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Artificial water bodies like ditches, fish ponds, weirs, reservoirs, fish ladders, and irrigation channels are usually constructed and managed to optimize their intended purposes. However, human-made aquatic systems also have unintended consequences on ecosystem services and biogeochemical cycles. Knowledge about their functioning and possible additional ecosystem services is poor, especially compared to natural ecosystems. A GIS analysis indicates that currently only ~ 10% of European surface waters are covered by the European Water Framework directive, and that a considerable fraction of the excluded systems are likely human-made aquatic systems. There is a clear mismatch between the high possible significance of human-made water bodies and their low representation in scientific research and policy. We propose a research agenda to build an inventory of human-made aquatic ecosystems, support and advance research to further our understanding of the role of these systems in local and global biogeochemical cycles as well as to identify other benefits for society. We stress the need for studies that aim to optimize management of human-made aquatic systems considering all their functions and to support programs designed to overcome barriers of the adoption of optimized management strategies. MK and PSK were financially supported by the German Research Foundation (DFG) (project TregaTa, KO 1911/6- 1). JH was financially supported by the Grant Agency of the Czech Republic, project no. 17-09310S. RM was supported by project C-HydroChange funded by the Spanish Ministry of Economy, Industry and Competitiveness (CGL2017-86788-C3-2-P). AL was supported by Estonian Research Council Grants PSG 32 and IUT 21-2 of the Estonian Ministry of Education and Research. This study benefitted from the collaborative environment of the GLEON network. MK and PSK were financially supported by the German Research Foundation (DFG) (project TregaTa, KO 1911/6- 1). JH was financially supported by the Grant Agency of the Czech Republic, project no. 17-09310S. RM was supported by project C-HydroChange funded by the Spanish Ministry of Economy, Industry and Competitiveness (CGL2017-86788-C3-2-P). AL was supported by Estonian Research Council Grants PSG 32 and IUT 21-2 of the Estonian Ministry of Education and Research. This study benefitted from the collaborative environment of the GLEON network.

The role of tropical lakes and reservoirs in the global carbon cycle has received increasing attention in the past decade, but our understanding of its variability is still limited. The metabolism of tropical systems may differ profoundly from temperate systems due to the higher temperatures and wider variations in precipitation. Here, we investigated the spatial and temporal patterns of the variability in the partial pressure of carbon dioxide (pCO2) and its drivers in a set of 102 low-latitude lakes and reservoirs that encompass wide gradients of precipitation, productivity and landscape properties (lake area, perimeter-to-area ratio, catchment size, catchment area-to-lake area ratio, and types of catchment land use). We used multiple regressions and structural equation modeling (SEM) to determine the direct and indirect effects of the main in-lake variables and landscape properties on the water pCO2 variance. We found that these systems were mostly supersaturated with CO2 (92% spatially and 72% seasonally) regardless of their trophic status and landscape properties. The pCO2 values (9–40,020 μatm) were within the range found in tropical ecosystems, and higher (p

Contains fulltext : 199551.pdf (Publisher’s version ) (Open Access)

International audience; River plastic pollution is an environmental challenge of growing concern. However, there are still many unknowns related to the principal drivers of river plastic transport. Floating aquatic vegetation, such as water hyacinths, have been found to aggregate and carry large amounts of plastic debris in tropical river systems. Monitoring the entrapment of plastics in hyacinths is therefore crucial to answer the relevant scientific and societal questions. Longterm monitoring efforts are yet to be designed and implemented at large scale and various field measuring techniques can be applied. Here, we present a field guide on available methods that can be upscaled in space and time, to characterize macroplastic entrapment within floating vegetation. Five measurement techniques commonly used in plastic and vegetation monitoring were applied to the Saigon river, Vietnam. These included physical sampling, Unmanned Aerial Vehicle imagery, bridge imagery, visual counting, and satellite imagery. We compare these techniques based on their suitability to derive metrics of interest, their relevancy at different spatiotemporal scales and their benefits and drawbacks. This field guide can be used by practitioners and researchers to design future monitoring campaigns and to assess the suitability of each method to investigate specific aspects of macroplastic and floating vegetation interactions.

Globally, there are millions of kilometres of drainage ditches which have the potential to emit the powerful greenhouse gas methane (CH4), but these emissions are not reported in budgets of inland waters or drained lands. Here, we synthesise data to show that ditches spanning a global latitudinal gradient and across different land uses emit large quantities of CH4 to the atmosphere. Area-specific emissions are comparable to those from lakes, streams, reservoirs, and wetlands. While it is generally assumed that drainage negates terrestrial CH4 emissions, we find that CH4 emissions from ditches can, on average, offset ∼10% of this reduction. Using global areas of drained land we show that ditches contribute 3.5 Tg CH4 yr−1 (0.6–10.5 Tg CH4 yr−1); equivalent to 0.2%–3% of global anthropogenic CH4 emissions. A positive relationship between CH4 emissions and temperature was found, and emissions were highest from eutrophic ditches. We advocate the inclusion of ditch emissions in national GHG inventories, as neglecting them can lead to incorrect conclusions concerning the impact of drainage-based land management on CH4 budgets.

Documenting the patterns of biological diversity on Earth has always been a central challenge in macroecology and biogeography. However, for the diverse group of freshwater plants, such research program is still in its in- fancy. Here, we examined global variation in taxonomic, functional and phylogenetic beta diversity patterns of lake macrophytes using regional data from six continents. A data set of ca. 480 lake macrophyte community ob- servations, together with climatic, geographical and environmental variables, was compiled across 16 regions worldwide. We (a) built the very first phylogeny comprising most freshwater plant lineages; (b) exploited a wide array of functional traits that are important to macrophyte autoecology or that relate to lake ecosystem functioning; (c) assessed if different large-scale beta diversity patterns show a clear latitudinal gradient from the equator to the poles using null models; and (d) employed evolutionary and regression models to first identify the degree to which the studied functional traits show a phylogenetic signal, and then to estimate community- environment relationships at multiple spatial scales. Our results supported the notion that ecological niches evolved independently of phylogeny in macrophyte lineages worldwide. We also showed that taxonomic and phylogenetic beta diversity followed the typical global trend with higher diversity in the tropics. In addition, we were able to confirm that species, multi-trait and lineage compositions were first and foremost structured by climatic conditions at relatively broad spatial scales. Perhaps more importantly, we showed that large-scale processes along latitudinal and elevational gradients have left a strong footprint in the current diversity patterns and community-environment relationships in lake macrophytes. Overall, our results stress the need for an inte- grative approach to macroecology, biogeography and conservation biology, combining multiple diversity facets at different spatial scales. JGG appreciates financial support from the Spanish Ministry of Economy and Industry [project METAPONDS, grant CGL2017- 84176R], the Junta de Castilla y León [grant LE004G18] and from the Fundación Biodiversidad (Spanish Ministry for Ecological Transi- tion and Demographic Challenge). BAL was supported by National Research, Development and Innovation Fund [grant NKFIH, OTKA PD120775] and by the Bolyai János Research Scholarship of the Hun- garian Academy of Sciences. S.K. was supported by NWO Veni [grant 86312012]. Sampling of the coastal Brazilian lakes was financed by NWO [grant W84-549]; The National Geographic Society [grant 7864-5]; and CNPq [grants 480122, 490409, 311427]. We thank the SALGA team, especially Gissell Lacerot, Nestor Mazzeo, Vera Huszar, David da Motta Marques, and Erik Jeppesen for organizing and exe- cuting the SALGA field sampling campaign and Bruno Irgang† and Eduardo Alonso Paz for helping with identification. We thank Minne- sota and Wisconsin Departments of Natural Resources for collecting the macrophyte data. We are grateful to Carol Reschke for her work in combining and performing quality control for the Minnesota mac- rophyte data used in the analysis. This is contribution no. 607 of the Natural Resources Research Inst. of the Univ. of Minnesota Duluth. Provision of New Zealand macrophyte data was possible via NIWA SSIF funding. JGG appreciates financial support from the Spanish Ministry of Economy and Industry [project METAPONDS, grant CGL2017- 84176R], the Junta de Castilla y León [grant LE004G18] and from the Fundación Biodiversidad (Spanish Ministry for Ecological Transi- tion and Demographic Challenge). BAL was supported by National Research, Development and Innovation Fund [grant NKFIH, OTKA PD120775] and by the Bolyai János Research Scholarship of the Hun- garian Academy of Sciences. S.K. was supported by NWO Veni [grant 86312012]. Sampling of the coastal Brazilian lakes was financed by NWO [grant W84-549]; The National Geographic Society [grant 7864-5]; and CNPq [grants 480122, 490409, 311427]. We thank the SALGA team, especially Gissell Lacerot, Nestor Mazzeo, Vera Huszar, David da Motta Marques, and Erik Jeppesen for organizing and exe- cuting the SALGA field sampling campaign and Bruno Irgang† and Eduardo Alonso Paz for helping with identification. We thank Minne- sota and Wisconsin Departments of Natural Resources for collecting the macrophyte data. We are grateful to Carol Reschke for her work in combining and performing quality control for the Minnesota mac- rophyte data used in the analysis. This is contribution no. 607 of the Natural Resources Research Inst. of the Univ. of Minnesota Duluth. Provision of New Zealand macrophyte data was possible via NIWA SSIF funding.

Water hyacinth is able to sequester large amounts of carbon dioxide (CO2) in wetlands. At the same time, the high production of organic matter combined with the plant’s capacity to limit the diffusion of oxygen from the atmosphere into the water creates favorable conditions for the production of methane (CH4). The combination of these mechanisms challenges the prediction of water hyacinth’s net effects on greenhouse gas (GHG) emissions. To unravel the impact of water hyacinth on GHG fluxes, we performed an extensive fieldwork study encompassing 22 sites dominated by water hyacinth in the Pantanal and Amazon during two different seasons. The highest CH4 emissions from water hyacinth beds occurred in shallow systems where sediment rooting enabled plant-mediated CH4 transport (307 ± 407 mg CH4 m−2 day−1 in waters shallower than 1 m, as opposed to 6.1 ± 10.6 mg CH4 m−2 day−1 in deeper waters). When CO2 uptake rates are added to the GHG budget (in terms of global warming potential), the water bodies were usually a GHG sink (− 5.2 ± 10 gCO2 eq m−2 day−1). The strength of the sink is highest in deeper systems where even a low water hyacinth coverage may already offset open water emissions. This dual effect of strong CO2 uptake—and at least temporal carbon storage in biomass—in combination with a high CO2–to-biomass-to-CH4 (and possibly back to CO2) conversion highlights the necessity to include vegetation characteristics in relation to depth when estimating GHG fluxes for tropical wetlands.

Increased periods of prolonged droughts followed by severe precipitation events are expected throughout South America due to climate change. Freshwater sediments are especially sensitive to these changing climate conditions. The increased oscillation of water levels in aquatic ecosystems causes enhanced cycles of sediment drying and rewetting. Here we experimentally evaluate the effects of induced drought followed by a rewetting event on the release of carbon dioxide (CO2), methane (CH4), nutrients (nitrogen and phosphorus), and trace elements (iron, manganese, and zinc) from the sediment of a tropical reservoir in southeastern Brazil. Furthermore, we used bulb onions (Allium cepa) to assess the potential cytogenotoxicity of the water overlying sediments after rewetting. We found peaks in CO2 and CH4 emissions when sediments first transitioned from wet to dry, with fluxes declining as sediments dried out. CO2 emissions peaked again upon rewetting, whereas CH4 emissions remained unaltered. Our experiment also revealed average increases by up to a factor of ~5000 in the release rates of nutrients and trace elements in water overlying sediments after rewetting. These increased release rates of potentially toxic compounds likely explain the lower replication of Allium cepa cells (up to 22% reduction) exposed to water overlying sediments after rewetting. Our findings suggest that increased events of drought followed by rewetting may lead to a range of changes in freshwater ecosystems, including nutrient enrichment, increased toxicity following resuspension of contaminants, and higher emission of greenhouse gases to the atmosphere.

While providing protein for a fast-growing human population, the ongoing boom in global aquaculture comes with environmental costs. Particularly, the intense greenhouse gas (GHG) emissions reported for several aquaculture systems are a source of concern. Still, we argue that actual emissions could be multiple times higher than currently thought. Most studies supporting existing estimates solely rely on measurements of water-atmosphere diffusive fluxes of GHG, whereas methane (CH4) and nitrous oxide (N2O) emissions during drainage and refilling and CH4 bubbles emerging from sediments are largely ignored. Yet, abundant evidence for similar aquatic ecosystems suggests that these largely unaccounted emission pathways may be responsible for a large share of annual GHG emissions. Uncertainties from overlooking important emission pathways may have serious consequences, including incorrect advice on mitigation strategies and overly optimistic assessments of the GHG footprint of cultured freshwater fish. To ensure a low-carbon future for global aquaculture, we contend that GHG assessments in fish-farming ponds must extend beyond the focus on diffusive water-atmosphere fluxes and include all emission pathways and possible carbon burial in the sediment. In parallel, we call for a better understanding of the biological, microbiological and physical drivers of aquaculture emissions to effectively support mitigation strategies to minimize the footprint of this nutritionally valuable protein source.

Given the bioremediation potential of peat, natural capping of landfills in wetlands with a “peat cap” could provide a sustainable addition to regular capping methods using basal liners with limited life-spans and sand. It is unknown, however, which initial conditions optimise growth of this “peat cap” on top of a sand layer. Here, we tested the combined effects of topsoil addition (clay or organic soil) and vegetation type (Typha latifolia, T. angustifolia, Stratiotes aloides and submerged spp.) on net ecosystem C exchange and water quality in 18 sandy basins situated in a constructed wetland on top of a landfill. Although the highest net C sequestration rates occurred in Typha stands on sand, due to lower decomposition-related C losses as compared to clay and organic topsoils, vegetation development was slow and its cover was very low (15%) compared to clay (40%) and organic topsoils (70%). As this strongly impeded the build-up of a uniform peat layer, we conclude that, within a restricted time frame, the application of nutrient-rich topsoils is still necessary for sufficient biomass production to accumulate organic material. By recycling local soils, the accompanying initial C loss becomes negligible on a landscape scale.

Water hyacinth stands are known to affect both nutrient concentrations in the water and carbon exchange with the atmosphere. However, both enhanced and reduced greenhouse gas (GHG) emissions have been reported in relation to water hyacinth presence. This controversy may be explained by variation in plant density and rooting. High growth rates indicate its capacity to mobilize and store nutrients in the tissues, and assimilate large amounts of carbon dioxide (CO2). Simultaneously the plant can stimulate methane (CH4) emission. This may occur when plants are rooting in the sediment due to CH4 shuttling from the sediment, through the plant, into the atmosphere. To unravel the potential influences of water hyacinth on nutrient dynamics and GHG fluxes, we performed an experiment in which plant coverage and root access to the sediment were manipulated. Plants reduced phosphorus concentrations in water and pore-water, independent of coverage and rooting, also rooting plants grown at high coverage showed higher plant N:P ratios. CH4 emissions were highest at high coverage and were further increased by rooting, indicating that plant-mediated transport indeed takes place. However, the overall GHG budget in terms of CO2 equivalents still resulted in the water hyacinth vegetation being near neutral, or even a net sink with respect to GHG exchange. The plant-induced enhancement of CH4 emissions suggests that the plant can be an effective CO2-to-biomass-to-CH4 converter. Our results show that plant coverage and water depth – regulating sediment-root contact – should be taken into account when estimating water hyacinth’s effect on GHG emissions.

Methane (CH4) strongly contributes to observed global warming. As natural CH4 emissions mainly originate from wet ecosystems, it is important to unravel how climate change may affect these emissions. This is especially true for ebullition (bubble flux from sediments), a pathway that has long been underestimated but generally dominates emissions. Here we show a remarkably strong relationship between CH4 ebullition and temperature across a wide range of freshwater ecosystems on different continents using multi-seasonal CH4 ebullition data from the literature. As these temperature–ebullition relationships may have been affected by seasonal variation in organic matter availability, we also conducted a controlled year-round mesocosm experiment. Here 4 °C warming led to 51% higher total annual CH4 ebullition, while diffusion was not affected. Our combined findings suggest that global warming will strongly enhance freshwater CH4 emissions through a disproportional increase in ebullition (6–20% per 1 °C increase), contributing to global warming., The impacts of climate change on natural methane (CH4) emissions via ebullition are unclear. Here, using published and experimental multi-seasonal CH4 ebullition data, the authors find a strong relationship between CH4 ebullition and temperature across a wide range of freshwater ecosystems globally.

Small water systems are important hotspots of greenhouse gas (GHG) emission, but estimates are poorly constrained as data are scarce. Small ponds are often constructed in urban areas, where they receive large amounts of nutrients and therefore tend to be highly productive. Here, we investigated GHG emissions, seasonal and diel variation, and net ecosystem production (NEP) from an urban pond. In monthly 24‐h field campaigns during 11 months, diffusive water–atmosphere methane (CH4) and carbon dioxide (CO2) fluxes and CH4 ebullition and oxidation were quantified. With oxygen (O2) measurements, NEP was assessed. The pond was a net GHG source the entire year, with an emission of 3.4 kg CO2 eq m−2 yr−1. The dominant GHG emission pathway was CH4 ebullition (bubble flux, 50%), followed by diffusive emissions of CO2 (38%) and CH4 (12%). Sediment CH4 release was primarily driven by temperature and especially ebullition increased exponentially above a temperature threshold of 15°C. The pond's atmospheric CO2 exchange was not related to NEP or temperature but likely to a high allochthonous carbon (C) input via runoff and anaerobic mineralization of C. We expect urban ponds to show a large increase in GHG emission with increasing temperature, which should be considered carefully when constructing ponds in urban areas. Emissions may partly be counteracted by pond management focusing on a reduction of nutrient and organic matter input. publishedVersion

Hydroelectric reservoirs bury significant amounts of organic carbon (OC) in their sediments. Many reservoirs are characterized by high sedimentation rates, low oxygen concentrations in bottom water and a high share of terrestrially derived OC, and all of these factors have been linked to a high efficiency of OC burial. However, investigations of OC burial efficiency (OCBE, i.e., the ratio between buried and deposited OC) in reservoirs are limited to a few studies, none of which include spatially resolved analyses. In this study we determined the spatial variation in OCBE in a large subtropical reservoir and related it to sediment characteristics. Our results show that the sediment accumulation rate explains up to 92 % of the spatial variability in OCBE, outweighing the effect of other variables, such as OC source and oxygen exposure time. OCBE at the pelagic sites varied from 48 to 86 % (mean 67 %) and decreased towards the dam. At the margins, OCBE was lower (9–17 %) due to the low sediment accumulation in shallow areas. Our data show that the variability in OCBE both along the rivers–dam and the margin–pelagic axes must be considered in whole-reservoir assessments. Combining these results with a spatially resolved assessment of sediment accumulation and OC burial in the studied reservoir, we estimated a spatially resolved mean OC burial efficiency of 57 %. Being the first assessment of OCBE with such a high spatial resolution in a reservoir, these results suggest that reservoirs may bury OC more efficiently than natural lakes.

Shallow lakes are important stocks of carbon (C), nitrogen (N), and phosphorus (P), yet little is known about the influence of alternative primary producer dominance on C stocks or the impact of different macrophyte species on the role of shallow lakes as elemental stocks. We used Yangtze shallow lakes dominated by a monsoon climate as a research site to test the hypothesis that changes in elemental stocks in the water column and sediment after a shift to a phytoplankton-dominated state depend on the macrophyte species originally present. We used a dual approach, combining multi-year monitoring and multi-lake comparisons of lakes that were, at least once, dominated either by fast-decomposing Potamogeton crispus or slow-decomposing P. maackianus . Elemental concentrations generally decreased in the water column and increased in sediment after a shift from P. maackianus presence to absence. Only a minor reallocation of elemental stocks was found in lakes where P. crispus disappeared. This difference is likely caused by a combination of the different biomass and decomposition rates between species, further illustrated by the amount of dead plant material in the sediment after loss of plants. After P. maackianus loss, plant material was found in the sediment in high amounts for up to 6 years, whereas after P. crispus loss the coarse material was absent in

Worldwide the area of free-floating plants is increasing, which can be expected to alter methane (CH4) emissions from aquatic systems in several ways. A large proportion of the CH4 produced may become oxidized below the plants due to the accumulation of CH4 as a result of a decrease in the diffusive water-atmosphere flux and the entrapment of part of the ebullitive CH4, in combination with suitable conditions for methane oxidizing (MOX) bacteria in the aerobic rhizosphere. We used a set of essays to test this hypothesis and to explore the effect of different densities for three widespread free-floating species: Azolla filiculoides, Salvinia natans, and Eichhornia crassipes. The gas exchange velocity, proportion of CH4 bubbles trapped by the plants, occurrence of radial oxygen loss from roots, and MOX rates on the roots were assessed. We subsequently used the outcome of these experiments to parameterize a simple model. With this model we estimated the proportion of the produced CH4 that is oxidized, for different plant species and different densities. We found that in a shallow (1 m) system up to 70% of the CH4 produced may become oxidized as a result of a strong decrease in gas exchange combined with high MOX activity of the rhizosphere microbiome. As floating plants also are likely to increase CH4 production by organic matter production, especially when their presence induces anaerobic conditions, the overall effect on CH4 emission will strongly depend on local conditions. This explains the contrasting effects of floating plants on CH4 emissions in literature as reviewed here. As the effect of floating plants on CH4 emissions, including the high MOX rates we show here, can be substantial, there is an urgent need to consider this impact when assessing greenhouse gas budgets.

Contains fulltext : 195210.pdf (Publisher’s version ) (Open Access) Abstract Temperatures have been rising throughout recent decades and are predicted to rise further in the coming century. Global warming affects carbon cycling in freshwater ecosystems, which both emit and bury substantial amounts of carbon on a global scale. Currently, most studies focus on the effect of warming on overall carbon emissions from freshwater ecosystems, while net effects on carbon budgets may strongly depend on burial in sediments. Here, we tested whether year-round warming increases the production, sedimentation, or decomposition of particulate organic carbon and eventually alters the carbon burial in a typical shallow freshwater system. We performed an indoor experiment in eight mesocosms dominated by the common submerged aquatic plant Myriophyllum spicatum testing two temperature treatments: a temperate seasonal temperature control and a warmed (+4°C) treatment (n = 4). During a full experimental year, the carbon stock in plant biomass, dissolved organic carbon in the water column, sedimented organic matter, and decomposition of plant detritus were measured. Our results showed that year-round warming nearly doubled the final carbon stock in plant biomass from 6.9 ± 1.1 g C in the control treatment to 12.8 ± 0.6 g C (mean ± SE), mainly due to a prolonged growing season in autumn. DOC concentrations did not differ between the treatments, but organic carbon sedimentation increased by 60% from 96 ± 9.6 to 152 ± 16 g C m?2 yaer?1 (mean ± SE) from control to warm treatments. Enhanced decomposition of plant detritus in the warm treatment, however, compensated for the increased sedimentation. As a result, net carbon burial was 40 ± 5.7 g C m?2 year?1 in both temperature treatments when fluxes were combined into a carbon budget model. These results indicate that warming can increase the turnover of organic carbon in shallow macrophyte-dominated systems, while not necessarily affecting net carbon burial on a system scale.

Although previous studies suggest that greenhouse gas (GHG) emissions from reservoir sediment exposed to the atmosphere during drought may be substantial, this process has not been rigorously quantified. Here we determined carbon dioxide (CO 2) and methane (CH 4) emissions from sediment cores exposed to a drying and rewetting cycle. We found a strong temporal variation in GHG emissions with peaks when the sediment was drained (C emissions from permanently wet sediment and drained sediments were, respectively, 251 and 1646 mg m −2 d −1 for CO 2 and 0.8 and 547.4 mg m −2 d −1 for CH 4) and then again during rewetting (C emissions from permanently wet sediment and rewetted sediments were, respectively, 456 and 1725mg m −2 d −1 for CO 2 and 1.3 and 3.1 mg m −2 d −1 for CH 4). To gain insight into the importance of these emissions at a regional scale, we used Landsat satellite imagery to upscale our results to all Brazilian reservoirs. We found that during the extreme drought of 2014-2015, an additional 1299 km 2 of sediment was exposed, resulting in an estimated emission of 8.5 × 10 11 g of CO 2-eq during the first 15 d after the overlying water disappeared and in the first 33 d after rewetting, the same order of magnitude as the year-round GHG emissions of large (∼mean surface water area 454 km 2) Brazilian reservoirs, excluding the emissions from the draw-down zone. Our estimate, however, has high uncertainty, with actual emissions likely higher. We therefore argue that the effects of drought on reservoir GHG emissions merits further study, especially because climate models indicate an increase in the frequency of severe droughts in the future. We recommend incorporation of emissions during drying and rewetting into GHG budgets of reservoirs to improve regional GHG emission estimates and to enable comparison between GHG emissions from hydroelectric and other electricity sources. We also emphasize that peak emissions at the onset of drought and the later rewetting should be quantified to obtain reliable emission estimates. ARTICLE HISTORY Corresponding author: R. Mendonca

Shallow lakes, the most prevalent type of freshwater ecosystems, can shift between clear states with macrophyte dominance and turbid, phytoplankton-dominated states. Such transformations, commonly termed regime shifts, have gained increasing attention in recent decades. Of 1084 studies documenting regime shifts, only 28% investigated the consequences for ecosystem functions and services such as habitat (13%), carbon processing (4%), or nutrient retention (4%). Although there is general consensus that a clear macrophyte state supports a higher diversity of aquatic organisms than a turbid one, the effects of shifts on primary production, carbon burial, greenhouse-gas emissions, and nutrient retention remain ambiguous. Shifts between the two states also affect drinking-water quality and the recreational value of lakes, leading to conflicting management measures and potentially deteriorating natural functions. We call for more comprehensive studies on the effects of regime shifts on ecosystem functions in shallow lakes to guide their sustainable management.

Reservoir sediments exposed to air due to water level fluctuations are strong sources of atmospheric carbon dioxide (CO2). The spatial variability of CO2 fluxes from these drawdown areas are still poorly understood. In a reservoir in southeastern Brazil, we investigated whether CO2 emissions from drawdown areas vary as a function of neighboring land cover types and assessed the magnitude of CO2 fluxes from drawdown areas in relation to nearby water surface. Exposed sediments near forestland (average = 2733 mg C m−2 day−1) emitted more CO2 than exposed sediments near grassland (average = 1261 mg C m−2 day−1), congruent with a difference in organic matter content between areas adjacent to forestland (average = 12.2%) and grassland (average = 10.9%). Moisture also had a significant effect on CO2 emission, with dry exposed sediments (average water content: 13.7%) emitting on average 2.5 times more CO2 than wet exposed sediments (average water content: 23.5%). We carried out a systematic comparison with data from the literature, which indicates that CO2 efflux from drawdown areas globally is about an order of magnitude higher than CO2 efflux from adjacent water surfaces, and within the range of CO2 efflux from terrestrial soils. Our findings suggest that emissions from exposed sediments may vary substantially in space, possibly related to organic matter supply from uphill vegetation, and that drawdown areas play a disproportionately important role in total reservoir CO2 emissions with respect to the area they cover.

Recent studies from temperate lakes indicate that eutrophic systems tend to emit less carbon dioxide (Co-2) and bury more organic carbon (OC) than oligotrophic ones, rendering them CO2 sinks in some cases. However, the scarcity of data from tropical systems is critical for a complete understanding of the interplay between eutrophication and aquatic carbon (C) fluxes in warm waters. We test the hypothesis that a warm eutrophic system is a source of both CO2 and CH4 to the atmosphere, and that atmospheric emissions are larger than the burial of OC in sediments. This hypothesis was based on the following assumptions: (i) OC mineralization rates are high in warm water systems, so that water column CO2 production overrides the high C uptake by primary producers, and (ii) increasing trophic status creates favorable conditions for CH4 production. We measured water-air and sediment-water CO2 fluxes, CH4 diffusion, ebullition and oxidation, net ecosystem production (NEP) and sediment OC burial during the dry season in a eutrophic reservoir in the semiarid northeastern Brazil. The reservoir was stratified during daytime and mixed during nighttime. In spite of the high rates of primary production (4858 +/- 934 mg C m(-2) d(-1)), net heterotrophy was prevalent due to high ecosystem respiration (5209 +/- 992 mg C m(-2) d(-1)). Consequently, the reservoir was a source of atmospheric CO2 (518 +/- 182 mg C m(-2) d(-1)). In addition, the reservoir was a source of ebullitive (17 +/- 10 mg C m(-2) d(-1)) and diffusive CH4 (11 +/- 6 mg C m(-2) d(-1)). OC sedimentation was high (1162 mg C m(-2) d(-1)), but our results suggest that the majority of it is mineralized to CO2 (722 +/- 182 mg C m(-2) d(-1)) rather than buried as OC (440 mg C m(-2) d(-1)). Although temporally resolved data would render our findings more conclusive, our results suggest that despite being a primary production and OC burial hotspot, the tropical eutrophic system studied here was a stronger CO2 and CH4 source than a C sink, mainly because of high rates of OC mineralization in the water column and sediments.

Submerged and emergent wetland plant communities are evaluated for their response to global climate change (GCC), focusing on seagrasses, submerged freshwater plants, tidal marsh plants, freshwater marsh plants and mangroves. Similarities and differences are assessed in plant community responses to temperature increase, CO2 increase, greater UV-B exposure, sea level rise and other expected environmental alterations associated with GCC. Responses to most climate change variables are more similar within submerged plant communities, marine or freshwater, than between submerged vs. emergent plant communities. The submerged plants are most affected by temperature increases and indirect impacts on water clarity. Emergent plant communities (marshes and mangroves) respond most directly to climate change related hydrological alterations. Wetland plant communities overall appear to be adversely impacted by all climate change variables, with the exception of increased CO2 in the atmosphere and the oceans, which in most cases increases photosynthesis. Effects of GCC on all these communities have already been seen with many others predicted, including: shifts in species composition, shifts in range and distribution, and declines in plant species richness. Other effects are associated with specific community types, e.g., salt marsh habitat lost to mangrove incursion, and decreases in submerged macrophyte coverage in lakes and estuaries, exacerbated by eutrophication. Sea level rise poses threats to all aquatic plant community types in the vicinity of the oceans, and changes in weather patterns and salinity will affect many. Overall, losses are likely in all these wetland plant communities yet their species can adapt to GCC to some degree if well managed and protected.

Annual sulfate mass balances have been constructed for four low-lying peat polders in the Netherlands, to resolve the origin of high sulfate concentrations in surface water, which is considered a water quality problem, as indicated amongst others by the absence of sensitive water plant species. Potential limitation of these plants to areas with low sulfate was analyzed with a spatial match-up of two large databases. The peat polders are generally used for dairy farming or nature conservation, and have considerable areas of shallow surface water (mean 16%, range 6-43%). As a consequence of continuous drainage, the peat in these polders mineralizes causing subsidence rates generally ranging between 2 and 10mmy-1. Together with pyrite oxidation, this peat mineralization the most important internal source of sulfate, providing an estimated 96kgSO4ha-1mm-1subsidencey-1. External sources are precipitation and water supplied during summer to compensate for water shortage, but these were found to be minor compared to internal release. The most important output flux is discharge of excess surface water during autumn and winter. If only external fluxes in and out of a polder are evaluated, inputs average 37±9 and exports 169±17kgSha-1y-1. During summer, when evapotranspiration exceeds rainfall, sulfate accumulates in the unsaturated zone, to be flushed away and drained off during the wet autumn and winter. In some polders, upward seepage from early Holocene, brackish sediments can be a source of sulfate. Peat polders export sulfate to the regional water system and the sea during winter drainage. The available sulfate probably only plays a minor role in the oxidation of peat: we estimate that this is less than 10% whereas aerobic mineralization is the most important. Most surface waters in these polders have high sulfate concentrations, which generally decline during the growing season when aquatic sediments are a sink. In the sediment, this sulfur is reduced and binds iron more strongly than phosphorus, which can be released to the overlying water and potentially fuels eutrophication. About 76% of the sampled vegetation-sites exceeded a threshold of 50mgl-1SO4, above which sensitive species, such as Stratiotes aloides, and several species of Potamogeton were significantly less abundant. Thus high sulfate concentrations, mainly due to land drainage and consequent mineralization, appear to affect aquatic plant community composition.

Although some ecosystem responses to climate change are gradual, many ecosystems react in highly nonlinear ways. They show little response until a threshold or tipping point is reached where even a small perturbation may trigger collapse into a state from which recovery is difficult (1). Increasing evidence shows that the critical climate level for such collapse may be altered by conditions that can be managed locally. These synergies between local stressors and climate change provide potential opportunities for proactive management. Although their clarity and scale make such local approaches more conducive to action than global greenhouse gas management, crises in iconic UNESCO World Heritage sites illustrate that such stewardship is at risk of failing.

Lakes are a large source of CO2. An analysis of chemical and physical data from 5,118 boreal lakes reveals that a majority emit CO2 originating primarily from terrestrial sources rather than CO2 produced within the lakes.

Ecological regime shifts and carbon cycling in aquatic systems have both been subject to increasing attention in recent years, yet the direct connection between these topics has remained poorly understood. A four-fold increase in sedimentation rates was observed within the past 50 years in a shallow eutrophic lake with no surface in- or outflows. This change coincided with an ecological regime shift involving the complete loss of submerged macrophytes, leading to a more turbid, phytoplankton- dominated state. To determine whether the increase in carbon (C) burial resulted from a comprehensive transformation of C cycling pathways in parallel to this regime shift, we compared the annual C balances (mass balance and ecosystem budget) of this turbid lake to a similar nearby lake with submerged macrophytes, a higher transparency, and similar nutrient concentrations. C balances indicated that roughly 80% of the C input was permanently buried in the turbid lake sediments, compared to 40% in the clearer macrophyte-dominated lake. This was due to a higher measured C burial efficiency in the turbid lake, which could be explained by lower benthic C mineralization rates. These lower mineralization rates were associated with a decrease in benthic oxygen availability coinciding with the loss of submerged macrophytes. In contrast to previous assumptions that a regime shift to phytoplankton dominance decreases lake heterotrophy by boosting whole-lake primary production, our results suggest that an equivalent net metabolic shift may also result from lower C mineralization rates in a shallow, turbid lake. The widespread occurrence of such shifts may thus fundamentally alter the role of shallow lakes in the global C cycle, away from channeling terrestrial C to the atmosphere and towards burying an increasing amount of C.