered, eight were identified as Cotton leaf curl Multan virus-Rajasthan (CLCuMuV-Ra), one as -Pakistan (PK) and another as -Faisalabad (Fai), whereas, three were as Cotton leaf curl Kokhran virus-Burewala (CLCuKoV-Bu), indicating that CLCuMuV-Ra was the most prevalent begomovirus species. Five of the eight CLCuMuV-Ra sequences were found to be recombinants. The CLCuMuV-Ra- associated satellites consisted of Cotton leaf curl Multan betasatellite (CLCuMB), and Gossypium darwinii symptomless alphasatellite (GDarSLA), and Croton yellow vein mosaic alphasatellite (CrYVMoA). The second most abundant helper virus species, CLCuKoV-Bu, was associated with CLCuMB and GDarSLA.