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Abstract Whether cities are more or less diverse than surrounding environments, and the extent to which non‐native species in cities impact regional species pools, remain two fundamental yet unanswered questions in urban ecology. Here we offer a unifying framework for understanding the mechanisms that generate biodiversity patterns across taxonomic groups and spatial scales in urban systems. One commonality between existing frameworks is the collective recognition that species co‐occurrence locally is not simply a function of natural colonization and extinction processes. Instead, it is largely a consequence of human actions that are governed by a myriad of social processes occurring across groups, institutions, and stakeholders. Rather than challenging these frameworks, we expand upon them to explicitly consider how human and non‐human mechanisms interact to control urban biodiversity and influence species composition over space and time. We present a comprehensive theory of the processes that drive biodiversity within cities, between cities and surrounding non‐urbanized areas and across cities, using the general perspective of metacommunity ecology. Armed with this approach, we embrace the fact that humans substantially influence β‐diversity by creating a variety of different habitats in urban areas, and by influencing dispersal processes and rates, and suggest ways how these influences can be accommodated to existing metacommunity paradigms. Since patterns in urban biodiversity have been extensively described at the local or regional scale, we argue that the basic premises of the theory can be validated by studying the β‐diversity across spatial scales within and across urban areas. By explicitly integrating the myriad of processes that drive native and non‐native urban species co‐occurrence, the proposed theory not only helps reconcile contrasting views on whether urban ecosystems are biodiversity hotspots or biodiversity sinks, but also provides a mechanistic understanding to better predict when and why alternative biodiversity patterns might emerge.

Plant functional traits may help distinguish introduced species that will become invasive from those that do not. Here, Divíšek et al. show that functional profiles of naturalized plant species are similar to natives, while those of invasive plant species exist at the edge of the functional trait space.

The study was conducted to assess the effect of conventional, integrated and organic management on differences in plant species composition, richness and diversity. The plants were studied in triads of orchards situated in three regions of the Czech Republic. Data about species occurrences were collected on 15 permanent plots in the tree rows and 15 plots between tree rows in each of the apple orchards during 2009. A total of 201 vascular plant species (127 native species, 65 archaeophytes, and 9 neophytes) were found. Management type and also different regional conditions had a significant effect on plant species composition and on diversity parameters of orchard spontaneous vegetation. Species richness and species pool was significantly higher in the organic orchards than in the differently managed orchards. Management type had significant effect on proportions of archaeophytes, and also neophytes in apple orchards. The results showed that a change from conventional to integrated and organic management in apple orchards lead to higher plant species diversity and to changes in plant species composition.

The effects of non-native species invasions on community diversity and biotic homogenization have been described for various taxa in urban environments, but not for land snails. Here we relate the diversity of native and non-native land-snail urban faunas to urban habitat types and macroclimate, and analyse homogenization effects of non-native species across cities and within the main urban habitat types. Land-snail species were recorded in seven 1-ha plots in 32 cities of ten countries of Central Europe and Benelux (224 plots in total). Each plot represented one urban habitat type characterized by different management and a specific disturbance regime. For each plot, we obtained January, July and mean annual temperature and annual precipitation. Snail species were classified into either native or non-native. The effects of habitat type and macroclimate on the number of native and non-native species were analysed using generalized estimating equations; the homogenization effect of non-native species based on the Jaccard similarity index and homogenization index. We recorded 67 native and 20 non-native species. Besides being more numerous, native species also had much higher beta diversity than non-natives. There were significant differences between the studied habitat types in the numbers of native and non-native species, both of which decreased from less to heavily urbanized habitats. Macroclimate was more important for the number of non-native than native species; however in both cases the effect of climate on diversity was overridden by the effect of urban habitat type. This is the first study on urban land snails documenting that non-native land-snail species significantly contribute to homogenization among whole cities, but both the homogenization and diversification effects occur when individual habitat types are compared among cities. This indicates that the spread of non-native snail species may cause biotic homogenization, but it depends on scale and habitat type.