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RNA splicing and spliceosome assembly in eukaryotes occur mainly during transcription. However, co-transcriptional splicing has not yet been explored in plants. Here, we built transcriptomes of nascent chromatin RNAs in Arabidopsis thaliana and showed that nearly all introns undergo co-transcriptional splicing, which occurs with higher efficiency for introns in protein-coding genes than for those in noncoding RNAs. Total intron number and intron position are two predominant features that correlate with co-transcriptional splicing efficiency, and introns with alternative 5′ or 3′ splice sites are less efficiently spliced. Furthermore, we found that mutations in genes encoding trans-acting proteins lead to more introns with increased splicing defects in nascent RNAs than in mature RNAs, and that introns with increased splicing defects in mature RNAs are inefficiently spliced at the co-transcriptional level. Collectively, our results not only uncovered widespread co-transcriptional splicing in Arabidopsis but also identified features that may affect or be affected by co-transcriptional splicing efficiency.

The phytohormone abscisic acid (ABA) and the Polycomb group proteins have key roles in regulating plant growth and development; however, their interplay and underlying mechanisms are not fully understood. Here, we identified an Arabidopsis (Arabidopsis thaliana) nodulin homeobox (AtNDX) protein as a negative regulator in the ABA signaling pathway. AtNDX mutants are hypersensitive to ABA, as measured by inhibition of seed germination and root growth, and the expression of AtNDX is downregulated by ABA. AtNDX interacts with the Polycomb Repressive Complex1 (PRC1) core components AtRING1A and AtRING1B in vitro and in vivo, and together, they negatively regulate the expression levels of some ABA-responsive genes. We identified ABA-INSENSITIVE (ABI4) as a direct target of AtNDX. AtNDX directly binds the downstream region of ABI4 and deleting this region increases the ABA sensitivity of primary root growth. Furthermore, ABI4 mutations rescue the ABA-hypersensitive phenotypes of ndx mutants and ABI4-overexpressing plants are hypersensitive to ABA in primary root growth. Thus, our work reveals the critical functions of AtNDX and PRC1 in some ABA-mediated processes and their regulation of ABI4.

PROTEIN PHOSPHATASE4 (PP4) is a highly conserved Ser/Thr protein phosphatase found in yeast, plants, and animals. The composition and functions of PP4 in plants are poorly understood. Here, we uncovered the complexity of PP4 composition and function in Arabidopsis (Arabidopsis thaliana) and identified the composition of one form of PP4 containing the regulatory subunit PP4R3A. We show that PP4R3A, together with one of two redundant catalytic subunit genes, PROTEIN PHOSPHATASE X (PPX)1 and PPX2, promotes the biogenesis of microRNAs (miRNAs). PP4R3A is a chromatin-associated protein that interacts with RNA polymerase II and recruits it to the promoters of miRNA-encoding (MIR) genes to promote their transcription. PP4R3A likely also promotes the cotranscriptional processing of miRNA precursors, because it recruits the microprocessor component HYPONASTIC LEAVES1 to MIR genes and to nuclear dicing bodies. Finally, we show that hundreds of introns exhibit splicing defects in pp4r3a mutants. Together, this study reveals roles for Arabidopsis PP4 in transcription and nuclear RNA metabolism.

Recently reported adenine base editors (ABEs) exhibit powerful potential for targeted gene correction as well as developing gain-of-function mutants and novel germplasms for both gene function studies and crop breeding. However, editing efficiency varies significantly among different target sites. Here, we investigated the activities of three evolved E. coli adenosine deaminase TadA variants (TadA8e, TadA8.17, and TadA8.20) side-by-side in transgenic rice. We found that TadA8e outperforms TadA8.17 and TadA8.20, and induces efficient A-to-G conversion at all tested sites in the rice genome, including those that were uneditable by ABE7.10 in our previous experiments. Furthermore, V82S/Q154R mutations were incorporated into TadA8e, resulting in a new variant that we named TadA9. Our data show that TadA9 is broadly compatible with CRISPR/SpCas9, CRISPR/SpCas9-NG, and CRISPR/SpRY, as well as CRISPR/ScCas9 nickase systems, achieving comparable or enhanced editing in a larger editing window at diverse PAM sites as compared with TadA8e. Finally, TadA9 was used to simultaneously install novel SNPs in four endogenous herbicide target genes in the commercial rice cultivar Nangeng 46 for potential field application in weed control. Collectively, we successfully generated a series of novel ABEs that can efficiently edit adenosines in the rice genome. Our findings suggest that TadA9 and TadA8e have great potentials in the development of plant base editors and crop molecular breeding.

Recently developed CRISPR-mediated base editors, which enable the generation of numerous nucleotide changes in target genomic regions, have been widely adopted for gene correction and generation of crop germplasms containing important gain-of-function genetic variations. However, to engineer target genes with unknown functional SNPs remains challenging. To address this issue, we present here a base-editing-mediated gene evolution (BEMGE) method, employing both Cas9n-based cytosine and adenine base editors as well as a single-guide RNA (sgRNA) library tiling the full-length coding region, for developing novel rice germplasms with mutations in any endogenous gene. To this end, OsALS1 was artificially evolved in rice cells using BEMGE through both Agrobacterium-mediated and particle-bombardment-mediated transformation. Four different types of amino acid substitutions in the evolved OsALS1, derived from two sites that have never been targeted by natural or human selection during rice domestication, were identified, conferring varying levels of tolerance to the herbicide bispyribac-sodium. Furthermore, the P171F substitution identified in a strong OsALS1 allele was quickly introduced into the commercial rice cultivar Nangeng 46 through precise base editing with the corresponding base editor and sgRNA. Collectively, these data indicate great potential of BEMGE in creating important genetic variants of target genes for crop improvement.

In this work, Ga2O3 thin films were grown on Al2O3 (0001) substrate by radio frequency magnetron sputtering. The influence of sputtering power on crystalline structure, morphology, transmittance, band gap, and photoluminescence were investigated in detail. X-ray diffraction results showed that the β-Ga2O3 films were oriented along ( 2 ¯ 01 ) plane, and the crystalline quality improved with increasing sputtering power. Scanning electron microscope images revealed that the proportion of large-size grain increased with increasing sputtering power. The β-Ga2O3 films displayed very high transmittance close to 100% in visible region. Photoluminescence spectra showed that all the films exhibited intense blue and green emission centered at approximately 430 nm and 550 nm originated from the donor-acceptor pair recombination.

β-Ga2O3 films have been obtained by thermal annealing of amorphous thin films that were deposited by radio frequency magnetron sputtering. The influence of deposition pressure on the properties of the β-Ga2O3 films was investigated. The structural and optical properties of the β-Ga2O3 films were evaluated using X-ray diffraction, X-ray photoelectron spectroscopy, scanning electron microscopy and optical spectrophotometric measurements. The full width at half maximum of β-Ga2O3 (600) X-ray diffraction peaks decreased firstly and then increased with increasing deposition pressure. A similar variation tendency was observed for the optical band gap of the β-Ga2O3 films. The reasons were attributed to joint action of the atoms' diffusion ability on the surface and oxygen partial pressure with deposition pressure. With increasing pressure, sputtered target species collided more and lacked energy to diffuse leading to poorly crystallized films. With high deposition pressure, oxygen partial pressure also increased in the deposition chamber, thus crystalline quality was improved due to the decrease in oxygen vacancies in the film, which was confirmed by investigating O 1s and Ga 3d core levels using X-ray photoelectron spectroscopy.

Due to their high theoretical capacities and high energy densities, metal fluorides have attracted significant attention as cathodes for lithium-ion batteries. However, thus far, their low conductivities have limited the performance of these materials. In this work, the Fe(1−x)Co x F3/MWCNT (multi-walled carbon nanotube) nanocomposites (x = 0, 0.02, 0.04 and 0.06) are obtained by an in situ solvothermal method with Co-doping and wrapping of the MWCNTs. The results indicate that Co-doping can adjust the crystal structure, decrease the band gaps and enhance the Li+ diffusion coefficient of FeF3. Additionally, the wrapped network of MWCNTs enhances the conductivity of the composites and improves their electrochemical performances. The Fe0.96Co0.04F3/MWCNT nanocomposites exhibit a high initial discharge capacity of 217.0 mAh g−1 at rate of 0.2 C within the potential range of 2.0–4.5 V, which is much higher than that of the FeF3/MWCNT counterpart (192.1 mAh g−1). The discharge capacities of these two samples remain at 187.9 and 160.7 mAh g−1 even after 50 cycles. Meanwhile, the EIS results reveal that both the Li+ charge transfer resistance (R ct = 31.25 Ω) and Li+ diffusion coefficient (1.40 × 10−11 cm2 s−1) are satisfactory from Co-doping and the in situ wrapping of the MWCNTs.

ᅟ Ag-coated spherical Li4Ti5O12 composite was successfully synthesized via a sol-gel-assisted hydrothermal method using an ethylene glycol and silver nitrate mixture as the precursor, and the influence of the Ag coating contents on the electrochemical properties of its was extensively investigated. X-ray diffraction (XRD) analysis indicated that the Ag coating does not change the spinel structure of Li4Ti5O12. The electrochemical impedance spectroscopy (EIS) analyses demonstrated that the excellent electrical conductivity of the Li4Ti5O12/Ag resulted from the presence of the highly conducting silver coating layer. Additionally, the nano-thick silver layer, which was uniformly coated on the particles, significantly improved this material’s rate capability. As a consequence, the silver-coated micron-sized spherial Li4Ti5O12 exhibited excellent electrochemical performance. Thus, with an appropriate silver content of 5 wt.%, the Li4Ti5O12/Ag delivered the highest capacity of 186.34 mAh g−1 at 0.5C, which is higher than that of other samples, and maintained 92.69% of its initial capacity at 5C after 100 cycles. Even at 10C after 100 cycles, it still had a capacity retention of 89.17%, demonstrating remarkable cycling stability. Trial registration ISRCTN NARL-D-17-00568

CRISPR technologies enabling precise genome manipulation are valuable for gene function studies and molecular crop breeding. However, the requirement of a protospacer adjacent motif (PAM), such as NGG and TTN, for Cas protein recognition restricts the selection of targetable genomic loci in practical applications of CRISPR technologies. Recently Cas9-NG, which recognizes a minimal NG PAM, was reported to expand the targeting space of genome editing in human cells, but it remains unclear whether this Cas9 variant can be used in plants. In this study, we evaluated the nuclease activity of Cas9-NG toward various NGN PAMs by targeting endogenous genes in transgenic rice. We found that Cas9-NG edits all NGG, NGA, NGT, and NGC sites with impaired activity, while the gene-edited plants were dominated by monoallelic mutations. Cas9-NG-engineered base editors were then developed and used to generate OsBZR1 gain-of-function plants that can not be created by other available Cas9-engineered base editors. Moreover, we showed that a Cas9-NG-based transcriptional activator efficiently upregulated the expression of endogenous target genes in rice. In addition, we discovered that Cas9-NG recognizes NAC, NTG, NTT, and NCG apart from NG PAM. Together, these findings demonstrate that Cas9-NG can greatly expand the targeting scope of genome-editing tools, showing great potential for targeted genome editing, base editing, and genome regulation in plants.

A Cr3+ and F− composite-doped LiNi0.5Mn1.5O4 cathode material was synthesized by the solid-state method, and the influence of the doping amount on the material’s physical and electrochemical properties was investigated. The structure and morphology of the cathode material were characterized by XRD, SEM, TEM, and HRTEM, and the results revealed that the sample exhibited clear spinel features. No Cr3+ and F− impurity phases were found, and the spinel structure became more stable. The results of the charge/discharge tests, cyclic voltammetry (CV), and electrochemical impedance spectroscopy (EIS) test results suggested that LiCr0.05Ni0.475Mn1.475O3.95F0.05 in which the Cr3+ and F− doping amounts were both 0.05, had the optimal electrochemical properties, with discharge rates of 0.1, 0.5, 2, 5, and 10 C and specific capacities of 134.18, 128.70, 123.62, 119.63, and 97.68 mAh g−1 , respectively. After 50 cycles at a rate of 2 C, LiCr0.05Ni0.475Mn1.475O3.95F0.05 showed extremely good cycling performance, with a discharge specific capacity of 121.02 mAh g−1 and a capacity retention rate of 97.9%. EIS test revealed that the doping clearly decreased the charge-transfer resistance.

RNA-directed DNA methylation (RdDM) and histone H3 lysine 9 dimethylation (H3K9me2) are related transcriptional silencing mechanisms that target transposable elements (TEs) and repeats to maintain genome stability in plants. RdDM is mediated by small and long noncoding RNAs produced by the plant-specific RNA polymerases Pol IV and Pol V, respectively. Through a chemical genetics screen with a luciferase-based DNA methylation reporter, LUCL, we found that camptothecin, a compound with anti-cancer properties that targets DNA topoisomerase 1α (TOP1α) was able to de-repress LUCL by reducing its DNA methylation and H3K9me2 levels. Further studies with Arabidopsis top1α mutants showed that TOP1α silences endogenous RdDM loci by facilitating the production of Pol V-dependent long non-coding RNAs, AGONAUTE4 recruitment and H3K9me2 deposition at TEs and repeats. This study assigned a new role in epigenetic silencing to an enzyme that affects DNA topology., Author Summary DNA topoisomerase is an enzyme that releases the torsional stress in DNA generated during DNA replication or transcription. Here, we uncovered an unexpected role of DNA topoisomerase 1α (TOP1α) in the maintenance of genome stability. Eukaryotic genomes are usually littered with transposable elements (TEs) and repeats, which pose threats to genome stability due to their tendency to move or recombine. Mechanisms are in place to silence these elements, such as RNA-directed DNA methylation (RdDM) and histone H3 lysine 9 dimethylation (H3K9me2) in plants. Two plant-specific RNA polymerases, Pol IV and Pol V, generate small and long noncoding RNAs, respectively, from TEs and repeats. These RNAs then recruit protein factors to deposit DNA methylation or H3K9me2 to silence the loci. In this study, we found that treatment of plants with camptothecin, a TOP1α inhibitor, or loss of function in TOP1α, led to the de-repression of RdDM target loci, which was accompanied by loss of H3K9me2 or DNA methylation. The role of TOP1α in RdDM could be attributed to its promotion of Pol V, but not Pol IV, transcription to generate long noncoding RNAs.