11 results on '"Bryan S. Matsuura"'
Search Results
2. Recent Advances in Photoredox Catalysis Enabled Functionalization of α-Amino Acids and Peptides: Concepts, Strategies and Mechanisms
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Markus D. Kärkäs, Jian-Quan Liu, Andrey Shatskiy, and Bryan S. Matsuura
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chemistry.chemical_classification ,Bioconjugation ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Photoredox catalysis ,Peptide ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Small molecule ,Catalysis ,0104 chemical sciences ,Amino acid ,Surface modification ,Amino acid residue - Abstract
The selective modification of α-amino acids and peptides constitutes a pivotal arena for accessing new peptide-based materials and therapeutics. In recent years, visible light photoredox catalysis has appeared as a powerful platform for the activation of small molecules via single-electron transfer events, allowing previously inaccessible reaction pathways to be explored. This review outlines the recent advances, mechanistic underpinnings, and opportunities of applying photoredox catalysis to the expansion of the synthetic repertoire for the modification of specific amino acid residues.1 Introduction2 Visible-Light-Mediated Functionalization of α-Amino Acids2.1 Decarboxylative Functionalization Involving Redox-Active Esters2.2 Direct Decarboxylative Coupling Strategies2.3 Hypervalent Iodine Reagents2.4 Dual Photoredox and Transition-Metal Catalysis2.5 Amination and Deamination Strategies3 Photoinduced Peptide Diversification3.1 Gese-Type Bioconjugation Methods3.2 Peptide Macrocyclization through Photoredox Catalysis3.3 Biomolecule Conjugation through Arylation3.4 C–H Functionalization Manifolds4 Conclusions and Outlook
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- 2019
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3. PHOTACs enable optical control of protein degradation
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Dirk Trauner, Michele Pagano, Marleen Bérouti, Martin Reynders, Bryan S. Matsuura, Daniele Simoneschi, and Antonio Marzio
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Light ,Optical Phenomena ,Proteolysis ,Tacrolimus Binding Protein 1A ,02 engineering and technology ,Protein degradation ,010402 general chemistry ,Biochemistry ,01 natural sciences ,03 medical and health sciences ,Ubiquitin ,Cell Line, Tumor ,medicine ,Humans ,Research Articles ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,biology ,medicine.diagnostic_test ,Photoswitch ,010405 organic chemistry ,Chemistry ,SciAdv r-articles ,021001 nanoscience & nanotechnology ,Ligand (biochemistry) ,0104 chemical sciences ,Ubiquitin ligase ,FKBP ,Proteasome ,Biophysics ,biology.protein ,0210 nano-technology ,Research Article - Abstract
We present a modular approach to control the small molecule–mediated degradation of cellular proteins of interest using light., PROTACs (PROteolysis TArgeting Chimeras) are bifunctional molecules that target proteins for ubiquitylation by an E3 ligase complex and subsequent degradation by the proteasome. They have emerged as powerful tools to control the levels of specific cellular proteins. We now introduce photoswitchable PROTACs that can be activated with the spatiotemporal precision that light provides. These trifunctional molecules, which we named PHOTACs (PHOtochemically TArgeting Chimeras), consist of a ligand for an E3 ligase, a photoswitch, and a ligand for a protein of interest. We demonstrate this concept by using PHOTACs that target either BET family proteins (BRD2,3,4) or FKBP12. Our lead compounds display little or no activity in the dark but can be reversibly activated with different wavelengths of light. Our modular approach provides a method for the optical control of protein levels with photopharmacology and could lead to new types of precision therapeutics that avoid undesired systemic toxicity.
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- 2020
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4. Oxidative Approach Enables Efficient Access to Cyclic Azobenzenes
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Martin Reynders, Tongil Ko, Katharina Hüll, Martin S. Maier, Bryan S. Matsuura, Dirk Trauner, Philipp Leippe, and Lukas Schäffer
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Magnetic Resonance Spectroscopy ,Photoisomerization ,Substituent ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Functional importance ,Rapid access ,Oxidative cyclization ,Chemistry ,General Chemistry ,Photochemical Processes ,Combinatorial chemistry ,Azocines ,0104 chemical sciences ,Azobenzene ,Cyclization ,Spectrophotometry, Ultraviolet ,Thermal relaxation ,Azo Compounds ,Oxidation-Reduction ,Copper - Abstract
Azobenzenes are versatile photoswitches that have found widespread use in a variety of fields, ranging from photo-pharmacology to the material sciences. In addition to regular azobenzenes the cyclic diazocines have recently emerged. Although diazocines have fascinating conformational and photophysical properties, their use has been limited by their synthetic accessibility. Herein, we present a general, high-yielding protocol that relies on the oxidative cyclization of diani-lines. In combination with a modular substrate synthesis, it allows for rapid access to diversely functionalized diazocines on gram scales. Our work systematically explores substituent effects on the photoisomerization and thermal relaxation of diazocines. It will enable their incorporation into a wide variety of functional molecules, unlocking the full potential of these emerging photoswitches. The method can be applied to the synthesis of a new cyclic azobenzene with a nine-membered central ring and distinct properties.
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- 2019
5. Sign Inversion in Photopharmacology: Incorporation of Cyclic Azobenzenes in Photoswitchable Potassium Channel Blockers and Openers
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Julie B. Trads, Nicole Görldt, Katharina Hüll, Nikolaj Klöcker, C. David Weaver, Timm Fehrentz, Dirk Trauner, David M. Barber, Bryan S. Matsuura, Krystian A. Kozek, and Laura Laprell
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Patch-Clamp Techniques ,Photoisomerization ,Light ,Potassium ,chemistry.chemical_element ,Action Potentials ,010402 general chemistry ,01 natural sciences ,photoswitchable molecules ,Catalysis ,Photochromism ,Isomerism ,medicine ,Potassium Channel Blockers ,Humans ,photopharmacology ,G protein-coupled inwardly-rectifying potassium channel ,010405 organic chemistry ,Chemistry ,Lidocaine ,Potassium channel blocker ,Biological activity ,General Chemistry ,potassium channels ,Combinatorial chemistry ,Potassium channel ,0104 chemical sciences ,HEK293 Cells ,G Protein-Coupled Inwardly-Rectifying Potassium Channels ,Cyclization ,Drug Design ,GIRK channels ,Thermodynamics ,diazocines ,Azo Compounds ,medicine.drug - Abstract
Photopharmacology relies on ligands that change their pharmacodynamics upon photoisomerization. Many of these ligands are azobenzenes that are thermodynamically more stable in their elongated trans-configuration. Often, they are biologically active in this form and lose activity upon irradiation and photoisomerization to their cis-isomer. Recently, cyclic azobenzenes, so-called diazocines, have emerged, which are thermodynamically more stable in their bent cis-form. Incorporation of these switches into a variety of photopharmaceuticals could convert dark-active ligands into dark-inactive ligands, which is preferred in most biological applications. This “pharmacological sign-inversion” is demonstrated for a photochromic blocker of voltage-gated potassium channels, termed CAL, and a photochromic opener of G protein-coupled inwardly rectifying potassium (GIRK) channels, termed CLOGO.
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- 2019
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6. Unravelling Photochemical Relationships Among Natural Products from Aplysia dactylomela
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Regina de Vivie-Riedle, Dirk Trauner, Patrick Kölle, Robin Meier, and Bryan S. Matsuura
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biology ,010405 organic chemistry ,Stereochemistry ,Chemistry ,General Chemical Engineering ,Regioselectivity ,General Chemistry ,010402 general chemistry ,Photochemistry ,Aplysia dactylomela ,biology.organism_classification ,01 natural sciences ,Cycloaddition ,0104 chemical sciences ,lcsh:Chemistry ,Long wavelength ,lcsh:QD1-999 ,Structural isomer ,Ladderane ,Research Article - Abstract
Aplydactone (1) is a brominated ladderane sesquiterpenoid that was isolated from the sea hare Aplysia dactylomela together with the chamigranes dactylone (2) and 10-epi-dactylone (3). Given the habitat of A. dactylomela, it seems likely that 1 is formed from 2 through a photochemical [2 + 2] cycloaddition. Here, we disclose a concise synthesis of 1, 2, and 3 that was guided by excited state theory and relied on several highly stereoselective transformations. Our experiments and calculations confirm the photochemical origin of 1 and explain why it is formed as the sole isomer. Irradiation of 3 with long wavelength UV light resulted in a [2 + 2] cycloaddition that proceeded with opposite regioselectivity. On the basis of this finding, it seems likely that the resulting regioisomer, termed “8-epi-isoaplydactone”, could also be found in A. dactylomela., We report the photochemistry, supported by excited state theory, of the brominated chamigranes dactylone and 10-epi-dactylone in the biomimetic synthesis of aplydactone and its isomer, which we anticipate is a natural product.
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- 2016
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7. Formation and trapping of azafulvene intermediates derived from manganese-mediated oxidative malonate coupling
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Laura Furst, Jagan M. R. Narayanam, Bryan S. Matsuura, Verner A. Lofstrand, and Corey R. J. Stephenson
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010405 organic chemistry ,Radical ,Organic Chemistry ,Alkylation ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Biochemistry ,Medicinal chemistry ,Dimethyl malonate ,Article ,Coupling reaction ,0104 chemical sciences ,Acetic acid ,chemistry.chemical_compound ,Malonate ,Nucleophile ,chemistry ,Drug Discovery ,Oxidative coupling of methane - Abstract
The one-pot, three-component, coupling reaction of indoles/pyrroles, dimethyl malonate, and acetic acid was performed using Mn(III) acetate as an oxidant. In the presence of Mn(OAc)3, indole-2, and indole-3-carbonyl compounds were alkylated at the 3- and 2- positions, respectively, with subsequent oxidation and nucleophilic capture occurring at the newly formed benzylic carbon. In contrast, oxidation of 2- and 3-indole carboxylic acids afforded the corresponding 2-oxindol-3-ylidenes and 3-oxindol-2-ylidenes. The reaction conditions, scope, and mechanism are discussed herein.
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- 2016
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8. Transition-metal catalyzed valorization of lignin: the key to a sustainable carbon-neutral future
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Bryan S. Matsuura, Markus D. Kärkäs, Corey R. J. Stephenson, Gabriel Magallanes, and Timothy M. Monos
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Molecular Structure ,010405 organic chemistry ,Commodity chemicals ,Organic Chemistry ,chemistry.chemical_element ,Biomass ,010402 general chemistry ,Biorefinery ,Lignin ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Carbon neutrality ,Biofuel ,Biofuels ,Transition Elements ,Organic chemistry ,Biochemical engineering ,Physical and Theoretical Chemistry ,Carbon - Abstract
The development of a sustainable, carbon-neutral biorefinery has emerged as a prominent scientific and engineering goal of the 21st century. As petroleum has become less accessible, biomass-based carbon sources have been investigated for utility in fuel production and commodity chemical manufacturing. One underutilized biomaterial is lignin; however, its highly crosslinked and randomly polymerized composition have rendered this biopolymer recalcitrant to existing chemical processing. More recently, insight into lignin's molecular structure has reinvigorated chemists to develop catalytic methods for lignin depolymerization. This review examines the development of transition-metal catalyzed reactions and the insights shared between the homogeneous and heterogeneous catalytic systems towards the ultimate goal of valorizing lignin to produce value-added products.
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- 2016
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9. Synthesis of Resveratrol Tetramers via a Stereoconvergent Radical Equilibrium
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Ryan A. Harding, Mariia S. Kirillova, Jean-Philippe R. Chauvin, Derek A. Pratt, Bryan S. Matsuura, Mitchell H. Keylor, Oliver J. Fischer, Corey R. J. Stephenson, Xu Zhu, and Markus Griesser
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Stereochemistry ,Radical ,Radical polymerization ,Oxidative phosphorylation ,Resveratrol ,010402 general chemistry ,Cleavage (embryo) ,01 natural sciences ,Article ,chemistry.chemical_compound ,Stilbenes ,Indolequinones ,Benzofurans ,Biological Products ,Multidisciplinary ,010405 organic chemistry ,Resorcinols ,Small molecule ,Quinone methide ,Carbon ,0104 chemical sciences ,chemistry ,Dimerization ,Oxidation-Reduction ,Biogenesis - Abstract
Catching a break in polyphenol synthesis Chemical synthesis is usually rather different from playing with a modeling kit. If two large fragments of a molecule are not properly oriented, it is not typically possible to break them apart, rotate one, and then paste them back together. Yet that is precisely the trick that Keylor et al. used to synthesize two plant-derived polyphenols. Resveratrol forms a variety of dimers, trimers, and tetramers. When one central carbon-carbon bond links the fragments, it is weak enough to break spontaneously and reversibly at room temperature. The authors leveraged this equilibrium to generate an efficient route to two of the tetramers, nepalensinol B and vateriaphenol C. Science , this issue p. 1260
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- 2016
10. Photocatalytic Oxidation of Lignin Model Systems by Merging Visible-Light Photoredox and Palladium Catalysis
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Markus D. Kärkäs, Bryan S. Matsuura, Irene Bosque, and Corey R. J. Stephenson
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010405 organic chemistry ,Organic Chemistry ,technology, industry, and agriculture ,food and beverages ,chemistry.chemical_element ,010402 general chemistry ,Photochemistry ,complex mixtures ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,chemistry ,Photocatalysis ,Lignin ,Physical and Theoretical Chemistry ,Visible spectrum ,Palladium - Abstract
Lignin valorization has long been recognized as a sustainable solution for the renewable production of aromatic compounds. Two-step oxidation/reduction strategies, whereby the first oxidation step is required to “activate” lignin systems for controlled fragmentation reactions, have recently emerged as viable routes toward this goal. Herein we describe a catalytic protocol for oxidation of lignin model systems by combining photoredox and Pd catalysis. The developed dual catalytic protocol allowed the efficient oxidation of lignin model substrates at room temperature to afford the oxidized products in good to excellent yields.
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- 2016
11. Chemistry and Biology of Resveratrol-Derived Natural Products
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Bryan S. Matsuura, Mitchell H. Keylor, and Corey R. J. Stephenson
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medicine.medical_specialty ,Antineoplastic Agents ,Review ,Consumption (sociology) ,Biology ,Resveratrol ,Health benefits ,010402 general chemistry ,01 natural sciences ,Antioxidants ,Chd mortality ,chemistry.chemical_compound ,Environmental health ,Epidemiology ,Stilbenes ,medicine ,French paradox ,Chemistry (relationship) ,Benzofurans ,2. Zero hunger ,Biological Products ,010405 organic chemistry ,Anti-Inflammatory Agents, Non-Steroidal ,General Chemistry ,3. Good health ,0104 chemical sciences ,chemistry ,Biochemistry ,Models, Chemical ,Life expectancy - Abstract
Since the dawn of the 20th century, the average life expectancy at birth has nearly doubled due to advances in science and medicine. As medical records grew more reliable, it became apparent that, while overall life span was increasing, there were significant epidemiological differences between geographical regions, with people from countries such as Japan, France, and Switzerland enjoying longer life expectancy as compared to other regions of the world. The causative factors for these disparities in both mortality and morbidity have been attributed not only to genetics but also to the contributions of highly variable lifestyle and environmental influences.1 Barring differences in modernization and public health policy, diet is the most significant epidemiological factor cross-culturally and is thought to be a profoundly important contributor to health and overall well-being. Prior to the early 1990s, there was a general consensus in support of the belief that moderate alcohol consumption significantly lowered the risk of coronary heart disease (CHD).2 However, it was not clear whether this was true of all alcoholic beverages or which constituents in the drinks were responsible for these beneficial properties.3 In 1992, Siemann and Creasy4 reported that resveratrol (1) was present in significant concentrations in red wine, drawing attention to the fact that it was also an active principle found in Japanese and Chinese folk medicines used to treat ailments related to the liver, skin, heart, and lipid metabolism.5 The discovery of resveratrol in wine was particularly timely; although the correlation between high fat and cholesterol consumption and coronary heart disease was widely accepted,6 certain populations, namely the French, had a low incidence of CHD mortality despite a diet and lifestyle that exposed these individuals to elevated risk factors.7 The cardioprotective ability of resveratrol, its oligomers, along with other phytochemicals present in wine, appeared to resolve this “French Paradox” and advanced the notion that a chemical constituent of one’s diet could be beneficial to health.8 Although the reality of the French Paradox remains contentious,9,10 research into the health benefits of resveratrol has exploded as a result. The reported biological activities of resveratrol are numerous, including antioxidant,11 anticancer,12 antidiabetic,13,14 cardioprotective,15 and even antiaging properties,16 to name a few. The body of literature regarding the biological activity of resveratrol is expansive and beyond of the scope of this review. We invite the readers to the following resources for background on this exciting and ongoing field of research.17−21 Despite its enormous popularity, resveratrol is but a single compound in a large, structurally diverse class of oligomeric stilbenoids that are present in the wines and foods that we consume.22,23 Until recently, access to these oligomeric natural products was limited to isolation from natural sources, which severely hampered their biological evaluation. The scientific interest in resveratrol has undoubtedly instigated the renewed attention in these compounds by the chemical community. Advances in the characterization, isolation techniques, and synthesis of these natural products have significantly enriched our understanding of their chemistry and biology. Our review seeks to document the history and recent progress in the isolation, chemical synthesis, and biology of this fascinating class of phytochemicals, while providing new insight on the biosynthesis and future prospects for the field as a whole.
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- 2015
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