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Organic batteries are promising alternatives to the present rechargeable battery technologies, mainly due to projected lower fabrication costs, less environmental impact, more versatility, and chemical and mechanical flexibility. In this study we investigate potential organic battery electrodes composed of an electronically conductive graphene monolayer functionalized with redox-active anthraquinone (AQ). The combination overcomes common drawbacks of organic batteries: (i) the solubility of the organic redox-active materials in the electrolyte is mitigated by anchoring onto graphene and (ii) the need for a large amount of conductive additives in the composite electrode is circumvented by the high conductivity of graphene. The electrodes are modelled by various density functional theory (DFT) based approaches and their fundamental promise as part of Li, Ca, and Al based batteries are outlined. We model the design of the electrodes, such as AQ attachment and loading, the thermodynamics of accepting mono to trivalent ideal charge carriers from the electrolyte, i.e. Li+, Ca2+, and Al3+, and the kinetics of ion diffusion at the electrode surface by assessment of the activation barriers. From the calculated multi-step electrode potential profiles, the theoretical electrode energy densities, with respect to the redox-active part, are 570 and 512 W h kg−1 for Li and Ca, respectively, which is quite comparable to the active materials of inorganic medium voltage lithium-ion battery electrodes. As the average potentials are in the range 0.5–1.2 V vs. Mn+/M0 these materials are either to be used as negative electrodes, combined with a high or medium potential positive electrode, or as positive electrodes vs. metal electrodes, for low voltage battery application.

Hybrid Li–Na ion batteries (HLSIBs) have become attractive because they combine the high energy density of lithium-ion batteries with the safety and low cost of sodium-ion batteries. However, the p...

Singlet fission, a multiple exciton generation process, can revolutionize existing solar cell technologies. Offering the possibility to double photocurrent, the process has become a focal point for physicists, chemists, software developers, and engineers. The following review is dedicated to the female investigators, predominantly theorists, who have contributed to the field of singlet fission. We highlight their most significant advances in the subject, from deciphering the mechanism of the process to designing coveted singlet fission materials.

We demonstrate the relationship between the topology (the way in which the atoms are connected), open-shell character, and singlet fission (SF) propensity in a series of diboron-doped anthracenes and phenanthrenes. The study is performed by using high-level wave-function-based quantum-chemical calculations. The results show that the molecular topology plays a crucial role for the optical properties and, respectively, for the SF propensity of the studied compounds. The topology-derived correlations between the structure and properties are interpreted in the light of the Kekule hydrocarbons concept and serve as molecular design guidelines for the discovery of new SF materials. Finally, several boron-doped polycyclic aromatic hydrocarbons are proposed as SF chromophores for organic solar cells.

A combined theoretical/experimental study of the photoreactivity of two flavylium-derived chalcones, 2,4,4′-trihydroxychalcone and 2,4′-dihydroxychalcone, at the multiconfigurational wavefunction level of theory (CASSCF//CASPT2) in vacuo and in an implicit solvent (water, treated as a polarisable continuum) and by means of linear absorption spectroscopy is presented. The photosensitivity of flavium salts is expressed in the ability of their chalcone form to undergo a cis-trans isomerisation which has found application in logical networks. Despite a considerable amount of experimental data documenting the dependence of the isomerisation on solvent, pH and temperature, the knowledge of how chalcones process energy under various conditions at the molecular level is still scarce. On the example of 2,4,4′-trihydroxychalcone we unravel the complex excited state deactivation mechanism in vacuo involving ultrafast decay through conical intersections, formation of twisted intramolecular charge transfer species, intramolecular proton transfer and inter system crossings. Furthermore, we rationalise the observed discrepancies in the linear absorption spectra of 2,4,4′-trihydroxychalcone and 2,4′-dihydroxychalcone, thereby establishing a link between the functionalisation pattern and the observed spectral properties.

Human immunodeficiency virus-1 (HIV-1) glycoprotein 120 (gp120) is one of the key targets for treatment of acquired immunodeficiency syndrome. A large number of inhibitors are being designed for this target in order to find safe and effective drugs. In the present study, quantitative structure activity relationship (QSAR) models established on 128 gp120 indole-based attachment inhibitors have been developed using suitable molecular descriptors. Chemometrics techniques including multiple linear regression (MLR), artificial neural network (ANN) and support vector machine (SVM) methods were used to set up QSAR models in order to explain the structural requirements of HIV-1 gp120 inhibitory activity. The prediction performance of each developed model was evaluated. The results obtained, for both the training and test sets, were encouraging. These results reveal that the predictive power of the SVM model is slightly superior to those of the MLR and ANN models. Further, the docking process was used not only to identify the most probable position and orientation of an inhibitor within the gp120 but also to assess its affinity with this target. This study could help researchers, particularly those working in the field of the pharmaceutical industry, to identify and discover more potent, active, and selective HIV-1 attachment inhibitors. Therefore, the established models could improve, diversify, and accelerate the drug development process and reduce the use of the trial and error approach in the search of new drug targets for the treatment of HIV.

All possible monohydroxycoumarin derivatives are modeled using density functional theory computations in order to investigate the role of the hydroxyl group position for the radical-scavenging and antioxidant activity of these compounds. Geometry optimization is performed using the B3LYP functional with the 6-311++G(d,p) basis set. The enthalpy changes are assessed in gas phase and in implicit water using the polarized continuum model. Structure-reactivity patterns are delineated. The most reactive isomers as well as the most probable mechanism of interaction between monohydroxycoumarins and free radicals are outlined.

Compounds able to adsorb at the interface of two immiscible liquids are of high importance for numerous chemical, physical and biological processes. Deeper understanding of the interfacial phenomena in such systems can contribute significantly to the rational practical application of small amphiphiles in electrochemistry, extraction, stabilization of emulsions, and drug design. Particularly interesting are the oil-water formulations, where the aqueous and the hydrophobic phases tend to express different molecular structure and characteristics under identical conditions. Surfactant behaviour in such environments is known to differ distinctly from the one observed in bulk water or oil or at the gas-liquid interface. It has been demonstrated that the free energy of adsorption and transfer of amphiphiles across water-oil interfaces can be decomposed into specific contributions of molecular fragments. The models developed so far do not provide information about the specifics of the functional groups contributions. To elaborate further on this topic, classical molecular dynamics simulations, combined with umbrella sampling calculations and weighted histograms method analysis are applied to reconstruct the free energy profile for several water-oil-amphiphile models along a relocation coordinate normal to the interface. Normal pentane, hexane, and heptane are chosen as models of the hydrophobic liquids and three short-chained normal alcohols⿿as low-molecular-weight amphiphiles. Gibbs energies of transfer and adsorption, as well as the average contributions per unit of elongation of the alkyl chain, are estimated and compared to experimental data and empirical results. The experimental trends of all quantities are reproduced correctly. Some quantitative differences are discussed. A detailed analysis of the free energy change vs. position of alcohol molecules shows that the transfer process can be decomposed into several stages. Such more precise stratification of the interfacial region is employed to determine and rationalize the free energy contributions of the separate alkanol functional groups.

Complexes of Tb(III) with the biscoumarin derivative 3,3′-[(4-hydroxyphenyl)methyl]bis-(4-hydroxy- 2H -chromen-2-one) are synthesized by using a solution of tetraethylammonium hydroxide, [(C 2 H 5 ) 4 N]OH, in water as deprotonating base. Elemental analysis, IR- and fluorescence spectroscopy are used to characterize the samples obtained. The complexes have good fluorescent properties and show the characteristic emission bands of the Tb(III) ion. The triplet state of the mono-deprotonated ligand H 2 L − was determined. The optimised geometries of the ligand and the complexes were obtained by means of molecular modelling with first principles (DFT) methods.

Crystallization water plays an important role in the self-organization of oligomer chains in conducting polyaniline. In order to quantify the interaction between emeraldine salt and such a water, models containing a tetramer in bipolaronic or polaronic form, chloride counterions, and an explicit water molecule are used. Different initial positions of water with respect to the oligomer chain-tangential and vertical-are considered. Various media are simulated by introducing an implicit solvent continuum of decreasing polarity. The DFT-D3/PCM computational approach is employed to examine the behavior of the systems in several aspects-the role of the explicit water position and the effect of the environment polarity on the spatial structure, energetics, charge distribution, and the frontier molecular orbital energies. The strength of hydrogen bonding and the patterns of charge redistribution invoked by the water molecule are discussed. The study establishes trend lines in the variation of the molecular characteristics upon change of milieu as a tool for control of the self-assembly process. The results show that chains interact more efficiently with tangentially placed water. The influence of the environment polarity is minor and is mainly expressed in slight shortening of the intermolecular distances and mild decrease of the group charges of the system components with reduction of polarity.

International audience; Structural characteristics of model monolayers of dilauroyl phosphatidylcholine (1,2-dilauroyl-sn-glycerol-3-phosphatidylcholine [DLPC]) adsorbed at the water/vapors and water/octane interfaces were studied by means of computational chemistry methods. Coarse-grained, followed by all-atom molecular dynamics simulations were used to obtain the monolayers equilibrium structures at room temperature at both fluid interfaces. The analysis of the polar head orientation, polar region thickness, tail lengths, and NMR order parameter revealed that the different interface composition affects only the tail lengths and their orientation with respect to the interface. At the octane/water boundary the DLPC tails are less extended than the tails at the water/vacuum interface and are rather significantly tilted or multiply folded. Very similar structuring of the polar DLPC region at both studied boundaries was established. Dynamic C-13 NMR chemical shift values, (C-13) computed with density functional theory allowed to identify the interface effect on the DLPC molecular structure and the intramolecular motions in the adsorbed monolayer at the room temperature equilibrium. Detailed analysis of these dynamic (C-13) values compared with available experimental data and static (C-13) estimates of one DLPC low-energy conformer are presented and discussed.

In order to afford in a controlled fashion fine-tuning of the color and the intensity of the emitted light of potential fluorophores for organic light-emitting diodes (OLED), directed molecular design based on a donor-spacer-acceptor model is undertaken. One way of increasing emission efficiency is triplet harvesting. This can be achieved by thermally activated delayed fluorescence (TADF) when triplet and singlet excited states are quasi degenerate. Molecular building units are selected and bound in a specific pattern to allow for increase in emission performance, also due to TADF. Using time-dependent density functional theory, the relevant singlet-singlet and triplet-singlet energy gaps corresponding to absorption or emission transitions of the compounds are computed to simulate the electroluminescent spectrum. The results are analyzed in depth and relations between some spectral and structural properties are proposed. The best suited molecules are delineated as potential OLED building blocks. Guidelines for systematic improvement of the molecular characteristics are outlined.

Quantitative Structure Activity Relationships (QSAR or SAR) have helped scientists to establish mathematical relationships between molecular structures and their biological activities. In the present article, SAR studies have been carried out on 89 tetrahydroimidazo[4,5,1-jk][1,4]benzodiazepine (TIBO) derivatives using different classifiers, such as support vector machines, artificial neural networks, random forests, and decision trees. The goal is to propose classification models that will be able to classify TIBO compounds into two groups: high and low inhibitors of HIV-1 reverse transcriptase. Each molecular structure was encoded by 10 descriptors. To check the validity of the established models, all of them were subjected to various validation tests: internal validation, Y-randomization, and external validation. The established classification models have been successful. The correct classification rates reached 100% and 90% in the learning and test sets, respectively. Finally, molecular docking analysis was carried out to understand the interactions between reverse transcriptase enzyme and the TIBO compounds studied. Hydrophobic and hydrogen bond interactions led to the identification of active binding sites. The established models could help scientists to predict the inhibition activity of untested compounds or of novel molecules prior to their synthesis. Therefore, they could reduce the trial and error process in the design of human immunodeficiency virus (HIV) inhibitors.

Density functional (DF) based numerical approaches for computing orbital and atomic reactivity indices were employed in the study of selectivity descriptors for the 1,4 Michael addition reaction. To this aim, atomic and orbital Fukui indices and atomic softnesses for 2-arylmethylene-1,4-butanolides and N,N-disubstituted phenylacetamides were computed. Further on, these local selectivity descriptors have been rationalized in terms of the Pearson's hard-soft-acid-base principle to explain the observed regioselectivity. It is shown that the methods employed for local (atomic and orbital) reactivity index computations are useful and reliable for prediction of the regioselectivity upon conjugate addition of ambident nucleophiles to 2,3-unsaturated carboxylic esters. All the results reveal similar degree of localization/hardness of the 1,4-butanolides C4 and active alpha-carbon belonging to the N,N-dimethyl-phenylacetamide, while the soft alpha-carbon in LiCH2CN reacts with the soft C2 1,4-butanolide center.

The quest for more efficient blue emitters to be applied in organic light-emitting diodes is one of the challenging tasks of contemporary nanotechnologies. An approach to enhance substantially the intrinsic efficiency of luminescent organic molecules is the so-called thermally activated delayed fluorescence. A prerequisite for its occurrence is a vanishing energy separation between the first singlet and triplet excited states. A series of donor–acceptor molecules is investigated theoretically within this study in order to validate a molecular model for design of efficient organic blue emitters with closely spaced singlet and triplet excited states. The model is based on meta -linkage of the donor and acceptor residues to a spacer ensuring frontier molecular orbitals partitioning. The optimal geometries of the molecules are obtained with density functional theory (B3LYP/6-31G * ) and the singlet and triplet absorption spectra are simulated within the time-dependent density functional framework. The excited singlet-triplet energy gap is estimated and correlated to structural and energetic characteristics of the donors and acceptors. Several requirements for achieving high-energy triplet states at the molecular level in such donor–acceptor systems are outlined, the main being disjoint character of the molecular orbitals on the spacer and sufficient energy separation of the two topmost occupied orbitals. It is shown that by variation of the acceptor moiety the optical absorption transitions of the compounds can be fine-tuned in a systematic fashion. Molecules with degenerate singlet and triplet first excited states are proposed, combining bisdimethylaminotriphenylamine or phenoxazine as donors with diphenyloxadiazole or diphenyl-2,2′-bipyridine as acceptors. Bipolar molecules derived from this model could be used as prospective building blocks for efficient emissive materials in blue organic light-emitting diodes.

Fully atomistic molecular dynamics simulations were performed on liquid n-pentane, n-hexane, and n-heptane to derive an atomistic model for middle-chain-length alkanes. All simulations were based on existing molecular-mechanical parameters for alkanes. The computational protocol was optimized, for example, in terms of thermo- and barostat, to reproduce properly the properties of the liquids. The model was validated by comparison of thermal, structural, and dynamic properties of the normal alkane liquids to experimental data. Two different combinations of temperature and pressure coupling algorithms were tested. A simple differential approach was applied to evaluate fluctuation-related properties with sufficient accuracy. Analysis of the data reveals a satisfactory representation of the hydrophobic systems behavior. Thermodynamic parameters are close to the experimental values and exhibit correct temperature dependence. The observed intramolecular geometry corresponds to extended conformations domination, whereas the intermolecular structure demonstrates all characteristics of liquid systems. Cavity size distribution function was calculated from coordinates analysis and was applied to study the solubility of gases in hexane and heptane oils. This study provides a platform for further in-depth research on hydrophobic solutions and multicomponent systems. © 2014 Wiley Periodicals, Inc.

The search for targeted drug delivery systems requires the design of drug-carrier complexes, which could both reach the malignant cells and preserve the therapeutic substance activity. A promising strategy aimed at enhancing the uptake and reducing the systemic toxicity is to bind covalently the drug to a cell-penetrating peptide. To understand the structure-activity relationship in such preparations, the chemotherapeutic drug doxorubicin was investigated by unrestrained molecular dynamics simulations, supported by NMR, which yielded its molecular geometry in aqueous environment. Furthermore, the structure and dynamics of a conjugate of the drug with a cell-penetrating peptide was obtained from molecular dynamics simulations in aqueous solution. The geometries of the unbound compounds were characterized at different temperatures, as well as the extent to which they change after covalent binding and whether/how they influence each other in the drug-peptide conjugate. The main structural fragments that affect the conformational ensemble of every molecule were found. The results show that the transitions between different substructures of the three compounds require a modest amount of energy. At increased temperature, either more conformations become populated as a result of the thermal fluctuations or the relative shares of the various conformers equalize at the nanosecond scale. These frequent structural interconversions suggest expressed conformational freedom of the molecules. Conjugation into the drug-peptide compound partially immobilizes the molecules of the parent compounds. Nevertheless, flexibility still exists, as well as an effective intra- and intermolecular hydrogen bonding that stabilizes the structures. We observe compact packing of the drug within the peptide that is also based on stacking interactions. All this outlines the drug-peptide conjugate as a prospective building block of a more complex drug-carrier system.