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Water solubility of PEDOT:PSS conducting polymer is achieved by PSS at the expense of disturbing the crystallinity and electron mobility of PEDOT. Recently, PEDOT crystallinity and electron mobility have been improved by treating the PEDOT:PSS aqueous solution with 1-ethyl-3-methylimidazolium- (EMIM-) based ionic liquids (IL) EMIM:X. The amount of such improvement varies drastically with the anion X coupled to EMIM cation in the IL. Herein, using umbrella-sampling molecular dynamics simulations on the aqueous solutions of a minimal model of PEDOT:PSS mixed with various EMIM:X ILs, we show that the solvation of each ion in water plays a major role in the free energies of ion binding and exchange. Anions X efficient for the improvement are weakly stabilized by hydration (i.e., hydrophobic) and prefer binding to hydrophobic PEDOT than to hydrophilic EMIM, favoring the ion exchange. In order to fulfill our design principle, a quantitative criterion based on hydration free energy is proposed to select efficient hydrophobic anions X.

Several analytical calculations and computer simulations propose that cylindrical monodispersive rods having an aspect ratio (ratio of length to diameter) greater than 4 can exhibit liquid crystal (LC) ordering. But, recent experiments demonstrated the signature of LC ordering in systems of 4- to 20-base pair (bp) long nucleic acids (NAs) that do not satisfy the shape anisotropy criterion. Mechanisms of end-to-end adhesion and stacking have been proposed to explain this phenomenon. In this study, using all-atom molecular dynamics (MD) simulation, we explicitly verify the end-to-end stacking of double-stranded RNA (dsRNA) and demonstrate the LC ordering at the microscopic level. Using umbrella sampling (US) calculation, we quantify the potential of mean force (PMF) between two dsRNAs for various reaction coordinates (RCs) and compare our results with previously reported PMFs for double-stranded DNA (dsDNA). The PMF profiles demonstrate the anisotropic nature of inter-NA interaction. We find that, like dsDNA, dsRNA also prefers to stack on top of each other while repelling sideways, leading to the formation of supra-molecular-columns that undergo LC ordering at high NA volume fraction (φ). We also demonstrate and quantify the nematic ordering of the RNAs using several hundred nanosecond-long MD simulations that remain almost invariant for different initial configurations and under different external physiological conditions.

We report equilibrium and nonequilibrium molecular dynamics (MD) simulations of two nucleosome core particles (NCPs) stacked with their dyad axes oriented in parallel or antiparallel fashion. From the equilibrium trajectories, we determine the bridging behavior of different histone tails and observe that different sets of histone tails play important roles in the two orientations in stabilizing the NCP stack. While the H4 and H2A tails play important intermediary roles in the parallel stack, the H3 and H2B tails are important in the antiparallel stack. We use steered MD simulations to unstack the two NCPs and find a stark difference in their unstacking pathways. While the average rupture force was found to be higher for the parallel stack, the work done for complete unstacking was similar for both orientations. We use Jarzynski equality to determine the PMF profiles along the unstacking pathway, relate our findings to the behavior of NCP mesophases, and derive insights into the enigmatic nucleosomal organization in the chromatin fiber.

Herein, we explore the strategy of realizing a red-selective thin-film organic photodiode (OPD) by synthesizing a new copolymer with a highly selective red-absorption feature. PCZ-Th-DPP, with phenanthrocarbazole (PCZ) and diketopyrrolopyrrole (DPP) as donor and acceptor units, respectively, was strategically designed/synthesized based on a time-dependent density functional theory calculation, which predicted the significant suppression of the band II absorption of PCZ-Th-DPP due to the extremely efficient intramolecular charge transfer. We demonstrate that the synthesized PCZ-Th-DPP exhibits not only a high absorption coefficient within the red-selective band I region, as theoretically predicted, but also a preferential face-on intermolecular structure in the thin-film state, which is beneficial for vertical charge extraction as an outcome of a glancing incidence X-ray diffraction study. By employing PCZ-Th-DPP as a photoactive layer of Schottky OPD, to fully match its absorption characteristic to the spectral response of the red-selective OPD, we demonstrate a genuine red-selective specific detectivity in the order of 1012 Jones while maintaining a thin active layer thickness of ∼300 nm. This work demonstrates the possibility of realizing a full color image sensor with a synthetic approach to the constituting active layers without optical manipulation.

Metal oxynitrides have been considered recently as emerging electrode materials for supercapacitors. Herein, we converted titanate nanotubes into a series of titanium oxynitride (TiON) nanorods at nitridation temperatures of 800, 900, and 1000 °C in ammonia gas and tested them as supercapacitor electrodes. TiON-800, TiON-900, and TiON-1000 showed capacities of 60, 140, and 71 F g-1, respectively, at a current density of 1 A g-1. However, because of TiON's low capacity, a heterostructure (TiON-900/MnCo2O4) was designed based on the optimized TiON with MnCo2O4 (MCO). The heterostructure TiON-900-MCO and MCO electrode materials showed specific capacities of 515 and 381 F g-1, respectively, at a current density of 1 A g-1. The cycling stability retention of TiON-900 and MCO were 75 and 68%, respectively; moreover, the heterostructure of TiON-900-MCO reached 78% at a current density of 5 A g-1 over 5000 cycles. The increased capacity and sustained cycling stability retention are attributable to the synergistic effect of TiON-900 and MCO. A coin cell (CC)-type symmetric supercapacitor prototype of TiON-900-MCO was fabricated and tested in the voltage range of 0.0-2.0 V in 1 M LiClO4 in propylene carbonate/dimethyl carbonate electrolyte, and a 79% cycling retention capacity of TiON-900-MCO-CC was achieved over 10 000 cycles at a current density of 250 mA g-1. We demonstrated a prototypical single cell of TiON-900-MCO-CC as a sustained energy output by powering a red-light emitting diode that indicated TiON-900-MCo electrode materials' potential application in commercial supercapacitor devices.

Access to protein-inspired polyisocyanates with high molecular weights (MWs) from anionic polymerization of isocyanates is challenging as it requires exceptional livingness. For this purpose, a dimerically self-associated sodium diphenylamide (NaDPA) was introduced as a robust chain-end-protective initiator in the anionic polymerization of n-hexyl isocyanate (HIC) in the absence or presence of sodium tetraphenylborate (NaBPh4) additive. At [NaDPA]0/[NaBPh4]0 = 5, unusual one-half initiation efficiency and one-half order of reaction kinetics were observed. Accordingly, initiator-transfer anionic polymerization (ITAP), a mechanism driven by the dimer of NaDPA ((NaDPA)2) in a dual role is proposed, in which one unimer initiates the polymerization and the other reversibly deactivates the propagating chain end through its repetitive cycles of 1:1 cross-association/dissociation. Living ITAP by NaDPA with NaBPh4 was proven by X-ray crystallography, density functional theory calculation, and quantitative yield of...

Understanding charge transfer processes between graphene and functional materials is crucial from the perspectives of fundamental sciences and potential applications, including electronic devices, photonic devices, and sensors. In this study, we present the charge transfer behavior of graphene and amine-rich polyethyleneimine (PEI) upon CO2 exposure, which was significantly improved after introduction of hygroscopic polyethylene glycol (PEG) in humid air. By blending PEI and PEG, the number of protonated amine groups in PEI was remarkably increased in the presence of water molecules, leading to a strong electron doping effect on graphene. The presence of CO2 gas resulted in a large change in the resistance of PEI/PEG-co-functionalized graphene because of the dramatic reduction of said doping effect, reaching a maximum sensitivity of 32% at 5,000 ppm CO2 and an applied bias of 0.1 V in air with 60% relative humidity at room temperature. This charge transfer correlation will facilitate the development of portable graphene-based sensors for real-time gas detection and the extension of the applications of graphene-based electronic and photonic devices.

The epitaxial synthesis of molybdenum carbide (Mo2C, a 2D MXene material) via chemical conversion of molybdenum disulfide (MoS2) with thermal annealing under CH4 and H2 is reported. The experimental results show that adjusting the thermal annealing period provides a fully converted metallic Mo2C from MoS2 and an atomically sharp metallic/semiconducting hybrid structure via partial conversion of the semiconducting 2D material. Mo2C/MoS2 hybrid junctions display a low contact resistance (1.2 kΩ·μm) and low Schottky barrier height (26 meV), indicating the material’s potential utility as a critical hybrid structural building block in future device applications. Density functional theory calculations are used to model the mechanisms by which Mo2C grows and forms a Mo2C/MoS2 hybrid structure. The results show that Mo2C conversion is initiated at the MoS2 edge and undergoes sequential hydrodesulfurization and carbide conversion steps, and an atomically sharp interface with MoS2 forms through epitaxial growth of ...

A polymeric network of 1-(4-tritylphenyl)urea (TPU) built via layer-by-layer cross-linking polymerization has been proposed to be an excellent mesh equipped with single-molecule-thick pores (i.e., cyclic poly-TPU rings), which can sieve glucose (∼0.7 nm) out of its mixture with urea for hemodialysis applications. Monte Carlo search for the lowest-energy conformation of various sizes of poly-TPU rings unravels the origin of narrow pore size distribution, which is around the sizes of dimer and trimer rings (0.3-0.8 nm). Flexible rings larger than the dimer and trimer rings, in particular tetramer rings, prefer a twisted conformation in the shape of the infinity symbol (∞, which looks like two dimer rings joined together) locked by a hydrogen bond between diphenylurea linker groups facing each other. Translocation energy profiles across these TPU rings reveal their urea-versus-glucose sieving mechanism: glucose is either too large (to enter dimers and twisted tetramers) or too perfectly fit (to exit trimers), leaving only a dimer-sized free space in the ring, whereas smaller-sized urea and water pass through these effective dimer-sized rings (bare dimers, twisted tetramers, and glucose-filled trimers) without encountering a substantial energy barrier or trap.

Magnesium batteries have received attention as a type of post-lithium-ion battery because of their potential advantages in cost and capacity. Among the host candidates for magnesium batteries, orthorhombic α-V2O5 is one of the most studied materials, and it shows a reversible magnesium intercalation with a high capacity especially in a wet organic electrolyte. Studies by several groups during the last two decades have demonstrated that water plays some important roles in getting higher capacity. Very recently, proton intercalation was evidenced mainly using nuclear resonance spectroscopy. Nonetheless, the chemical species inserted into the host structure during the reduction reaction are still unclear (i.e., Mg(H2O)n2+, Mg(solvent, H2O)n2+, H+, H3O+, H2O, or any combination of these). To characterize the intercalated phase, the crystal structure of the magnesium-inserted phase of α-V2O5, electrochemically reduced in 0.5 M Mg(ClO4)2 + 2.0 M H2O in acetonitrile, was solved for the first time by the ab initi...

Anodic water splitting is driven by hydroxide (OH–) adsorption on the catalyst surface and consequent O2 desorption. In this work, various heteroatoms (S/N/B/P) with different electronegativities and oxophilicities are introduced to alter the catalytic activity of reduced graphene oxide (RGO) as a catalyst for the oxygen evolution reaction (OER). It is found that, surprisingly, S-doped RGO outperforms the other RGOs doped with more electropositive or electronegative and more oxophilic heteroatoms, and this effect becomes more prominent after Fe treatment of the respective catalysts. Herein, we evaluate the OER activity of a series of Fe-treated mono-heteroatom (S/N/B/P)-doped RGO (Fe-X-G) catalysts, among which interestingly S-doped RGO catalyst treated with Fe (Fe-S-G) is found to show better OER activity than the well-known active Fe-N-C catalyst, demonstrating the best activity among all of the prepared catalysts, close to that of the state of the art IrO2/C catalyst, along with pronounced long-term st...

The correlation between dimensionality and active sites on deciding the catalytic performance of an MOF catalyst in CO2–epoxide cycloaddition reactions has been studied. Seven In(III) based MOFs built from carboxylic and N-donor ligands possessing different dimensionalities and distinct coordination environments were chosen as solid acid catalysts for this study. The origin of the catalytic activity of an In3+/TBAB bifunctional system in a CO2–PO reaction was studied in detail by performing density functional theory (DFT) calculations at the M06/LACVP**++ level. The energy barrier of the propylene oxide ring opening in the presence of In3+/Br− is 11.5 kcal mol−1, which is significantly lower than those of un-catalyzed (55–63 kcal mol−1) and Br−-catalyzed (19.5 kcal mol−1) reactions, which confirms the importance of the In3+/Br− binary catalytic system in the CO2–epoxide cycloaddition reactions. The one-dimensional (1D) MOF with unsaturated metal centers exhibited higher catalytic activity (PO conversion: 91%, temperature: 50 °C, and time: 12 h) than the two- and three-dimensional MOFs. The roles of dimensionality and unsaturated metal centers in cycloaddition reactions were explained on the basis of the results of activity testing and structural investigations. In addition, a plausible reaction mechanism for the catalytic activity of the 1D MOF was proposed with reference to our structure-density functional theory correlations.

Nitrogen (N)-doped carbon is widely used as an anode material for Li-ion battery (LIB). However, the identification of a specific type of N-configuration responsible for Li-ion storage in N-doped carbon is an elusive topic for LIB. Herein, the N-doped porous carbon nanofibers (N-pCNFs) with various atomic percentages of N and different types of N-configurations are prepared by carbonization of polyacrylonitrile-Zeolitic imidazolate framework-8 fibres at 800, 900, and 1000 °C in N2 atmosphere. The N content of pCNFs-800, N-pCNFs-900, and N-pCNFs-1000 samples are found to be 12.9, 9.4, and 4.8% atomic percentage, respectively. The free-standing/binder-free N-pCNFs-800, N-pCNFs-900, and N-pCNFs-1000 anode electrodes deliver the reversible Li storage capacity of 650, 805, and 520 mAh g−1, respectively at 0.1 C-rate. The ex-situ X-ray diffraction, scanning electron, and transmission electron microscopic results of N-pCNFs-900 indicate the formation of the solid electrolyte interface (SEI) layer. Further, the ex-situ X-ray photoelectron spectroscopy (XPS) analysis of N-pCNFs-900 identifies the presence of LiF, LixPF5-x, LixPOF5-x, Li-O-C, and R-COOLi constituents of the SEI layer and the deconvoluted XPS N1s spectra confirms that the pyridinic-N is responsible for Li-ion storage sites in N-pCNFs.

The porin pores of biological cell membranes enable molecules to be sieved out selectively while water molecules traverse the channel in a single file. Imitating this streaming mechanism is a promising way to create artificial liquid-sieving membranes, but ultrathin molecular pores need to be produced in a large membrane format to be functional under high transmembrane pressures. Here we show that a membrane composed of a covalent molecular mesh can filter mixtures of small molecules in a liquid by the porin-like mechanism. Tetrahedral network formers are polymerized layer-by-layer on a nanoporous substrate to yield a thin layer of a covalent molecular network containing an array of molecular meshes grown by a pore-limited mechanism. Each of the meshes exhibits high water permeability, estimated to be greater than 2500 Lm–2 h–1. Glucose or larger molecules are selectively sieved out while the solvent and solutes smaller than glucose traverse the mesh.

We report the CVD synthesis of a monolayer of MoS2 nanoparticles such that the nanoparticle size was controlled over the range 5–100 nm and the chemical potential of sulfur was modified, both by controlling the hydrogen flow rate during the CVD process. As the hydrogen flow rate was increased, the reaction process of sulfur changed from a “sulfiding” process to a “sulfo-reductive” process, resulting in the growth of smaller MoS2 nanoparticles on the substrates. The size control, crystalline quality, chemical configuration, and distribution uniformity of the CVD-grown monolayer MoS2 nanoparticles were confirmed. The growth of the MoS2 nanoparticles at different edge states was studied using density functional theory calculations to clarify the size-tunable mechanism. A non-volatile memory device fabricated using the CVD-grown size-controlled 5 nm monolayer MoS2 nanoparticles as a floating gate showed a good memory window of 5–8 V and an excellent retention period of a decade.

International audience; A new series of D–A–D-type small-molecule photovoltaic donors are designed and virtually screened before synthesis using time-dependent density functional theory calculations carefully validated against various polymeric and molecular donors. In this series of new design, benzodithiophene is kept as D to achieve the optimum highest-occupied molecular orbital energy level, while thienopyrroledione is initially chosen as A but later replaced by difluorinated benzodiathiazole or its selenide derivative to achieve the optimum band gap. The D–A–D core is end-capped by pyridone units which could not only enhance their self-assembly via hydrogen bonds but also play a role as an acceptor (A′) to form an extended A′–D–A–D–A′ small-molecule donor.

Molecular conformation, intermolecular interaction, and electrode–molecule contacts greatly affect charge transport in molecular junctions and interfacial properties of organic devices by controlling the molecular orbital alignment. Here, we statistically investigated the charge transport in molecular junctions containing self-assembled oligophenylene molecules sandwiched between an Au probe tip and graphene according to various tip-loading forces (FL) that can control the molecular-tilt configuration and the van der Waals (vdW) interactions. In particular, the molecular junctions exhibited two distinct transport regimes according to the FL dependence (i.e., FL-dependent and FL-independent tunneling regimes). In addition, the charge-injection tunneling barriers at the junction interfaces are differently changed when the FL ≤ 20 nN. These features are associated to the correlation effects between the asymmetry-coupling factor (η), the molecular-tilt angle (θ), and the repulsive intermolecular vdW force (Fv...

Poly-3,4-ethylenedioxythiophene:polystyrenesulfonate (PEDOT:PSS) is a water-processable conducting polymer with promise for use in transparent flexible electrodes and thermoelectric devices, but its conductivity is not satisfactory. Its low conductivity is attributed to the formation of hydrophilic/insulating PSS outer layers encapsulating the conducting/hydrophobic p-doped PEDOT cores. Recently a significant conductivity enhancement has been achieved by adding ionic liquid (IL). It is believed that ion exchange between PEDOT:PSS and IL components helps PEDOT to decouple from PSS and to grow into large-scale conducting domains, but the exact mechanism is still under debate. Here we show through free energy calculations using density functional theory on a minimal model that the most efficient IL pairs are the least tightly bound ones with the lowest binding energies, which would lead to the most efficient ion exchange with PEDOT:PSS. This spontaneous ion exchange followed by nanophase segregation between PEDOT and PSS, with formation of a π-stacked PEDOT aggregate decorated by IL anions, is also supported by molecular dynamics performed on larger PEDOT:PSS models in solution. We also show that the most efficient IL anions would sustain the highest amount of charge carriers uniformly distributed along the PEDOT backbone to further enhance the conductivity, providing that they remain in the PEDOT domain after the ion exchange. Hence, our design principle is that the high-performance IL should induce not only an efficient ion exchange with PEDOT:PSS to improve the PEDOT morphology (to increase mobility) but also a uniform high-level p-doping of PEDOT (to enhance intrinsic conductivity). Based on this principle, a promising (electron-withdrawing, but bulky, soft, and hydrophobic) new IL pair is proposed.

A fullerene derivative with five hydroxyphenyl groups attached around a pentagon, (4-HOC6H4)5HC60 (1), has shown an asymmetric current–voltage (I–V) curve in a conducting atomic force microscopy experiment on gold. Such molecular rectification has been ascribed to the asymmetric distribution of frontier molecular orbitals over its shuttlecock-shaped structure. Our nonequilibrium Green’s function (NEGF) calculations based on density functional theory (DFT) indeed exhibit an asymmetric I–V curve for 1 standing up between two Au(111) electrodes, but the resulting rectification ratio (RR ∼ 3) is insufficient to explain the wide range of RR observed in experiments performed under a high bias voltage. Therefore, we formulate a hypothesis that high RR (>10) may come from molecular orientation switching induced by a strong electric field applied between two electrodes. Indeed, molecular dynamics simulations of a self-assembled monolayer of 1 on Au(111) show that the orientation of 1 can be switched between standi...

Recent experiments have shown that short double-stranded DNA (dsDNA) fragments having six- to 20-base pairs exhibit various liquid crystalline phases. This violates the condition of minimum molecular shape anisotropy that analytical theories demand for liquid crystalline ordering. It has been hypothesized that the liquid crystalline ordering is the result of end-to-end stacking of dsDNA to form long supramolecular columns which satisfy the shape anisotropy criterion necessary for ordering. To probe the thermodynamic feasibility of this process, we perform molecular dynamics simulations on ultrashort (four base pair long) dsDNA fragments, quantify the strong end-to-end attraction between them, and demonstrate that the nematic ordering of the self-assembled stacked columns is retained for a large range of temperature and salt concentration.

Complex formation between lithium (Li(+)) ions and electrolyte molecules would affect the ionic conductivity through the electrolyte in lithium-ion batteries (LIBs). We hence revisit the solvation number of Li(+) in the most commonly used ethylene carbonate (EC) electrolyte. The solvation number n of Li(+)(EC)n in the first solvation shell of Li(+) is estimated on the basis of the free energy calculated by the density functional theory combined with a hybrid solvation model where the explicit solvation shell of Li(+) is immersed in a free volume of an implicit bulk solvent. This new hybrid solvation (implicit and explicit) model predicts the most probable solvation number (n = 4) and solvation free energy (-91.3 kcal mol(-1)) of Li(+) in a good agreement with those predicted by calculations employing simpler solvation models (either implicit or explicit). The desolvation (n = 2) of Li(0)(EC)n upon reduction near anodes is also well described with this new hybrid model.

International audience; Low-band-gap push-pull copolymers are promising donor materials for bulk heterojunction organic solar cells. One of the best push-pull copolymers are composed of bridged dithiophene pushing units and benzothiadiazole (BT) pulling units, but BT has no proper position to accommodate alkyl side chains introduced to enhance the solubility of the resulting copolymers in organic solvents. On the other hand, N-alkylthienopyrroledione (TPD), which has an alkyl side chain attached to its pyrrole moiety, has been combined with various bridged dithiophene pushing units to give high-solubility donor polymers whose power conversion efficiencies are higher than those of the BT-based polymers especially after a morphology control. However, our well-validated time-dependent density functional theory calculation on the intrinsic (single-chain) electronic structure, which has been proved powerful to estimate the efficiency, gives a contradictory prediction that both polymers would show essentially the same efficiency. Intrigued by this, we subsequently perform density functional theory calculations on their π-stacked-pair models in a number of stacking configurations and conclude that the enhanced performance of the TPD-based polymers is ascribed to their enhanced inter-chain interaction resulting from their enhanced dipole moments in the push-pull direction. Enhanced morphological ordering (π-stacking and π-conjugation) in their solid films, which is not considered in electronic-structure calculations, would reduce the band gap (as proved by the low-energy shoulders in UV/vis absorption spectra), improve the charge transfer (as shown by the calculated transfer integral, transfer rate, and hole mobility), and enhance the power conversion efficiencies (as observed after a morphology control).; -

The molecular ordering of aqueous conducting polymers is controlled using a rational method. By introducing various ionic liquids, which have designed electrostatic interactions to PEDOT:PSS solutions, the evolution of the molecular ordering of the PEDOT is manipulated. Consequently, highly ordered nanostructures are achieved with a reduced π-π stacking distance of ≈3.38 A and, thus, a maximum σdc of ≈2100 S cm-1 .

The effects of graphene n-doping on a metal-graphene contact are studied in combination with 1D edge contacts, presenting a record contact resistance of 23 Ω μm at room temperature (19 Ω μm at 100 K). This contact scheme is applied to a graphene-perovskite hybrid photodetector, significantly improving its performance (0.6 → 1.8 A W(-1) in photoresponsivity and 3.3 × 10(4) → 5.4 × 10(4) Jones in detectivity).