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Focused Identification of Germplasm Strategy (FIGS) has been advocated as an efficient approach to predict and harness variation in adaptive traits in genebanks or wild populations of plants. However, a weakness of the current FIGS approach is that it only utilizes a priori knowledge of one evolutionary factor: natural selection. Further optimization is needed to capture elusive traits, and this review shows that nonadaptive evolutionary processes (gene flow and genetic drift) should be incorporated to increase precision. Focusing on plant resistance to insect herbivores, we also note that historic selection pressures can be difficult to disentangle, and provide suggestions for successful mining based on eco-evolutionary theory. We conclude that with such refinement FIGS has high potential for enhancing breeding efforts and hence sustainable plant production.

Adoption, the act of taking another individual’s offspring and treating it as one’s own, is rare but widely observed in various mammal species and may increase the survival of adoptees. Adoption may also benefit adoptive mothers, for example they might care for close kin to gain indirect fitness or to learn caregiving behaviours. Here, we report two cases of a wild bonobo adopting an infant from a different social group, the first report of cross-group adoption in great apes. In one case, the adoptive mother was already a mother of two dependent offspring. In the other case, the adoptive mother was an old parous female whose own offspring had already emigrated into a different social group. The adoptive mothers provided various maternal care to the adoptees, such as carrying, grooming, nursing, and sharing food. No aggression was observed by group members towards the out-group adoptees. In both cases, adoptees had no maternal kin-relationship with their adoptive mothers. Both adoptive mothers already had experience of rearing their own offspring. Instead, these cases of adoption may have been driven by other evolutionary adaptive traits of bonobos, such as their strong attraction to infants and high tolerance towards immatures and out-group individuals., 野生ボノボが他集団の子どもを「養子」とした2事例を報告. 京都大学プレスリリース. 2021-03-19.

Although macroecology is a well-established field, much remains to be learned about the large-scale variation of fungal traits. We conducted a global analysis of mean fruit body size of 59 geographical regions worldwide, comprising 5340 fungal species exploring the response of fruit body size to latitude, resource availability and temperature. The results showed a hump-shaped relationship between mean fruit body size and distance to the equator. Areas with large fruit bodies were characterised by a high seasonality and an intermediate mean temperature. The responses of mutualistic species and saprotrophs were similar. These findings support the resource availability hypothesis, predicting large fruit bodies due to a seasonal resource surplus, and the thermoregulation hypothesis, according to which small fruit bodies offer a strategy to avoid heat and cold stress and therefore occur at temperature extremes. Fruit body size may thus be an adaptive trait driving the large-scale distribution of fungal species.

Adaptative traits enable organisms to survive and reproduce. Though these traits are often innate features (ones that may or may not exhibit variability in response to environmental cues or originate from horizontal gene transfer), this is not always the case. Many species endure natural selection not with the traits they possess intrinsically but with exogenous substances and abilities that they acquire from other species, via ecological interactions akin to outsourcing, pillaging, and fraud. Here, I review the mechanisms of this exogenous trait acquisition and highlight some of their repercussions and usefulness for natural resource management, industry, and human health.

International audience; In modern cropping systems, the near-universal use of plant protection products selects for resistance in pest populations. The emergence and evolution of this adaptive trait threaten treatment efficacy. We identified determinants of fungicide resistance evolution and quantified their effects at a large spatiotemporal scale. We focused on Zymoseptoria tritici, which causes leaf blotch in wheat. Phenotypes of qualitative or quantitative resistance to various fungicides were monitored annually, from 2004 to 2017, at about 70 sites throughout 22 regions of France (territorial units of 25000km2 on average). We modelled changes in resistance frequency with regional anti-Septoria fungicide use, yield losses due to the disease and the regional area under organic wheat. The major driver of resistance dynamics was fungicide use at the regional scale. We estimated its effect on the increase in resistance and relative apparent fitness of each resistance phenotype. The predictions of the model replicated the spatiotemporal patterns of resistance observed in field populations (R2 from 0.56 to 0.82). The evolution of fungicide resistance is mainly determined at the regional scale. This study therefore showed that collective management at the regional scale could effectively complete local actions.This article is protected by copyright. All rights reserved.

Seed dormancy is an adaptive trait in plants. Breaking seed dormancy determines the timing of germination and is, thereby essential for ensuring plant survival and agricultural production. Seed dormancy and the subsequent germination are controlled by both internal cues (mainly hormones) and environmental signals. In the past few years, the roles of plant hormones in regulating seed dormancy and germination have been uncovered. However, we are only beginning to understand how light signaling pathways modulate seed dormancy and interaction with endogenous hormones. In this review, we summarize current views of the molecular mechanisms by which light controls the induction, maintenance and release of seed dormancy, as well as seed germination, by regulating hormone metabolism and signaling pathways.

Fagus sylvatica in Europe is expected to be severely affected by the ongoing climate change. In this article, seed adaptive traits, in terms of morphology and germination, of F. sylvatica populations of different postglacial lineage and intrapopulation genetic diversity were evaluated. Eight plots from two geographical provenances, Evros and Drama, were selected. Provenance shaped both morphology and germination patterns, but the effect was more pronounced on germination. Seeds from Drama were larger and heavier than those from Evros but exhibited a higher degree of dormancy and slower germination. High among-plots variability on morphology and germination was also observed, especially in Evros. This higher variability was consistent with the higher level of genetic diversity observed at genomic and chloroplast DNA markers at small or larger spatial scales from previous published studies on the same plots. Results suggested the existence of different seed adaptation strategies, mainly between provenances, as a result of possible adaptation to different environmental conditions, whereas a possible influence of a generally complex pattern of admixture between different beech subspecies and postglacial lineages could not be excluded.

Breeding for drought tolerance using novel genetic resources possessing relevant agronomic and adaptive traits is a key to enhance productivity and food security in wheat growing areas. Herein, the main objectives were (i) to use a combination scoring index (multiple scoring index, (MSI)) for selection of durum wheat genotypes under different drought stress intensities (SIs) (ii) to examine repeatability of the scoring index through bootstrap re-sample method, and (iii) to study the relationship of MSI with some drought-adaptive traits. Sixteen durum wheat genotypes were grown under rainfed and irrigated conditions during three cropping seasons (2012–2015), resulting in different drought SIs, that is, mild (SI < 0.3), moderate (0.3 < SI < 0.6), and severe (SI > 0.6). The average grain yields among test environments varied between 708 and 3631 kg ha−1. The validation of the methodology of scoring index was confirmed by the correlation coefficients between score indices and their original values across different drought SIs. According to MSI, the genotypes G16, G1, and G3 had the best combination of high productivity and high resilience to mild, moderate, and severe drought stress conditions, respectively. These results indicated that the ranking of genotypes varied among different drought SIs, which support the high potential of durum wheat for adaptation to different drought stress conditions. Based on the bootstrap samples, non-repeatable correlations were observed between the estimates of MSI from different levels of stress. The significant correlation between MSI with grain yield and 1000-kernel weight (TKW) under severe drought condition provides evidence that MSI ultimately be considered as a tool for effective selection of drought-tolerant genotypes. The MSI selected genotypes based on high productivity and resilience, to each level of drought SI, and favorable adaptive traits useful for breeding.

Increased levels of atmospheric CO2 levels (eCO2) have been shown to decrease Grain Protein Concentration (GPC) and alter wheat composition (both protein and carbohydrate components). Lower GPC and altered composition under eCO2 conditions have deleterious impacts on end-product processing, dough rheology and bread loaf volume. To determine if the decline in GPC in wheat under eCO2 could be circumvented, traits hypothesised to improve grain protein were assessed in the Australian Grains Free Air CO2 Enrichment (AGFACE) facility. Wheat genotypes were selected with enhanced nitrogen use efficiency, water use efficiency, root vigour and grain quality, and were exposed to eCO2 (550 μmol mol−1) to determine if grain quality could be retained. Results showed that these trait strategies were not able to prevent the significant decline in GPC or grain quality (P ≤ 0.001). The decline in loaf volume (P ≤ 0.001) was greater under eCO2 across the selected cultivars and environments is likely associated with reduced GPC, changes in gluten protein composition, and significant increases in arabinoxylan content. Larger quantities (increased yield, P > 0.05) of lower quality grain will be produced in the future climates (eCO2), unless crop breeding efforts focus on grain-nitrogen translocation traits so that wheat can retain high quality grain under eCO2.

Understanding the growth pattern of trees of various provenances in response to climatic conditions provides information on the adaptive potential of trees. Intra-annual density fluctuations (IADFs) are anatomical markers of variations in wood density within the annual wood increment. Latewood-like cells within earlywood, resulting from severe drought during spring and early summer, express the structural adaptation of the wood tissue to unfavorable climatic conditions. In this study, we used two 40-year old IUFRO provenance trials of Norway spruce located in the western and north-eastern Poland to i) determine the effect of provenance on the IADF frequency and ii) to define the climatic factors determining the formation of IADF. Three highly polymorphic nuclear microsatellites are used to determine the differentiation among provenances in particular between the northern and southern Polish distribution area. Our results demonstrate that the frequency of all types of IADFs is determined by the growing conditions, and only the IADFs in the transition zone are determined by provenance origin. The highest variability between provenances in response to climatic differences was observed for IADF in transition zone, where temperatures and rainfall of spring and early summer differentiated northern and southern provenances. Moreover, the IADF frequency was influenced by drought, thereby differentiating provenances in terms of their sensitivity to severe conditions. Furthermore, environmental differentiation of climate-growth reaction was expressed by a stronger impact of climatic conditions observed in the western than in the northeastern trial site. The results of this study confirm the dependency of climate related changes in wood characteristics on provenance origin. Therefore, density fluctuations seem to be an appropriate adaptive trait for selecting Norway spruce provenances with varying degree of drought sensitivity.

In dendritic river systems, gene flow is expected to occur primarily within watersheds. Yet, rare cross‐watershed transfers can also occur, whether mediated by (often historical) geological events or (often contemporary) human activities. We explored these events and their potential evolutionary consequences by analyzing patterns of neutral genetic variation (microsatellites) and adaptive phenotypic variation (male color) in wild guppies (Poecilia reticulata) distributed across two watersheds in northern Trinidad. We found the expected signatures of within‐watershed gene flow; yet we also inferred at least two instances of cross‐watershed gene flow—one in the upstream reaches and one further downstream. The upstream cross‐watershed event appears to be very recent (41 ± 13 years), suggesting dispersal via recent flooding or undocumented human‐mediated transport. The downstream cross‐watershed event appears to be considerably older (577 ± 265 years), suggesting a role for rare geological or climatological events. Alongside these strong signatures of both contemporary and historical gene flow, we found little evidence of impacts on presumably adaptive phenotypic differentiation, except perhaps in the one instance of very recent cross‐watershed gene flow. Selection in this system seems to overpower gene flow—at least on the spatiotemporal scales investigated here.

Individual animals across many different species occasionally ‘adopt’ unrelated, orphaned offspring. Although adoption may be best explained as a by-product of adaptive traits that enhance parental care or promote the development of parental skills, one factor that is possibly important for the likelihood of adoption is the history of cooperative interactions between the mother, adopted offspring and adopter. Using 652 h of behavioural samples collected over four months, we describe patterns of allogrooming and food sharing before and after an instance of non-kin adoption between two adult female common vampire bats (Desmodus rotundus) that were captured from distant sites (340 km apart) and introduced to one another in captivity. The first female died from an illness 19 days after giving birth. The second female groomed and regurgitated food to the mother more often than any other group member, then groomed, nursed and regurgitated food to the orphaned, female pup. The substantial increase in alloparental care by this female after the mother's death was not observed among the 20 other adult females that were present in the colony. Our findings corroborate previous reports of non-kin adoption in common vampire bats and are consistent with the hypothesis that non-kin adoption can be motivated, in part, by a history of cooperative interactions.

Genome-editing technologies offer unprecedented opportunities for crop improvement with superior precision and speed. This review presents an analysis of the current state of genome editing in the major cereal crops- rice, maize, wheat and barley. Genome editing has been used to achieve important agronomic and quality traits in cereals. These include adaptive traits to mitigate the effects of climate change, tolerance to biotic stresses, higher yields, more optimal plant architecture, improved grain quality and nutritional content, and safer products. Not all traits can be achieved through genome editing, and several technical and regulatory challenges need to be overcome for the technology to realize its full potential. Genome editing, however, has already revolutionized cereal crop improvement and is poised to shape future agricultural practices in conjunction with other breeding innovations. The authors would like to acknowledge funding from MINECO, Spain (PGC2018-097655-B-I00 to P Christou), Generalitat de Catalunya Grant 2017 SGR 828 to the Agricultural Biotechnology and Bioeconomy Unit (ABBU), Bill & Melinda Gates Foundation (to I. Slamet-Loedin).

Well over 1% of all flowering plants are parasites, obtaining all or part of the nutrients they need from other plants. Among this extremely heterogeneous assemblage, the Cytinaceae form a small group of holoparasites, with Cytinus as the main representative genus. Despite the small number of known species and the fact that it doesn’t attack crops or plants of economic importance, Cytinus is paradigmatic among parasitic plants. Recent research has indeed disclosed many aspects of host–parasite interactions and reproductive biology, the latter displaying a vast array of adaptive traits to lure a range of animal pollinators. Furthermore, analysis of biological activities of extracts of the most common species of Cytinus has provided evidence that this plant could be a valuable source of compounds with high potential in key applicative areas, namely food production (nutraceuticals) and the development of antimicrobial therapeutics. This article offers a complete overview of our current knowledge of Cytinus.

With no option to run away, plants' survival builds on their capacity to respond to challenges from their environment. Plants monitor their surroundings and plastically adjust their metabolism, growth and development to acclimatise and defend themselves [1]. In particular, the timing of events such as germination, flowering, pollination and seed development are key adaptive traits [2, 3]. Plants go to great lengths to get the timing of these developmental transitions coordinated with their environmental conditions [4].

How much evolutionary change in development do we expect? In this Spotlight, we argue that, as developmental biologists, we are in a prime position to contribute to the definition of a null hypothesis for developmental evolution: in other words, a hypothesis for how much developmental evolution we expect to observe over time. Today, we have access to an unprecedented array of developmental data from across the tree of life. Using these data, we can now consider development in the light of evolution, and vice versa, more deeply than ever before. As we do this, we may need to re-examine previous assumptions that appeared to serve us well when data points were fewer. Specifically, we think it is important to challenge assumptions that change is very rare for all developmental traits, especially if this assumption is used to sustain an erroneous view that evolution always optimizes adaptive traits toward increasing complexity.

Aspen (Populus tremuloides Michx) is a widespread commercial forest tree of high economic importance in western Canada and has been subject to tree improvement efforts over the past two decades. Such improvement programs rely on accurate estimates of the genetic gain in growth traits and correlated response in adaptive traits that are important for forest health. Here, we estimated genetic parameters in 10 progeny trials containing >30,000 trees with pedigree structures based on a partial factorial mating design that includes 60 half-sibs, 100 full-sib families and 1,400 clonally replicated genotypes. Estimated narrow-sense and broad-sense heritabilities were low for height and diameter (~0.2), but moderate for the dates of budbreak and leaf senescence (~0.4). Furthermore, estimated genetic correlations between growth and phenology were moderate to strong with tall trees being associated with early budbreak (r = -0.3) and late leaf senescence (r = -0.7). Survival was not compromised, but was positively associated with early budbreak or late leaf senescence, indicating that utilizing the growing season was more important for survival and growth than avoiding early fall or late spring frosts. These result suggests that populations are adapted to colder climate conditions and lag behind environmental conditions to which they are optimally adapted due to substantial climate warming observed over the last several decades for the study area.

Populations that breed along steep elevation gradients show diverse physiological and morphological changes in response to the different environmental conditions. The latter has been discussed by Bergmann’s and Allen’s ecogeographic rules about body and appendage sizes and environmental temperature. We compared morphometric measures (mass, bill width, tarsus, wing, and tail length) of a Zonotrichia capensis population in two localities at different elevations with similar latitudes and photoperiods on the western slope of the Colombian Central Andes. We compared a Low Elevation locality (LE) at 1800 m a.s.l. and a High Elevation locality (HE) at 3853 m a.s.l. that have approximate wind speeds of 1.3 m/s and 8.4 m/s, respectively. During 12 months of sampling, we captured 46 adults using mist-nets; 26 in the LE and 20 in the HE. Each individual was sexed using molecular techniques at the Laboratory of Genetics of the Department of Biological Sciences of Universidad de Caldas. Individuals (males + females) from the HE had longer wings and tails than those from the LE (F1,44 = 5.93; P = 0.019). Also, wings of males in the HE were longer than those of females in both localities and tails of males in the HE were longer than those of LE males. Our results did not agree with what was expected according to Allen’s and Bergmann’s ecogeographic rules. Longer wings and tails increase sustainment, maneuverability, and balance in low atmospheric pressures and strong air currents and these conditions are found at high elevation habitats. Most likely, the longer wings found for HE males allow greater movement during territorial behavior. Further, these differences in morphological traits along elevational gradients could result from micro-evolutionary changes between localities or phenotypic plasticity of individuals exposed to different environmental conditions. Resumen Las poblaciones que se reproducen en gradientes altitudinales, adoptan diversos cambios morfológicos para afrontar las condiciones ambientales. En el presente estudio se compararon las medidas morfológicas (peso corporal, longitud del tarso, ala, cola y culmen) de una población de Zonotrichia capensis, a diferente altitud en los Andes colombianos. Las localidades de tierra baja (TB) y alta (TA) se encuentran a 1800 m.s.n.m. y 3853 m.s.n.m., con velocidad aproximada del viento de 1.3 m/s y 8.4 m/s, respectivamente. Durante 12 meses se realizó la captura de 46 individuos (TB n=26, TA n=20) para la medición de los rasgos morfológicos. La longitud del ala de los individuos de TA fue mayor que en TB. Así mismo, en machos de TA la longitud del ala fue mayor que en hembras en general. Es posible que a las más grandes incrementen la eficiencia del vuelo en zonas ventosas y con baja presión atmosférica, como ocurre en TA. Probablemente la diferencia del tamaño del ala entre los machos de TA y las hembras, se deba a un mayor desplazamiento dentro de la conducta territorial. Estas diferencias podrían ser el resultado de cambios microevolutivos entre localidades o la plasticidad fenotípica de individuos expuestos a diferentes condiciones ambientales.

In this study functional micromorphological traits and water repellent attributes of floral and leaf surfaces of Asphodelus ramosus are presented. The branched inflorescences of A. ramosus bear numerous short-lived flowers arranged on tall flowering stalks, while the basal long-tapered leaves are long-lived. The most striking feature of the short-lived flowers of A. ramosus is the surface structure of the coloured midrib and the white bilateral sections of tepals, revealing different functionality between the two sections of tepals and the two sides of the corollas. Structural features of adaxial and abaxial epidermal cells may function predominantly for water repellence of floral tissues expanded during the humid period of the year. The leaves are more water repellent than the tepals and display declining water retention on their surfaces. It appears that micro- and nano-scale patterns observed on leaf and tepal surfaces of A. ramosus are linked to hydrophobic properties, which are important adaptive traits contributing to the seasonal performance of A. ramosus in the field, particularly in regard to water adhesion.

Although the environment varies, adaptive trait plasticity is uncommon, which can be due to either costs or limitations. Currently there is little evidence for costs of plasticity; limitations are a more promising explanation, including information reliability. A possible cause for a decrease in information reliability is the channeling of environmental information through one trait that then affects the phenotype of a second trait, the information path. Using an individual-based simulation model, I explored the ways in which configurations of trait interactions and patterns of environmental variation in space and time affect the evolution of phenotypic plasticity. I found that genotypes and phenotypes evolved to shorten and simplify the information path from the environment to fitness. A shortened path was characterized by a decrease in the amount of plasticity for traits that had a less direct connection between the environment of development and fitness. A simplified path was characterized by a decrease in the amount of plasticity for traits that had multiple paths between the environment and their phenotype. These results suggest that an eighth proposition be added to the theory of the evolution of phenotypic plasticity: Trait plasticity will evolve to minimize the information path between the environment and fitness.

The micromorphology of Hydrocharis dubia (Blume) Backer (Hydrocharitaceae) from the Far East of Russia has been studied. A detailed description of anatomical structure diversity is given for the vegetative organs, and species-specific and adaptive traits of the plant are assessed. The elongated submerged vegetative shoot of the plant is shown to have a metamorphosed anatomical structure.

In the spring of 2007, 51 full-sib and six half-sib families of European silver fir were obtained through controlled and open pollinations from the same clones in a seed orchard. Genetic variation and parameters for bud flushing were determined in two progeny tests established in a nursery. The results indicate a high genetic control of bud flushing of European silver fir. Both the additive and the dominance genetic variances were major sources of genetic variation. The additive genetic variance was greater for open-pollinated than for full-sib progeny, representing 50-95% of phenotypic variance. Narrow-sense individual heritability estimates for control-pollinated progenies ranged from 0.14 to 0.64, while the full-sib family heritability ranged from 0.09 to 0.40. In the open-pollinated progenies, the values of individual and family heritability were higher than those in control-pollinated progeny and ranged from 0.50 to 0.95 for both. In both experiments, genetic parameters were higher for bud flushing at the beginning of the growing period than at later stages. The genetic correlations between bud phenology and growth traits were positive and significant in control-pollinated progeny but not significant in open-pollinated progeny. Positive significant correlations between control-pollinated and open-pollinated progeny showed a maternal effect. Bud flushing was negatively correlated with geographic and climatic parameters of the site of parents’ origin, accounting for 83-97% of the total variation of this adaptive trait.

Knowing the environments under which biota have evolved is essential for understanding the functional traits that they possess. Here, we ask when a Mediterranean-type climate (MTC) originated in Western Australia that might help to explain some of its special plant adaptations to summer drought and heat, mild wet winters and intense summer fires. Periodic drought and fire can be traced back to the Cretaceous in southwestern Australia (SWA) but its seasonality is unknown. Previous estimates of the origin of the MTC in SWA have varied from 30 to 3 million years ago (Ma). An early proposal was that it originated in northwestern Australia 30 Ma and migrated south to its present location for which we find independent support. We collated 47 cases of what is currently known about the time of origin of adaptive responses to summer drought and heat, wet winters and periodic intense fire among flowering plants in SWA. About 15% arose in the 40–30-million-year (My) period, 32% in the 30–20-My period and 47% in the 20–10-My period, suggesting that a MTC may have been widespread in SWA by the mid-Miocene, but there may have been local appearances (proto-MTC) up to 20 My earlier. Uncertainties remain about the location of lineages at various times, the fitness benefits of apparent adaptive traits and their confinement to a MTC, and the significance of the origin versus the onset of diversification of traits. The current dearth of C4 grasses in SWA is consistent with other indications of the absence of a prior history of a summer-dominant rainfall, suggesting that the current MTC arose from a uniform-rainfall climate. Other lines of evidence that might refine these findings include the chemical composition of, and application of geochronometers to, laterites, carbonates and corals that have been used with success elsewhere. We conclude by noting that there may have been a mixture of climates for much of the time, indicated by the persistence of a few rainforest species up to 3 Ma, while there have been strong climatic oscillations about a MTC ‘mean’ over the last 5 My.

Due to its productivity and potential to adapt to the expected climate change, the Douglas-fir is one of the most important commercial non-native forest tree species in Europe. Currently, seeds from both non-native European and native American seed stands are used for plantations. In this study, we investigate European seed lots for their native origin (variety and potential geographic origin in America) and assess the adaptability, growth and survival potential of European versus American Douglas-fir seed lots. We compare the genetic diversity, morphological characteristics such as height (h), root collar diameter (rcd) and the ratio of h/rcd, and the timing of bud burst. We investigate 852 1-year-old seedlings from 10 different US and European seed lots representing 5 provenance regions which are sold in Germany and Austria. Seedlings are genotyped for 13 nuclear SSRs and analysed together with reference data set and standard genetic structuring and assignment methods. Adaptive traits of morphological characteristics and timing of bud burst of the seedlings are recorded and statistically analysed. The results show that the investigated European seedlings originate from recommended American native seed sources and represent both varieties and inter-varietal admixed individuals. European seedlings have a lower genetic diversity versus the American seedlings and native populations. They show significant differences in the adaptive traits such as morphological characteristics and timing of bud burst. According to the genetic diversity indices, certified North American Douglas-fir seed sources should be preferred for planting in Central Europe.

The transition from ‘well-marked varieties’ of a single species into ‘well-defined species’—especially in the absence of geographic barriers to gene flow (sympatric speciation)—has puzzled evolutionary biologists ever since Darwin1,2. Gene flow counteracts the buildup of genome-wide differentiation, which is a hallmark of speciation and increases the likelihood of the evolution of irreversible reproductive barriers (incompatibilities) that complete the speciation process3. Theory predicts that the genetic architecture of divergently selected traits can influence whether sympatric speciation occurs4, but empirical tests of this theory are scant because comprehensive data are difficult to collect and synthesize across species, owing to their unique biologies and evolutionary histories5. Here, within a young species complex of neotropical cichlid fishes (Amphilophus spp.), we analysed genomic divergence among populations and species. By generating a new genome assembly and re-sequencing 453 genomes, we uncovered the genetic architecture of traits that have been suggested to be important for divergence. Species that differ in monogenic or oligogenic traits that affect ecological performance and/or mate choice show remarkably localized genomic differentiation. By contrast, differentiation among species that have diverged in polygenic traits is genomically widespread and much higher overall, consistent with the evolution of effective and stable genome-wide barriers to gene flow. Thus, we conclude that simple trait architectures are not always as conducive to speciation with gene flow as previously suggested, whereas polygenic architectures can promote rapid and stable speciation in sympatry., Population genomic analyses of Midas cichlid fishes in young Nicaraguan crater lakes suggest that sympatric speciation is promoted by polygenic architectures.

Black spruce ecotypes exhibit temperature-adapted bud burst, while bud set is independent of temperature. Warmer conditions could advance bud burst, but no direct effect is expected for bud set Phenological adjustment is a key adaptive trait closely associated with the environment. Species spreading over a wide geographical range can evolve ecotypes that are able to grow and reproduce under particular local conditions. We compared the thermal conditions during bud phenology in black spruce [Picea mariana (Mill.) BSP] populations to assess the differences among ecotypes. The phases of bud burst and bud set were monitored weekly during 2015, 2017 and 2018 in saplings growing in a common garden, and originating from a latitudinal range across the whole closed boreal forest of Quebec, Canada. Provenances from the northern sites exhibited both earlier bud burst and bud set, with differences of 8 and 11 days, respectively, between the northern and southern provenances. Bud burst occurred under colder temperatures in provenances from the northern sites. The phase of open bud occurred at 4 °C in the northernmost provenance, compared to 8 °C in the southernmost one. Bud set occurred in summer, when temperatures still exceeded 20 °C, and no difference was observed between provenances. Black spruce populations exhibit a clear clinal differentiation in ecotypes showing temperature-adapted bud burst of the apical meristem. The need to complete formation of the winter bud and hardening before autumn leads bud set to being independent of the air temperature. Warmer conditions can affect the timings of spring phenology by anticipating bud burst in black spruce, although no direct effect may be expected for bud set.

Consistent individual differences in behavior [i.e., behavioral types (BTs)], are common across the animal kingdom. Consistency can make behavior an adaptive trait for mate choice decisions. Here, we present a conceptual framework to explain how and why females might evaluate a male's BT before mating. Because BTs are consistent across time or context, a male's BT can be a reliable indicator of his potential to provide direct benefits. Heritable BTs can enable informed mate choice via indirect benefits. Many key issues regarding patterns of mate choice, including sensory biases, context dependence, and assortative mating apply to BT-dependent mate choice. Understanding the relationship between BTs and mate choice may offer insights into patterns of variation and consistency common in behavioral traits.

Spatial learning is an ecologically important trait well studied in vertebrates and a few invertebrates yet poorly understood in crustaceans. We investigated the ability of European shore crabs, Carcinus maenas , to learn a complex maze over four consecutive weeks using food as a motivator. Crabs showed steady improvement during this conditioning period in both the time taken to find the food and in the number of wrong turns taken. Crabs also clearly remembered the maze as when returned two weeks later but without any food, they all returned to the end of the maze in under 8 min. Crabs that had not been conditioned to the maze (naive animals) took far longer to reach the end, and many (42%) did not venture to the end of the maze at all during the 1 h study period. This study provides an initial description of spatial learning in a benthic decapod; a better appreciation of this adaptive trait in these animals will develop our understanding of resource exploitation by benthic crustaceans and their ecological roles.

Pulses are the main source of protein and minerals in the vegetarian diet. These are primarily cultivated on marginal lands with few inputs in several resource-poor countries of the world, including several in South Asia. Their cultivation in resource-scarce conditions exposes them to various abiotic and biotic stresses, leading to significant yield losses. Furthermore, climate change due to global warming has increased their vulnerability to emerging new insect pests and abiotic stresses that can become even more serious in the coming years. The changing climate scenario has made it more challenging to breed and develop climate-resilient smart pulses. Although pulses are climate smart, as they simultaneously adapt to and mitigate the effects of climate change, their narrow genetic diversity has always been a major constraint to their improvement for adaptability. However, existing genetic diversity still provides opportunities to exploit novel attributes for developing climate-resilient cultivars. The mining and exploitation of adaptive traits imparting tolerance/resistance to climate-smart pulses can be accelerated further by using cutting-edge approaches of biotechnology such as transgenics, genome editing, and epigenetics. This review discusses various classical and molecular approaches and strategies to exploit adaptive traits for breeding climate-smart pulses.

Identifying the evolutionary and developmental bases of adaptive phenotypes is of central interest in evolutionary biology. Cichlid fishes have been a useful research model due to their extraordinary phenotypic diversity reflecting adaptations to often very narrow niches. Among them, the scale-eating Perissodus microlepis is considered to be a textbook example for balanced polymorphism: its asymmetric head and handed behavior is thought to be maintained by negative frequency-dependent selection via prey–predator interactions. However, several contradictory findings and open questions have emerged in recent years, challenging our understanding of this model. Here, we review existing evidence for both genetic and non-genetic effects influencing head asymmetry, the association between morphological asymmetry and behavioral laterality, and the identification of signatures of balancing selection. Recent technological and theoretical developments have opened new exciting research avenues that can help identifying the drivers of adaptive traits in P. microlepis and other nonmodel organisms, and we discuss promising directions worth exploring. We highlight the importance of using integrative approaches that analyze genetic, environmental, and epigenetic variation in natural populations to aid a comprehensive understanding of why cichlids are so diverse and how evolution has produced and continues to generate such a vibrant and often complex phenotypic diversity. published

Background Flowering time and maturity are among the most important adaptive traits in soybean (Glycine max (L.) Merill). Flowering Locus T (FT) family genes function as key flowering integrators, with flowering-promoting members GmFT2a/GmFT5a and flowering-inhibiting members GmFT4/GmFT1a antagonistically regulating vegetative and reproductive growth. However, to date, the relations between natural variations of FT family genes and the diversity of flowering time and maturity in soybean are not clear. Therefore, we conducted this study to discover natural variations in FT family genes in association with flowering time and maturity. Results Ten FT family genes, GmFT1a, GmFT1b, GmFT2a, GmFT2b, GmFT3a, GmFT3b, GmFT4, GmFT5a, GmFT5b and GmFT6, were cloned and sequenced in the 127 varieties evenly covering all 14 known maturity groups (MG0000-MGX). They were diversified at the genome sequence polymorphism level. GmFT3b and GmFT5b might have experienced breeding selection in the process of soybean domestication and breeding. Haplotype analysis showed that a total of 17 haplotypes had correlative relationships with flowering time and maturity among the 10 FT genes, namely, 1a-H3, 1b-H1, 1b-H6, 1b-H7, 2a-H1, 2a-H3, 2a-H4, 2a-H9, 2b-H3, 2b-H4, 2b-H6, 2b-H7, 3b-H4, 5a-H1, 5a-H2, 5a-H4 and 5b-H1. Based on the association analysis, 38 polymorphic sites had a significant association with flowering time at the level of p

In cereal breeding programs, improved yield potential and stability are ultimate goals when developing new varieties. To facilitate achieving these goals, reproductive success under stressful growing conditions is of the highest priority. In recent times, small RNA (sRNA)-mediated pathways have been associated with the regulation of genes involved in stress adaptation and reproduction in both model plants and several cereals. Reproductive and physiological traits such as flowering time, reproductive branching, and root architecture can be manipulated by sRNA regulatory modules. We review sRNA-mediated pathways that could be exploited to expand crop diversity with adaptive traits and, in particular, the development of high-yielding stress-tolerant cereals: SMARTER cereal breeding through 'Small RNA-Mediated Adaptation of Reproductive Targets in Epigenetic Regulation'.

Natural populations of woody species are adapted to local growth conditions. Non-local provenances may sense the difference between the local environment and the site conditions at their origin. To study the impact of provenance selection of planting stock in (re)forestation and landscape plantings, the variation in the adaptive traits bud burst, bud set, flower opening, leaf morphology and height increment was examined within and between local and non-local provenances of Prunus spinosa in a provenance trial, located in Flanders (northern part of Belgium), during two consecutive years (shrubs were three and four years old) which contrasted strongly in spring temperatures. Five Flemish provenances were included together with three commercially available provenances originating from Wallonia (southern part of Belgium), Hungary and Spain. When comparing the two observational years, the Spanish provenance showed a plastic temporal response in bud burst, while the Hungarian provenance and to a lesser extent the Walloon provenance responded plastically in bud set. The Hungarian provenance flushed first in 2013 but was not the first to flush in 2014, whereas in 2014 flowers opened first. The rank order among the provenances in flushing was not maintained in flower opening although both phenophases occur congruently. Wide-leaved shrubs tended to flush and flower slightly earlier and to grow slightly quicker compared to narrow-leaved shrubs, possibly as a result of historical hybridisation processes. Height increment did not vary significantly between the Flemish and commercial provenances, except the Hungarian provenance, which showed a slightly retarded youth growth. The different responses between local and non-local provenances may indicate maladaptation of the latter.

The recently published reference genome of Aegilops tauschii provides new insights into the originator of the D genome donor of hexaploid wheat. This will be a foundation for exploring the genomic diversity underpinning adaptive traits in wheat, and ultimately advance wheat improvement efforts.

The effects of a single trait on more than one ecological function is called ecological pleiotropy. Traits that exhibit ecological pleiotropy are relevant to eco-evolutionary dynamics because the structure of interaction between the trait and its ecological functions alters how eco-evolutionary feedback loops emerge. Density-dependent selection (DDS) assumes that a single trait affects both density-independent and density-dependent population growth through ecological pleiotropy, and is one of the simplest routes for feedback loops. The r/K theory proposes a mechanism by which DDS occurs, but its predictions were poorly explored in an eco-evolutionary context. Some assumptions of the r/K theory seems to be relevant for the eco-evolution of predator-prey interactions. However, the relationship between these theories were poorly explored. Here, we investigate how does the r/K theory relates to the eco-evolution of predator-prey systems. We seek to answer two questions: (1) What are the system’s parameters that affect the predominance of r- and K-selection? (2) Does system’s qualitative behaviour depends on whether the predominant selection on prey population is an r- or a K-selection? To answer these questions, we built a model of differential equations describing the eco-evolutionary dynamics of a predator-prey system. We assume that prey vulnerability to predation is an adaptive trait that affects preys density-dependent growth rate through ecological pleiotropy. Then, we partitioned the selection gradient in its r- and K-selection components and evaluate how their magnitude relates to systems behaviour. We found that stable predator-prey cycles only occurs when K-selection is predominant. When r-selection is predominant, cycles lead to a runaway dynamics. Furthermore, the way predators parameters affect prey position in the r/K continuum depends on how they affect predation risk. While increasing predation risk increases K-selection, decreasing it increases r-selection. We discuss the relevance of the structure of ecological pleiotropy to our results and the perspectives that unifies the r/K theory and eco-evolutionary dynamics.

Objectives: Andean and Tibetan high‐altitude natives exhibit a high concentration of nitric oxide (NO) in the lungs, suggesting that NO plays an adaptive role in offsetting hypobaric hypoxia. We examined the exhaled NO concentration as well as partial pressure of several additional high‐altitude native populations in order to examine the possibility that this putative adaptive trait, that is, high exhaled NO, is universal. Methods: We recruited two geographically diverse highland native populations, Tawang Monpa (TM), a Tibetan derived population in North‐Eastern India (n = 95, sampled at an altitude of ~3,200 m), and Peruvian Quechua from the highland Andes (n = 412). The latter included three distinct subgroups defined as those residing at altitude (Q‐HAR, n = 110, sampled at 4,338 m), those born and residing at sea‐level (Q‐BSL, n = 152), and those born at altitude but migrant to sea‐level (Q‐M, n = 150). In addition, we recruited a referent sample of lowland natives of European ancestry from Syracuse, New York. Fraction of exhaled NO concentrations were measured using a NIOX NIMO following the protocol of the manufacturer. Results: Partial pressure of exhaled nitric oxide (PENO) was significantly lower (p

High-throughput phenotyping platforms (HTPPs) provide novel opportunities to more effectively dissect the genetic basis of drought-adaptive traits. This genome-wide association study (GWAS) compares the results obtained with two Unmanned Aerial Vehicles (UAVs) and a ground-based platform used to measure Normalized Difference Vegetation Index (NDVI) in a panel of 248 elite durum wheat (Triticum turgidum L. ssp. durum Desf.) accessions at different growth stages and water regimes. Our results suggest increased ability of aerial over ground-based platforms to detect quantitative trait loci (QTL) for NDVI, particularly under terminal drought stress, with 22 and 16 single QTLs detected, respectively, and accounting for 89.6 vs. 64.7% phenotypic variance based on multiple QTL models. Additionally, the durum panel was investigated for leaf chlorophyll content (SPAD), leaf rolling and dry biomass under terminal drought stress. In total, 46 significant QTLs affected NDVI across platforms, 22 of which showed concomitant effects on leaf greenness, 2 on leaf rolling and 10 on biomass. Among 9 QTL hotspots on chromosomes 1A, 1B, 2B, 4B, 5B, 6B, and 7B that influenced NDVI and other drought-adaptive traits, 8 showed per se effects unrelated to phenology.

During the past decade, a flurry of research focusing on the role of peptides as short- and long-distance signaling molecules in plant cell communication has been undertaken. Here, we focus on peptides derived from nonfunctional precursors, and we address several key questions regarding peptide signaling. We provide an overview of the regulatory steps involved in producing a biologically active peptide ligand that can bind its corresponding receptor(s) and discuss how this binding and subsequent activation lead to specific cellular outputs. We discuss different experimental approaches that can be used to match peptide ligands with their receptors. Lastly, we explore how peptides evolved from basic signaling units regulating essential processes in plants to more complex signaling systems as new adaptive traits developed and how nonplant organisms exploit this signaling machinery by producing peptide mimics.

Parental effects are an important source of adaptive traits. By contrast, parental effects failing to regulate offspring phenotype to fit current conditions could be deleterious. Although adaptive parental responses to single cues have been identified, we lack an understanding of the reversibility of parental effects across breeding cycles in a fluctuating environment. Social status of parents can occasionally fluctuate and, in turn, influence high-fitness pathways available to offspring. We show that social competition status results in robust parental effects on growth in mice. Dominant males produce faster growing offspring because of status related cues, not genetic associations. The timing, effect-size, and sex-specificity of this paternal effect are modulated by maternal experience. We experimentally demonstrate that status-ascending males produce heavier sons than before, and status-descending males produce lighter sons than before. Paternal status predicts genome-wide transcription in the liver, including transcriptional networks controlling xenobiotic and fatty acid metabolism, and oxidative phosphorylation. Our study demonstrates that paternal social status reversibly conditions offspring growth in naturalistic environments.

Artículo 10 páginas, 3 figuras 1 tabla, Understanding the origin and maintenance of phenotypic variation, particularly across a continuous spatial distribution, represents a key challenge in evolutionary biology. For this, animal venoms represent ideal study systems: they are complex, variable, yet easily quantifiable molecular phenotypes with a clear function. Rattlesnakes display tremendous variation in their venom composition, mostly through strongly dichotomous venom strategies, which may even coexist within a single species. Here, through dense, widespread population-level sampling of the Mojave rattlesnake, Crotalus scutulatus, we show that genomic structural variation at multiple loci underlies extreme geographical variation in venom composition, which is maintained despite extensive gene flow. Unexpectedly, neither diet composition nor neutral population structure explain venom variation. Instead, venom divergence is strongly correlated with environmental conditions. Individual toxin genes correlate with distinct environmental factors, suggesting that different selective pressures can act on individual loci independently of their co-expression patterns or genomic proximity. Our results challenge common assumptions about diet composition as the key selective driver of snake venom evolution and emphasize how the interplay between genomic architecture and local-scale spatial heterogeneity in selective pressures may facilitate the retention of adaptive functional polymorphisms across a continuous space., Funding: Leverhulme Trust Grant RPG 2013-315 to WW, Santander Early Career Research Scholarship to GZ, Ministerio de Economía y Competitividad Grant BFU2013-42833-P to JJC.

The role and importance of social learning have been investigated by many researchers because it is observed in many animals and is expected to play a significant role in cultural phenomena. We explore the coevolution between individual learning and social learning on a rugged fitness landscape as a realistic condition in which they can interact with each other. We demonstrate that social learning allows individuals not to have adaptive traits innately, and thus, has two important roles to enhance individual fitness. First, social learning spreads and keeps the adaptive phenotypes acquired by individual learning. Second, social learning enables individuals to explore a wide range of fitness landscape by the increased population diversity. Based on the difference of the roles of individual and social learning, they can work complementarily in the course of adaptive evolution on the rugged fitness landscape.

Species barriers are tested in hybrid zones when gene flow occurs between hybridizing species. Hybridization can erode species barriers, lead to the introgression of adaptive traits, or remain stable through time. Outcomes in hybrid zones are influenced by divergence between the hybridizing taxa, behavior, ecology, and geography. Parasites and pathogens play a major role in host fitness and appear to have varied impacts on species barriers in hybrid zones. We comprehensively reviewed the literature on parasitism in animal hybrid zones and present an evolutionary framework within which to consider parasite–hybrid interactions. Parasites most frequently show potential to contribute to species barrier breakdown in hybrid zones, but also frequently show potential to facilitate the maintenance of species barriers. Incorporating eco-immunology, parasite community theory, and spatiotemporal approaches will be important as genomic tools allow researchers to examine parasites and hybrid zones at greater resolution and in a diversity of natural habitats.

Wildfires underpin the dynamics and diversity of many ecosystems worldwide, and plants show a plethora of adaptive traits for persisting recurrent fires. Many fire-prone ecosystems also harbor a rich fauna; however, knowledge about adaptive traits to fire in animals remains poorly explored. We review existing literature and suggest that fire is an important evolutionary driver for animal diversity because (1) many animals are present in fire-prone landscapes and may have structural and phenotypic characters that contribute to adaptation to these open landscapes; and (2) in some cases, animals from fire-prone ecosystems may show specific fire adaptations. While there is limited evidence on morphological fire adaptations in animals, there is evidence suggesting that different behaviors might provide a rich source of putative fire adaptations; this is because, in contrast to plants, most animals are mobile, unitary organisms, have reduced survival when directly burnt by fire and can move away from the fire. We call for research on fire adaptations (morphological, behavioral, and physiological) in animals, and emphasize that in the animal kingdom many fire adaptations are likely to be behavioral. While it may be difficult to discern these adaptations from other animal behaviors, making this distinction is fundamental if we want to understand the role of fire in shaping biodiversity. Developing this understanding is critical to how we view and manage our ecosystems in the face of current global and fire regime changes., This research was funded by the project FILAS (CGL2015-64086-P) from the Spanish Government (Ministerio de Economía y Competitividad) and the PROMETEO/2016/021 project from the Valencia government (Generalitat Valenciana, Spain)

In specialized predators, a variety of adaptations have evolved to such a level of specificity that they allow very effective exploitation of focal prey. Venom is an essential adaptive trait of predatory venomous species, such as spiders, yet our knowledge of spider venom is incomplete. In agreement with the prey preference hypothesis, we expected that the venom of spider specialists should be more toxic to focal than to alternative prey, because it is composed of prey-specific toxins. Here we used spiders with three types of trophic specializations: specialists that were ant-eating, termite-eating and spider-eating. We compared the efficacy of prey capture of preferred and alternative prey (measured as paralysis latency) with that of related generalists and profiled the venom of the studied species using proteomic methods. We used 22 spider species: six myrmecophagous, two termitophagous, three araneophagous and 11 euryphagous generalist species belonging to different families. We found that ten of the eleven specialist species induced significantly shorter paralysis latency in preferred prey than in alternative prey. Generalists exhibited either similar efficiency on both prey types or slightly higher efficiency on preferred prey. Multivariate analysis of proteomic profiles (peptides and proteins) revealed significant differences between trophic specializations, particularly in peptides. Specialists appear to have venom composed of unique specific compounds as revealed by the multivariate ordination and indicator analysis. These components are likely prey-specific toxins.

The circadian clock is an endogenous timing system based on the self-sustained oscillation in individual cells. These cellular circadian clocks compose a multicellular circadian system working at respective levels of tissue, organ, plant body. However, how numerous cellular clocks are coordinated within a plant has been unclear. There was little information about behavior of circadian clocks at a single-cell level due to the difficulties in monitoring circadian rhythms of individual cells in an intact plant. We developed a single-cell bioluminescence imaging system using duckweed as the plant material and succeeded in observing behavior of cellular clocks in intact plants for over a week. This imaging technique quantitatively revealed heterogeneous and independent manners of cellular clock behaviors. Furthermore, these quantitative analyses uncovered the local synchronization of cellular circadian rhythms that implied phase-attractive interactions between cellular clocks. The cell-to-cell interaction looked to be too weak to coordinate cellular clocks against their heterogeneity under constant conditions. On the other hand, under light-dark conditions, the heterogeneity of cellular clocks seemed to be corrected by cell-to-cell interactions so that cellular clocks showed a clear spatial pattern of phases at a whole plant level. Thus, it was suggested that the interactions between cellular clocks was an adaptive trait working under day-night cycles to coordinate cellular clocks in a plant body. These findings provide a novel perspective for understanding spatio-temporal architectures in the plant circadian system.

Breeding maize for drought tolerance necessitates the knowledge on tolerant genotypes, molecular basis of drought tolerance mechanism, action, and expression pattern of genes. Studying the expression pattern and gene action of candidate genes during drought stress in the hybrids will help in choosing target genes for drought tolerance breeding. In the present investigation, a set of five hybrids and their seven parents with a variable level of tolerance to drought stress was selected to study the magnitude and the direction of 52 drought-responsive candidate genes distributed across various biological functions, viz., stomatal regulation, root development, detoxification, hormone signaling, photosynthesis, and sugar metabolism. The tolerant parents, HKI1105 and CML425, and their hybrid, ADWLH2, were physiologically active under drought stress, since vital parameters viz., chlorophyll, root length and relative water content, were on par with the respective well-watered control. All the genes were up-regulated in ADWLH2, many were down-regulated in HM8 and HM9, and most were down-regulated in PMH1 and PMH3 in the shoots and roots. The nature of the gene action was controlled by the parental combination rather than the parent per se. The differentially expressed genes in all five hybrids explained a mostly non-additive gene action over additivity, which was skewed toward any of the parental lines. Tissue-specific gene action was also noticed in many of the genes. The non-additive gene action is driven by genetic diversity, allele polymorphism, events during gene regulation, and small RNAs under the stress condition. Differential regulation and cross-talk of genes controlling various biological functions explained the basis of drought tolerance in subtropical maize hybrids. The nature of the gene action and the direction of the expression play crucial roles in designing introgression and hybrid breeding programmes to breed drought tolerant maize hybrids.