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Ectomycorrhizal (EM) fungi form symbioses with dominant tree families in boreal, temperate and tropical ecosystems and are important drivers of ecosystem function. EM fungal hyphae extend over a large area making them susceptible to enhanced radiation levels from naturally occurring or anthropogenically originating radioisotopes in the rhizosphere. In this study, the in-vitro effects of ionizing radiation on the growth and biomass of EM fungi Suillus luteus, S. bovinus and Rhizopogon luteolus were investigated. EM fungal cultures were exposed to gamma radiation from a 137Cs source for 137 h in darkness at 21 °C at dose rates of 404, 108.5 and 54.9 mGy h−1 resulting in total absorbed doses of 55.21, 14.82 and 7.50 Gy respectively. Cultures grown in the dark at 21 °C but not exposed to the 137Cs source served as the control. Our results show that EM fungi vary in their sensitivity to ionizing radiation. EM fungi used in this study produced melanin and reactive oxygen species scavenging enzymes such as catalase and superoxide dismutase as a response to ionizing radiation.

Previous studies have found indications that exposure to ionising radiation (IR) results in DNA methylation changes in plants. However, this phenomenon is yet to be studied across multiple generations. Furthermore, the exact role of these changes in the IR-induced plant response is still far from understood. Here, we study the effect of gamma radiation on DNA methylation and its effect across generations in young Arabidopsis plants. A multigenerational set-up was used in which three generations (Parent, generation 1, and generation 2) of 7-day old Arabidopsis thaliana plants were exposed to either of the different radiation treatments (30, 60, 110, or 430 mGy/h) or to natural background radiation (control condition) for 14 days. The parental generation consisted of previously non-exposed plants, whereas generation 1 and generation 2 plants had already received a similar irradiation in the previous one or two generations, respectively. Directly after exposure the entire methylomes were analysed with UPLC-MS/MS to measure whole genome methylation levels. Whole genome bisulfite sequencing was used to identify differentially methylated regions (DMRs), including their methylation context in the three generations and this for three different radiation conditions (control, 30 mGy/h, and 110 mGy/h). Both intra- and intergenerational comparisons of the genes and transposable elements associated with the DMRs were made. Taking the methylation context into account, the highest number of changes were found for cytosines followed directly by guanine (CG methylation), whereas only limited changes in CHG methylation occurred and no changes in CHH methylation were observed. A clear increase in IR-induced DMRs was seen over the three generations that were exposed to the lowest dose rate, where generation 2 had a markedly higher number of DMRs than the previous two generations (Parent and generation 1). Counterintuitively, we did not see significant differences in the plants exposed to the highest dose rate. A large number of DMRs associated with transposable elements were found, the majority of them being hypermethylated, likely leading to more genetic stability. Next to that, a significant number of DMRs were associated with genes (either in their promoter-associated region or gene body). A functional analysis of these genes showed an enrichment for genes related to development as well as various stress responses, including DNA repair, RNA splicing, and (a)biotic stress responses. These observations indicate a role of DNA methylation in the regulation of these genes in response to IR exposure and shows a possible role for epigenetics in plant adaptation to IR over multiple generations. The authors would like to thank SCK CEN for the financing of the experiment, the project as well as JV's and PL's PhDs. Horemans, N (corresponding author), Belgian Nucl Res Ctr SCK CEN, Biosphere Impact Studies, Mol, Belgium ; Hasselt Univ, Environm Res Ctr, Diepenbeek, Belgium. nele.horemans@sckcen.be

This study aimed to compare the potential of Lemna minor, Spirodela sp., Eichhornia crassipes and Pistia stratiotes to remove 60Co from a realistic aquatic environment. Although all four plant species performed similarly well after 3 days of exposure to 50 kBq L−1 60Co, Lemna minor and Spirodela sp. came forward as having higher 60Co removal potential. This conclusion is, in first instance, based on the high 60Co removal percentage obtained after a short contact time (e.g. more than 95% could be removed after 6 h by Spirodela sp.). Additionally, Lemna minor and Spirodela sp. accumulated a high amount of 60Co per gram of biomass. For example, Lemna minor accumulated over three times more 60Co per gram of biomass compared to Pistia stratiotes and Eichhornia crassipes. Both plants also performed well in the pH range 5–9. We used Lemna minor to test the influence of the initial 60Co concentration (10, 50, 100 and 200 kBq L−1 60Co) on its phytoremediation capacity but no differences could be observed in removal percentage. In addition, it was shown that by optimising the initial amount of biomass, radioactive waste production can be minimised whilst maintaining high 60Co removal rates. Our study shows that these aquatic plants can be used for phytoremediation of 60Co from contaminated water and can be considered as a “green” addition or alternative for conventional remediation techniques.

The mutants Atnoa1 and Atnia1nia2noa1-2 having a defective chloroplast developmental process, showed enhanced chlorophyll levels when they were grown on Murashige and Skoog (MS) medium and on exposure with uranium (U) on Hoagland medium. Thus we hypothesized that these mutants probably produced NO in MS medium and on exposure with U. Wild-type Col-0, Atnoa1, Atnia1nia2noa1-2 plants were cultured on modified Hoagland and 1/10 MS media and NO generation in the roots of these mutants was monitored using NO selective fluorescent dyes, DAF-2DA and Fl2E. Both Atnoa1 and Atnia1nia2noa1-2 triple mutants produced NO as observed by increases in DAF-2T and Fl2E fluorescence when these mutants were grown on MS medium but not on Hoagland medium. In presence of NO scavenger, methylene blue (MB, 200 μM), DAF-2T and Fl2E fluorescence was completely abolished. On the other hand treatment of the plants with 25 μM U triggered NO generation. U-treated Atnoa1 and Atnia1nia2noa1-2 plants upregulated genes (POR B, POR D, CHL D) involved in the chlorophyll biosynthesis. From these results it was concluded that Atnoa1 and Atnia1nia2noa1-2 are conditional NO producers and it appears that NO generation in plants substantially depends on growth medium and NIA1, NIA2 or NOA1 does not appear to be really involved in NO generation in MS medium or after U exposure.

We used HPLC to identify and quantify pigments in a Holocene sediment record from large, shallow Lake Peipsi, Estonia. The aim of our study was to track the influence of long-term climate change (i.e. temperature fluctuations) on past dynamics of aquatic primary producers. Sedimentary pigments were separated and quantified in 182 samples that span the last ca. 10,000 years. There was an increasing trend in sedimentary pigment concentrations from basal to upper sediment layers, suggesting a gradual increase in lake trophic status through time. Using additive models, our results suggested that primary producer dynamics in Lake Peipsi were closely related to temperature fluctuations. We, however, identified two periods (early Holocene and after ca. 2.5 cal ka BP) when the relationship between primary producer composition and temperature was weak, suggesting the influence of additional drivers on the primary producer community. We postulate that: (a) the increase of primary producer biomass in the early Holocene could have been caused by input of allochthonous organic matter and nutrients from the flooded areas when water level in Lake Peipsi was increasing, and (b) changes in the abundance and structure of primary producer assemblages since ca. 2.5 cal ka BP was related to widespread agricultural activities in the Lake Peipsi catchment. These results suggest that human activities can disrupt the relationship between the primary producer community and temperature in large, shallow lakes. This research was supported by institutional research grants IUT21-2, IUT1-8 and PRG323 and Estonian Science Foundation Grants Nos. 6741, 7888 and 9102. We acknowledge colleagues S. Veski, A. Heinsalu and J. Vassiljev for sediment coring and establishing the chronology, and A. Leeben for participating in the early stage of manuscript development. We are grateful for the comments and corrections made by two anonymous reviewers of the manuscript. This research was supported by institutional research grants IUT21-2, IUT1-8 and PRG323 and Estonian Science Foundation Grants Nos. 6741, 7888 and 9102. We acknowledge colleagues S. Veski, A. Heinsalu and J. Vassiljev for sediment coring and establishing the chronology, and A. Leeben for participating in the early stage of manuscript development. We are grateful for the comments and corrections made by two anonymous reviewers of the manuscript.

In the following study, dose dependent effects on growth and oxidative stress induced by -radiation were examined to gain better insights in the mode of action of -radiation induced stress in plant species. Radiostrontium (Sr-90) was used to test for -radiation induced responses in the freshwater macrophyte Lemna minor. The accumulation pattern of Sr-90 was examined for L. minor root and fronds separately over a seven-day time period and was subsequently used in a dynamic dosimetric model to calculate -radiation dose rates. Exposing L. minor plants for seven days to a Sr-90 activity concentration of 25 up to 25,000 kBqL(-1) resulted in a dose rate between 0.084 +/- 0.004 and 97 +/- 8 mGyh(-1). After seven days of exposure, root fresh weight showed a dose dependent decrease starting from a dose rate of 9.4 +/- 0.5 mGyh(-1). Based on these data, an EDR10 value of 1.5 +/- 0.4 mGyh(-1) was estimated for root fresh weight and 52 +/- 17 mGyh(-1) for frond fresh weight. Different antioxidative enzymes and metabolites were further examined to analyze if -radiation induces oxidative stress in L. minor. The authors thank the Research foundation-Flanders (FWO) (G.A040.11N) and the European Commission Contract Fission-2010-3.5.1-269672 Strategy for Allied Radioecology (www.star-radioecology.org) for financial support of this work. Belgian nuclear research institute (SCK.CEN) is further thanked for funding the PhD of A. Van Hoeck.

In quantum dynamics, physically well-adapted curvilinear coordinates are coordinates that lead to a Hamiltonian operator as separable as possible, in order to simplify the resolution of the...

Long-lived radionuclides such as (90)Sr and (137)Cs can be naturally or accidentally deposited in the upper soil layers where they emit β/γ radiation. Previous studies have shown that arbuscular mycorrhizal fungi (AMF) can accumulate and transfer radionuclides from soil to plant, but there have been no studies on the direct impact of ionizing radiation on AMF. In this study, root organ cultures of the AMF Rhizophagus irregularis MUCL 41833 were exposed to 15.37, 30.35, and 113.03 Gy gamma radiation from a (137)Cs source. Exposed spores were subsequently inoculated to Plantago lanceolata seedlings in pots, and root colonization and P uptake evaluated. P. lanceolata seedlings inoculated with non-irradiated AMF spores or with spores irradiated with up to 30.35 Gy gamma radiation had similar levels of root colonization. Spores irradiated with 113.03 Gy gamma radiation failed to colonize P. lanceolata roots. P content of plants inoculated with non-irradiated spores or of plants inoculated with spores irradiated with up to 30.35 Gy gamma radiation was higher than in non-mycorrhizal plants or plants inoculated with spores irradiated with 113.03 Gy gamma radiation. These results demonstrate that spores of R. irregularis MUCL 41833 are tolerant to chronic ionizing radiation at high doses.

When terrestrial environments get contaminated with long-lived gamma emitting radionuclides, plants that grow in these contaminated areas are exposed to gamma radiation during consecutive generations. Therefore it is important to evaluate the gamma induced stress response in plants in and between generations. The objective of this research is to reveal differences at the level of the antioxidative stress response between generations with a different radiation history. An experiment was conducted in which 7-days old Arabidopsis thaliana plants were exposed for 14 days to four different gamma dose rates: 22 mGy/h, 38 mGy/h, 86 mGy/h and 457 mGy/h. Two different plant groups were used: plants that were not exposed to gamma radiation before (P0) and plants that received the aforementioned gamma treatment during their previous generation (S1). Growth, the concentration of the antioxidants ascorbate and glutathione, a number of antioxidative enzyme activities and their gene transcript levels were analysed. A dose-rate dependent induction was seen for catalase (CAT) and guaiacol peroxidase (GPX) in the roots and for syringaldazine peroxidase (SPX) in the shoots. Differences between the two generations were observed for CAT and GPX in the roots, where a significantly higher activity of these reactive oxygen species (ROS) detoxifying enzymes was observed in the S1 generation. For SPX in the shoots, a dose dependent upregulation was observed in the PO generation. However, high SPX activities were present for all doses in the S1 generation. These differences in enzyme activity between generations for SPX and GPX and the involvement of these enzymes in cell wall biosynthesis, suggest an important role for cell wall strengthening in the response to gamma irradiation. (C) 2016 Elsevier Ltd. All rights reserved. This project was supported by the European project COMET (7th PCRD EURATOM Contract Number: Fission-2012-3.4.1-604794) (www.comet-radioecology.org) and the Belgian nuclear research centre (SCK CEN).

International audience; This book explains the usage and application of Molecular Quantum Dynamics, the methodology where both the electrons and the nuclei in a molecule are treated with quantum mechanical calculations. This volume of Lecture Notes in Chemistry addresses graduate students and postdocs in the field of theoretical chemistry, as well as postgraduate students, researchers and teachers from neighboring fields, such as quantum physics, biochemistry, biophysics, or anyone else who is interested in this rising method in theoretical chemistry, and who wants to gain experience in the opportunities it can offer. It can also be useful for teachers interested in illustrative examples of time-dependent quantum mechanics as animations of realistic wave packets have been designed to assist in visualization.Assuming a basic knowledge about quantum mechanics, the authors link their explanations to recent experimental investigations where Molecular Quantum Dynamics proved successful and necessary for the understanding of the experimental results. Examples including reactive scattering, photochemistry, tunneling, femto- and attosecond chemistry and spectroscopy, cold chemistry or crossed-beam experiments illustrate the power of the method. The book restricts complicated formalism to the necessary and in a self-contained and clearly explained way, offering the reader an introduction to, and instructions for, practical exercises. Continuative explanation and math are optionally supplemented for the interested reader.The reader learns how to apply example simulations with the MCTDH program package (Multi Configuration Time Dependent Hartree calculations). Readers can thus obtain the tools to run their own simulations and apply them to their problems. Selected scripts and program code from the examples are made available as supplementary material.This book bridges the gap between the existing textbooks on fundamental theoretical chemistry and research monographs focusing on sophisticated applications. It is a must-read for everyone who wants to gain a sound understanding of Molecular Quantum Dynamics simulations and to obtain basic experience in running their own simulations.

Ecotoxicological research provides knowledge on ionising radiation-induced responses in different plant species. However, the sparse data currently available are mainly extracted from acute exposure treatments. To provide a better understanding of environmental exposure scenarios, the response to stress in plants must be followed in more natural relevant chronic conditions. We previously showed morphological and biochemical responses in Lemna minor plants continuously exposed for 7 days in a dose-rate dependent manner. In this study responses on molecular (gene expression) and physiological (photosynthetic) level are evaluated in Leminor plants exposed to ionising radiation. To enable this, we examined the gene expression profiles of irradiated Leminor plants by using an RNA-seq approach. The gene expression data reveal indications that Leminor plants exposed at lower dose rates, can tolerate the exposure by triggering acclimation responses. In contrast, at the highest dose rate tested, a high number of genes related to antioxidative defense systems, DNA repair and cell cycle were differentially expressed suggesting that only high dose rates of ionising radiation drive Leminor plants into survival strategies. Notably, the photosynthetic process seems to be unaffected in Leminor plants among the tested dose rates. This study, supported by our earlier work, clearly indicates that plants shift from acclimation responses towards survival responses at increasing dose rates of ionising radiation. (C) 2017 Elsevier B.V. All rights reserved.

For the computation of rovibrational levels and their spectroscopic intensities, the Eckart conditions are essential to achieve the optimal separation between rotation and vibration. Dymarsky and Kudin [J. Chem. Phys. 122, 124103 (2005)] proposed a procedure for a simplified calculation of the Eckart rotation matrix. In the present work, we have adapted their approach to obtain a kinetic energy operator in curvilinear coordinates using a numerical but exact procedure without resorting to finite differences. Furthermore, we have modified this approach for the study of molecular systems with several minima, for which several Eckart reference geometries are required. The HONO molecular system has been used to show the efficiency of our implementation. Using the Eckart conditions with multi-reference geometries allows for a calculation of the rotational levels as well as frequencies and intensities of the infrared spectra of both HONO isomers with a single calculation.

Quantum dynamical approaches based on product-grids are limited to the studies of molecular systems with few degrees of freedom, typically less than ten. Recently, Avila et al. [G. Avila, T. Carrington, J. Chem. Phys., 131 (2009) 174103] have introduced the Smolyak scheme [S.A. Smolyak, Sov. Math. Dokl., 4 (1963) 240], which considerably reduces the size of the grids. This approach has pushed back the present calculation limits on the vibrational spectra of polyatomic molecules. In the present study, we have developed an extension of the standard Smolyak scheme in which this scheme is combined with multidimensional grids, such as cubatures, to obtain new sparse grids. This scheme has been applied to the study of the torsional energy levels of methanol in full dimensionality (12D).

We present new techniques for an automatic computation of the kinetic energy operator in analytical form. These techniques are based on the use of the polyspherical approach and are extended to take into account Cartesian coordinates as well. An automatic procedure is developed where analytical expressions are obtained by symbolic calculations. This procedure is a full generalization of the one presented in Ndong et al., [J. Chem. Phys. 136, 034107 (2012)]. The correctness of the new implementation is analyzed by comparison with results obtained from the TNUM program. We give several illustrations that could be useful for users of the code. In particular, we discuss some cyclic compounds which are important in photochemistry. Among others, we show that choosing a well-adapted parameterization and decomposition into subsystems can allow one to avoid singularities in the kinetic energy operator. We also discuss a relation between polyspherical and Z-matrix coordinates: this comparison could be helpful for building an interface between the new code and a quantum chemistry package.

As the environment is inevitably exposed to ionizing radiation from natural and anthropogenic sources, it is important to evaluate gamma radiation induced stress responses in plants. The objective of this research is therefore to investigate radiation effects in Arabidopsis thaliana on individual and subcellular level by exposing 2-weeks-old seedlings for 7 days to total doses of 3.9 Gy, 6.7 Gy, 14.8 Gy and 58.8 Gy and evaluating growth, photosynthesis, chlorophyll a, chlorophyll b and carotenoid concentrations and antioxidative enzyme capacities. While the capacity of photosystem II (PSII measured as Fv/Fm) remained intact, plants started optimizing their photosynthetic process at the lower radiation doses by increasing the PSII efficiency (φPSII) and the maximal electron transport rate (ETRmax) and by decreasing the non-photochemical quenching (NPQ). At the highest radiation dose, photosynthetic parameters resembled those of control conditions. On subcellular level, roots showed increased superoxide dismutase (SOD) and ascorbate peroxidase (APX) capacities under gamma irradiation but catalase (CAT), syringaldazine peroxidase (SPX) and guaiacol peroxidase (GPX) activities, on the other hand, decreased. In the leaves no alterations were observed in SOD, CAT and SPX capacities, but GPX was highly affected. Based on these results it seems that roots are more sensitive for oxidative stress under gamma radiation exposure than leaves.

The angular momentum operator math of a particle obeys the usual commutation rule math×math = iℏmath. In contrast, the total angular momentum operator math of a set of particles relative to moving axes (as, for instance, when mounted on a tumbling molecule) obeys the anomalous commutation rule math×math = −iℏmath. We give a pedagogical and mathematically nonsophisticated description of intermediate cases for which partial angular momentum operators, relative to various moving frames, obey unusual commutation relations that are neither usual nor anomalous. Insight into the origin of these unusual commutation relations provides a means of guessing the type of commutation rule that will be obeyed. In particular, it gives a way to avoid, as far as possible, the unusual commutation relations, which lead to complicated and nonsystematic expressions. Some examples from molecular physics are presented.

No compact expression of the evolution operator is known when the Hamiltonian operator is time dependent, like when Hamiltonian operators describe, in a semiclassical limit, the interaction of a molecule with an electric field. It is well known that Magnus N. Magnus, Commun. Pure Appl. Math. 7, 649 1954 has derived a formal expression where the evolution operator is expressed as an exponential of an operator defined as a series. In spite of its formal simplicity, it turns out to be difficult to use at high orders. For numerical purposes, approximate methods such as “Runge-Kutta” or “split operator” are often used usually, however, to a small order 5, so that only small time steps, about one-tenth or one-hundredth of the field cycle, are acceptable. Moreover, concerning the latter method, split operator, it is only very efficient when a diagonal representation of the kinetic energy operator is known. The Taylor expansion of the evolution operator or the wave function about the initial time provides an alternative approach, which is very simple to implement and, unlike split operator, without restrictions on the Hamiltonian. In addition, relatively large time steps up to the field cycle can be used. A two-level model and a propagation of a Gaussian wave packet in a harmonic potential illustrate the efficiency of the Taylor expansion. Finally, the calculation of the time-averaged absorbed energy in fluoroproprene provides a realistic application of our method. © 2007 American Institute of Physics.

International audience; We develop a new general code to automatically derive exact analytical kinetic energy operators in terms of polyspherical coordinates. Computer procedures based on symbolic calculations are implemented. Sets of orthogonal or non-orthogonal vectors are used to parametrize the molecular systems in space. For each set of vectors, and whatever the size of the system, the exact analytical kinetic energy operator (including the overall rotation and the Coriolis coupling) can be derived by the program. The correctness of the implementation is tested for different sets of vectors and for several systems of various sizes.