33 results on '"Yadav, Bhagwan"'
Search Results
2. Anti-COX-2 autoantibody is a novel biomarker of immune aplastic anemia
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Kelkka, Tiina, Tyster, Mikko, Lundgren, Sofie, Feng, Xingmin, Kerr, Cassandra, Hosokawa, Kohei, Huuhtanen, Jani, Keränen, Mikko, Patel, Bhavisha, Kawakami, Toru, Maeda, Yuka, Nieminen, Otso, Kasanen, Tiina, Aronen, Pasi, Yadav, Bhagwan, Rajala, Hanna, Nakazawa, Hideyuki, Jaatinen, Taina, Hellström-Lindberg, Eva, Ogawa, Seishi, Ishida, Fumihiro, Nishikawa, Hiroyoshi, Nakao, Shinji, Maciejewski, Jaroslaw, Young, Neal S., and Mustjoki, Satu
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- 2022
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3. Contested forest management and the Nepalese Government’s forest policy
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Yadav, Bhagwan Dutta, Shrestha, Krishna Kumar, and Acharya, Bishnu Prasad
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- 2021
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4. IFN-[alpha] with dasatinib broadens the immune repertoire in patients with chronic-phase chronic myeloid leukemia
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Huuhtanen, Jani, Ilander, Mette, Yadav, Bhagwan, Dufva, Olli M.J., Lahteenmaki, Hanna, Kasanen, Tiina, Klievink, Jay, Olsson-Stromberg, Ulla, Stentoft, Jesper, Richter, Johan, Koskenvesa, Perttu, Hoglund, Martin, Soderlund, Stina, Dreimane, Arta, Porkka, Kimmo, Gedde-Dahl, Tobias, Gjertsen, Bjorn T., Stenke, Leif, Myhr-Eriksson, Kristina, Markevarn, Berit, Lubking, Anna, Dimitrijevic, Andreja, Udby, Lene, Bjerrum, Ole Weis, Hjorth-Hansen, Henrik, and Mustjoki, Satu
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Immune system -- Health aspects ,Interferon alpha -- Dosage and administration -- Physiological aspects ,Dasatinib -- Dosage and administration -- Physiological aspects ,Chronic myeloid leukemia -- Drug therapy -- Physiological aspects ,Chemotherapy, Combination -- Methods -- Physiological aspects ,Health care industry - Abstract
In chronic myeloid leukemia (CML), combination therapies with tyrosine kinase inhibitors (TKIs) aim to improve the achievement of deep molecular remission that would allow therapy discontinuation. IFN-[alpha] is one promising candidate, as it has long-lasting effects on both malignant and immune cells. In connection with a multicenter clinical trial combining dasatinib with IFN-[alpha] in 40 patients with chronic-phase CML (NordCML007, NCT01725204), we performed immune monitoring with single-cell RNA and T cell receptor (TCR) sequencing (n = 4, 12 samples), bulk TCR[beta] sequencing (n = 13, 26 samples), flow cytometry (n = 40, 106 samples), cytokine analyses (n = 17, 80 samples), and ex vivo functional studies (n = 39, 80 samples). Dasatinib drove the immune repertoire toward terminally differentiated NK and [CD8.sup.+] T cells with dampened functional capabilities. Patients with dasatinib-associated pleural effusions had increased numbers of [CD8.sup.+] recently activated effector memory T (Temra) cells. In vitro, dasatinib prevented CD3-induced cell death by blocking TCR signaling. The addition of IFN-[alpha] reversed the terminally differentiated phenotypes and increased the number of costimulatory intercellular interactions and the number of unique putative epitope-specific TCR clusters. In vitro IFN-[alpha] had costimulatory effects on TCR signaling. Our work supports the combination of IFN-[alpha] with TKI therapy, as IFN-[alpha] broadens the immune repertoire and restores immunological function., Introduction Currently, the ultimate therapeutic goal in patients with chronic-phase chronic myeloid leukemia (CP-CML) is to achieve deep molecular remission, which would allow the discontinuation of tyrosine kinase inhibitor (TKI) [...]
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- 2022
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5. KIT pathway upregulation predicts dasatinib efficacy in acute myeloid leukemia
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Malani, Disha, Yadav, Bhagwan, Kumar, Ashwini, Potdar, Swapnil, Kontro, Mika, Kankainen, Matti, Javarappa, Komal K., Porkka, Kimmo, Wolf, Maija, Aittokallio, Tero, Wennerberg, Krister, Heckman, Caroline A., Murumägi, Astrid, and Kallioniemi, Olli
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- 2020
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6. Dasatinib and navitoclax act synergistically to target NUP98-NSD1+/FLT3-ITD+ acute myeloid leukemia
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Kivioja, Jarno L., Thanasopoulou, Angeliki, Kumar, Ashwini, Kontro, Mika, Yadav, Bhagwan, Majumder, Muntasir M., Javarappa, Komal K., Eldfors, Samuli, Schwaller, Juerg, Porkka, Kimmo, and Heckman, Caroline A.
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- 2019
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7. JAK1/2 and BCL2 inhibitors synergize to counteract bone marrow stromal cell–induced protection of AML
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Karjalainen, Riikka, Pemovska, Tea, Popa, Mihaela, Liu, Minxia, Javarappa, Komal K., Majumder, Muntasir M., Yadav, Bhagwan, Tamborero, David, Tang, Jing, Bychkov, Dmitrii, Kontro, Mika, Parsons, Alun, Suvela, Minna, Mayoral Safont, Mireia, Porkka, Kimmo, Aittokallio, Tero, Kallioniemi, Olli, McCormack, Emmet, Gjertsen, Bjørn T., Wennerberg, Krister, Knowles, Jonathan, and Heckman, Caroline A.
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- 2017
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8. Systematic drug sensitivity testing reveals synergistic growth inhibition by dasatinib or mTOR inhibitors with paclitaxel in ovarian granulosa cell tumor cells
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Haltia, Ulla-Maija, Andersson, Noora, Yadav, Bhagwan, Färkkilä, Anniina, Kulesskiy, Evgeny, Kankainen, Matti, Tang, Jing, Bützow, Ralf, Riska, Annika, Leminen, Arto, Heikinheimo, Markku, Kallioniemi, Olli, Unkila-Kallio, Leila, Wennerberg, Krister, Aittokallio, Tero, and Anttonen, Mikko
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- 2017
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9. Elitism: normative ethics of local organisation in community-based natural resources management
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Yadav, Bhagwan Dutta, Bigsby, Hugh R., and MacDonald, Ian
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- 2016
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10. Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer
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Tang, Jing, Gautam, Prson, Gupta, Abhishekh, He, Liye, Timonen, Sanna, Akimov, Yevhen, Wang, Wenyu, Szwajda, Agnieszka, Jaiswal, Alok, Turei, Denes, Yadav, Bhagwan, Kankainen, Matti, Saarela, Jani, Saez-Rodriguez, Julio, Wennerberg, Krister, and Aittokallio, Tero
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- 2019
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11. Systematic Mapping of Kinase Addiction Combinations in Breast Cancer Cells by Integrating Drug Sensitivity and Selectivity Profiles
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Szwajda, Agnieszka, Gautam, Prson, Karhinen, Leena, Jha, Sawan Kumar, Saarela, Jani, Shakyawar, Sushil, Turunen, Laura, Yadav, Bhagwan, Tang, Jing, Wennerberg, Krister, and Aittokallio, Tero
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- 2015
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12. How can poor and disadvantaged households get an opportunity to become a leader in community forestry in Nepal?
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Yadav, Bhagwan Dutta, Bigsby, Hugh, and MacDonald, Ian
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- 2015
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13. The relative distribution: An alternative approach to evaluate the impact of community level forestry organisations on households
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Yadav, Bhagwan Dutta, Bigsby, Hugh, and MacDonald, Ian
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- 2015
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14. Ruthenium (II) complexes bearing N‐heterocyclic carbene‐based C^N donor sets in dye‐sensitized solar cells.
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Mary, Angelina, Jain, Nimisha, Sakla, Rahul, Jose, D. Amilan, Yadav, Bhagwan Sahai, and Naziruddin, Abbas Raja
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DYE-sensitized solar cells ,RUTHENIUM ,CHARGE exchange ,VISIBLE spectra ,ELECTRON density ,PHOTOINDUCED electron transfer ,CHARGE transfer - Abstract
We present the syntheses of ruthenium (II) complexes bearing an N‐heterocyclic carbene (NHC)‐based C^N donor set and an NCS ligand and evaluate their use as photosensitizers in dye‐sensitized solar cells (DSSCs). These complexes deploy a monocarboxylic acid‐functionalized terpyridine (tpy)/phenyl‐tpy to anchor with the TiO2 of the photoanodes. Results show that the complexes devoid of the phenyl spacer between the acid anchor and the tpy harvest the visible light more effectively. Absorption of the visible light transfers the electron density from the ruthenium, NHC, and the NCS donors to the tpy acceptor (1MRuLdonorLacceptorCT). Stronger MRuLdonorσ‐bonds in the complexes with opposite NHC and tpy ligand configuration render facile ruthenium‐centered oxidation. In contrast, the metal‐centered oxidation of complexes with trans‐oriented NHC and NCS ligands is relatively difficult. However, these complexes display higher photon conversion efficiency (PCE) in DSSCs. One of them shows PCE of 3.44%, which is ~70% of the standard N3 dye, under similar conditions. A longer electron lifetime and the lowest charge transfer resistance at the TiO2/electrolyte interface derived from the electrochemical impedance spectra accounts for the enhanced PCE. Insights into the oxidized dye regeneration in a DSSC setup, obtained from the computed Hirshfeld charges and spin density, depict the essential role of iodide anion in dye regeneration. This report summarizes our investigation of photophysics, electronic structure calculations, and the electrochemical study of all newly prepared complexes and their use as photosensitizers in DSSCs. [ABSTRACT FROM AUTHOR]
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- 2023
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15. A cross-sectional study on the role of hematological and inflammatory biomarkers as predictor of mortality at the time of admission among COVID-19 patients.
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Totade, Sanjay Kumar, Daheria, Chanchlesh, Morya, Rajesh Kumar, Yadav, Bhagwan Singh, Varma, Amit, and Toppo, Neelam
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COVID-19 ,NEUTROPHIL lymphocyte ratio ,MEDICAL personnel ,COVID-19 pandemic ,BIOMARKERS ,MEDULLARY thyroid carcinoma - Abstract
Whole world experienced COVID-19 pandemic with more than 155 million cases and >3.4 million deaths. Vasculitis and immune system activation plays a critical role in pathogenesis, especially in severely ill and non-survivors COVID-19 patients. Aims and Objectives: The aim of the study was to establish the role of hematological indices and inflammatory biomarker as predictors of mortality among non-survivor and survivor COVID-19 cases at the time of admission. Materials and Methods: The cross-sectional study was conducted at a dedicated COVID-19 referral hospital from July 2020 to August 2020, among 300 real time-polymerase chain reaction confirmed COVID-19 cases. Demographic, clinical, comorbidity, laboratory investigation, and outcome data were collected from patient's medical record. Outcome variables -- discharged (survived) or death (non-survived) were considered for comparison of various hematological indices and inflammatory biomarkers. Data are represented as median, IQR
(Q1-Q3) and difference between median and proportions were calculated by Mann--Whitney U-test and χ² test. A predictive power of laboratory parameters between survivors and non-survivors was evaluated using receiver operant curve (ROC) analysis and area under the ROC curve (AUC). Results: The median age of non-survivors was significantly higher than survivors. Hypertension was significantly associated with non-survivors. Hematological parameters such as total leukocyte count, absolute neutrophil count, Neutrophil: Lymphocyte ratio were significantly increased with lymphocytopenia (P=0.001), and Inflammatory biomarkers such as C-reactive protein (CRP), lactate dehydrogenase, D-dimer, ferritin, procalcitonin, and NT-Pro BNP, all were significantly increased in non-survivors patients (P=0.001). CRP and neutrophil lymphocyte ratio (NLR) showed "Good" predictive value for mortality with cutoff value of 74.0 mg/l (AUC=0.841, Sensitivity=80.4%, Specificity=73.0%) and 5.65 (AUC=0.805, Sensitivity=76.1%, Specificity=73.0%), respectively. Pro-BNP showed "Fair" predictive value for mortality with cutoff value of 330.5 pg/ml (AUC=0.726, Sensitivity=73.9%, Specificity=58.2%). Conclusion: We suggest that CRP, NLR, and Pro-BNP can be used as a screening tool to predict mortality in COVID-19 patients for timely intervention to save valuable life, especially when sensitivity toward severity of COVID-19 among medical health professionals and general public is on decline. [ABSTRACT FROM AUTHOR]- Published
- 2023
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16. Consistency in drug response profiling
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Mpindi, John Patrick, Yadav, Bhagwan, Östling, Päivi, Gautam, Prson, Malani, Disha, Murumägi, Astrid, Hirasawa, Akira, Kangaspeska, Sara, Wennerberg, Krister, Kallioniemi, Olli, and Aittokallio, Tero
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- 2016
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17. Quantitative scoring of differential drug sensitivity for individually optimized anticancer therapies
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Yadav, Bhagwan, Pemovska, Tea, Szwajda, Agnieszka, Kulesskiy, Evgeny, Kontro, Mika, Karjalainen, Riikka, Majumder, Muntasir Mamun, Malani, Disha, Murumägi, Astrid, Knowles, Jonathan, Porkka, Kimmo, Heckman, Caroline, Kallioniemi, Olli, Wennerberg, Krister, and Aittokallio, Tero
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- 2014
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18. Evaluation of hematological, coagulation and inflammatory biomarker's role in predicting the severity of disease in patients with COVID-19, admitted in designated COVID-19 hospital of central India.
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Lokwani, D, Yadav, Bhagwan, Bharti, Sanjay, Gupta, Vivek, and Toppo, Neelam
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- 2021
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19. Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.
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Kelkka, Tiina, Savola, Paula, Bhattacharya, Dipabarna, Huuhtanen, Jani, Lönnberg, Tapio, Kankainen, Matti, Paalanen, Kirsi, Tyster, Mikko, Lepistö, Maija, Ellonen, Pekka, Smolander, Johannes, Eldfors, Samuli, Yadav, Bhagwan, Khan, Sofia, Koivuniemi, Riitta, Sjöwall, Christopher, Elo, Laura L., Lähdesmäki, Harri, Maeda, Yuka, and Nishikawa, Hiroyashi
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T cells ,T cell receptors ,JOINTS (Anatomy) ,JOINT diseases ,SOMATIC mutation ,AUTOIMMUNE diseases ,EXPERIMENTAL arthritis - Abstract
Rheumatoid arthritis (RA) is a complex autoimmune disease targeting synovial joints. Traditionally, RA is divided into seropositive (SP) and seronegative (SN) disease forms, the latter consisting of an array of unrelated diseases with joint involvement. Recently, we described a severe form of SN-RA that associates with characteristic joint destruction. Here, we sought biological characteristics to differentiate this rare but aggressive anti-citrullinated peptide antibody-negative destructive RA (CND-RA) from early seropositive (SP-RA) and seronegative rheumatoid arthritis (SN-RA). We also aimed to study cytotoxic CD8+ lymphocytes in autoimmune arthritis. CND-RA, SP-RA and SN-RA were compared to healthy controls to reveal differences in T-cell receptor beta (TCRβ) repertoire, cytokine levels and autoantibody repertoires. Whole-exome sequencing (WES) followed by single-cell RNA-sequencing (sc-RNA-seq) was performed to study somatic mutations in a clonally expanded CD8+ lymphocyte population in an index patient. A unique TCRβ signature was detected in CND-RA patients. In addition, CND-RA patients expressed higher levels of the bone destruction-associated TNFSF14 cytokine. Blood IgG repertoire from CND-RA patients recognized fewer endogenous proteins than SP-RA patients' repertoires. Using WES, we detected a stable mutation profile in the clonally expanded CD8+ T-cell population characterized by cytotoxic gene expression signature discovered by sc-RNA-sequencing. Our results identify CND-RA as an independent RA subset and reveal a CND-RA specific TCR signature in the CD8+ lymphocytes. Improved classification of seronegative RA patients underlines the heterogeneity of RA and also, facilitates development of improved therapeutic options for the treatment resistant patients. [ABSTRACT FROM AUTHOR]
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- 2020
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20. Immunological monitoring of newly diagnosed CML patients treated with bosutinib or imatinib first-line.
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Kreutzman, Anna, Yadav, Bhagwan, Brummendorf, Tim H., Gjertsen, Bjorn Tore, Hee Lee, Moon, Janssen, Jeroen, Kasanen, Tiina, Koskenvesa, Perttu, Lofti, Kourosh, Markevärn, Berit, Olsson-Strömberg, Ulla, Stentoft, Jesper, Stenke, Leif, Söderlund, Stina, Udby, Lene, Richter, Johan, Hjorth-Hansen, Henrik, and Mustjoki, Satu
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KILLER cells , *CHRONIC myeloid leukemia , *PSYCHONEUROIMMUNOLOGY , *BLOOD proteins , *T cells , *THERAPEUTICS - Abstract
Changes in the immune system induced by tyrosine kinase inhibitors (TKI) have been shown to positively correlate with therapy responses in chronic myeloid leukemia (CML). However, only a few longitudinal studies exist and no randomized comparisons between two TKIs have been reported. Therefore, we prospectively analyzed the immune system of newly diagnosed CML patients treated with imatinib (n = 20) or bosutinib (n = 13), that participated in the randomized BFORE trial (NCT02130557). Comprehensive immunophenotyping, plasma protein profiling, and functional assays to determine activation levels of T and NK cells were performed at diagnosis, 3, and 12 months after therapy start. All results were correlated with clinical parameters such as Sokal risk and BCR-ABL load measured according to IS%. At diagnosis, low Sokal risk CML patients had a higher frequency of cytotoxic cells (CD8 + T and NK cells), increased cytotoxic potential of NK cells and lower frequency of naïve and central memory CD4 + T cells. Further, soluble plasma protein profile divided patients into two distinct clusters with different disease burden at diagnosis. During treatment, BCR-ABL IS% correlated with immunological parameters such as plasma proteins, together with different memory subsets of CD4+ and CD8 + T cells. Interestingly, the proportion and cytotoxic potential of NK cells together with several soluble proteins increased during imatinib treatment. In contrast, no major immunological changes were observed during bosutinib treatment. In conclusion, imatinib and bosutinib were shown to have differential effects on the immune system in this randomized clinical trial. Increased number and function of NK cells were especially observed during imatinib therapy. [ABSTRACT FROM AUTHOR]
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- 2019
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21. Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
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Potdar, Swapnil, Ianevski, Aleksandr, Mpindi, John-Patrick, Bychkov, Dmitrii, Fiere, Clément, Ianevski, Philipp, Yadav, Bhagwan, Wennerberg, Krister, Aittokallio, Tero, Kallioniemi, Olli, Saarela, Jani, and Östling, Päivi
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QUALITY control ,DATA analysis ,DATA quality ,CURVE fitting ,ELECTRONIC data processing ,CHEMICAL potential - Abstract
Summary High-throughput screening (HTS) enables systematic testing of thousands of chemical compounds for potential use as investigational and therapeutic agents. HTS experiments are often conducted in multi-well plates that inherently bear technical and experimental sources of error. Thus, HTS data processing requires the use of robust quality control procedures before analysis and interpretation. Here, we have implemented an open-source analysis application, Breeze, an integrated quality control and data analysis application for HTS data. Furthermore, Breeze enables a reliable way to identify individual drug sensitivity and resistance patterns in cell lines or patient-derived samples for functional precision medicine applications. The Breeze application provides a complete solution for data quality assessment, dose–response curve fitting and quantification of the drug responses along with interactive visualization of the results. Availability and implementation The Breeze application with video tutorial and technical documentation is accessible at https://breeze.fimm.fi ; the R source code is publicly available at https://github.com/potdarswapnil/Breeze under GNU General Public License v3.0. Contact swapnil.potdar@helsinki.fi Supplementary information Supplementary data are available at Bioinformatics online. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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22. PP2A inhibition is a druggable MEK inhibitor resistance mechanism in KRAS-mutant lung cancer cells.
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Kauko, Otto, O'Connor, Caitlin M., Kulesskiy, Evgeny, Sangodkar, Jaya, Aakula, Anna, Izadmehr, Sudeh, Yetukuri, Laxman, Yadav, Bhagwan, Padzik, Artur, Laajala, Teemu Daniel, Haapaniemi, Pekka, Momeny, Majid, Varila, Taru, Ohlmeyer, Michael, Aittokallio, Tero, Wennerberg, Krister, Narla, Goutham, and Westermarck, Jukka
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PHOSPHOPROTEIN phosphatases ,PROTEIN phosphatase inhibitors ,PROTEIN kinase inhibitors ,CANCER cell analysis ,LABORATORY mice - Abstract
Pharmacological PP2A activation is a druggable approach to overcome MEK inhibitor resistance. An oncogene's enemy is our friend: Inhibitors of oncogenic kinases such as MEK are becoming increasingly common as an approach to treating cancer, but these drugs' effectiveness is often short-lived, as tumors develop resistance. Phosphatases, a class of proteins whose activity counteracts that of kinases, are not routinely targeted by cancer therapies but may offer an alternative approach to treatment in some cases. In particular, Kauko et al. determined that the loss of a phosphatase called PP2A can play a major role in resistance to MEK inhibition in lung cancer. The authors also selected a compound that activates PP2A and demonstrated that it can effectively combine with a MEK inhibitor and overcome drug resistance in multiple mouse models of human lung cancer. Kinase inhibitor resistance constitutes a major unresolved clinical challenge in cancer. Furthermore, the role of serine/threonine phosphatase deregulation as a potential cause for resistance to kinase inhibitors has not been thoroughly addressed. We characterize protein phosphatase 2A (PP2A) activity as a global determinant of KRAS-mutant lung cancer cell resistance across a library of >200 kinase inhibitors. The results show that PP2A activity modulation alters cancer cell sensitivities to a large number of kinase inhibitors. Specifically, PP2A inhibition ablated mitogen-activated protein kinase kinase (MEK) inhibitor response through the collateral activation of AKT/mammalian target of rapamycin (mTOR) signaling. Combination of mTOR and MEK inhibitors induced cytotoxicity in PP2A-inhibited cells, but even this drug combination could not abrogate MYC up-regulation in PP2A-inhibited cells. Treatment with an orally bioavailable small-molecule activator of PP2A DT-061, in combination with the MEK inhibitor AZD6244, resulted in suppression of both p-AKT and MYC, as well as tumor regression in two KRAS-driven lung cancer mouse models. DT-061 therapy also abrogated MYC-driven tumorigenesis. These data demonstrate that PP2A deregulation drives MEK inhibitor resistance in KRAS-mutant cells. These results emphasize the need for better understanding of phosphatases as key modulators of cancer therapy responses. [ABSTRACT FROM AUTHOR]
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- 2018
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23. Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target.
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Dufva, Olli, Kankainen, Matti, Kelkka, Tiina, Sekiguchi, Nodoka, Awad, Shady Adnan, Eldfors, Samuli, Yadav, Bhagwan, Kuusanmäki, Heikki, Malani, Disha, Andersson, Emma I., Pietarinen, Paavo, Saikko, Leena, Kovanen, Panu E., Ojala, Teija, Lee, Dean A., Loughran Jr., Thomas P., Nakazawa, Hideyuki, Suzumiya, Junji, Suzuki, Ritsuro, and Young Hyeh Ko
- Abstract
Aggressive natural killer-cell (NK-cell) leukemia (ANKL) is an extremely aggressive malignancy with dismal prognosis and lack of targeted therapies. Here, we elucidate the molecular pathogenesis of ANKL using a combination of genomic and drug sensitivity profiling. We study 14 ANKL patients using whole-exome sequencing (WES) and identify mutations in STAT3 (21%) and RAS-MAPK pathway genes (21%) as well as in DDX3X (29%) and epigenetic modifiers (50%). Additional alterations include JAK-STAT copy gains and tyrosine phosphatase mutations, which we show recurrent also in extranodal NK/T-cell lymphoma, nasal type (NKTCL) through integration of public genomic data. Drug sensitivity profiling further demonstrates the role of the JAK-STAT pathway in the pathogenesis of NK-cell malignancies, identifying NK cells to be highly sensitive to JAK and BCL2 inhibition compared to other hematopoietic cell lineages. Our results provide insight into ANKL genetics and a framework for application of targeted therapies in NK-cell malignancies. [ABSTRACT FROM AUTHOR]
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- 2018
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24. Rules of benefit distribution: A dynamic impact on Nepalese community forestry organizations.
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Yadav, Bhagwan Dutta, Bigsby, Hugh, and MacDonald, Ian
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COMMUNITY forestry , *DECISION making , *FOREST products , *ELITE (Social sciences) , *ASSOCIATIONS, institutions, etc. - Abstract
Participatory approach has been an official part of Community Forestry (CF) since 1989 when Master Plan for the Forestry Sector (1989) was introduced in Nepal. However, many problems related to benefit distribution from CF have emerged because of the way decision-making is influenced by social and institutional structures present at community level, particularly in terms of dominance by wealthy and caste elite to formulate rules. The study used a conceptual approach using elite theory with models that looked at Executive Committee (EC) that used to formulate distribution rules. The study uses Community Forestry User Groups (CFUGs) level data from 31 CFUGs and household data from 310 households in Baglung district, Nepal. The study examined the factors linked with rules of distribution that determined the relative distribution of forest products. The higher the representation of the poor and disadvantaged households on the EC, the greater the benefits to them in terms of greater quantities distributed and longer collection periods. The policy implication of this study is that the forestry organizations help the poor and underprivileged households to build up capacity to undertake leadership roles that influence the formulation of rules through which organizational elite models in favor to them become part of the elite decision-making. [ABSTRACT FROM AUTHOR]
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- 2017
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25. Identification of selective cytotoxic and synthetic lethal drug responses in triple negative breast cancer cells.
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Gautam, Prson, Karhinen, Leena, Szwajda, Agnieszka, Kumar Jha, Sawan, Yadav, Bhagwan, Aittokallio, Tero, and Wennerberg, Krister
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DRUG toxicity ,DRUG side effects ,ANTINEOPLASTIC agents ,CANCER cell analysis ,TRIPLE-negative breast cancer ,CELL lines ,CELL-mediated cytotoxicity - Abstract
Background: Triple negative breast cancer (TNBC) is a highly heterogeneous and aggressive type of cancer that lacks effective targeted therapy. Despite detailed molecular profiling, no targeted therapy has been established. Hence, with the aim of gaining deeper understanding of the functional differences of TNBC subtypes and how that may relate to potential novel therapeutic strategies, we studied comprehensive anticancer-agent responses among a panel of TNBC cell lines. Method: The responses of 301 approved and investigational oncology compounds were measured in 16 TNBC cell lines applying a functional profiling approach. To go beyond the standard drug viability effect profiling, which has been used in most chemosensitivity studies, we utilized a multiplexed readout for both cell viability and cytotoxicity, allowing us to differentiate between cytostatic and cytotoxic responses. Results: Our approach revealed that most single-agent anti-cancer compounds that showed activity for the viability readout had no or little cytotoxic effects. Major compound classes that exhibited this type of response included anti-mitotics, mTOR, CDK, and metabolic inhibitors, as well as many agents selectively inhibiting oncogene-activated pathways. However, within the broad viability-acting classes of compounds, there were often subsets of cell lines that responded by cell death, suggesting that these cells are particularly vulnerable to the tested substance. In those cases we could identify differential levels of protein markers associated with cytotoxic responses. For example, PAI-1, MAPK phosphatase and Notch-3 levels associated with cytotoxic responses to mitotic and proteasome inhibitors, suggesting that these might serve as markers of response also in clinical settings. Furthermore, the cytotoxicity readout highlighted selective synergistic and synthetic lethal drug combinations that were missed by the cell viability readouts. For instance, the MEK inhibitor trametinib synergized with PARP inhibitors. Similarly, combination of two non-cytotoxic compounds, the rapamycin analog everolimus and an ATP-competitive mTOR inhibitor dactolisib, showed synthetic lethality in several mTOR-addicted cell lines. Conclusions: Taken together, by studying the combination of cytotoxic and cytostatic drug responses, we identified a deeper spectrum of cellular responses both to single agents and combinations that may be highly relevant for identifying precision medicine approaches in TNBC as well as in other types of cancers. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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26. To Assess the Quality of Groundwater and its Implication on Human Health in Niwai Tehsil, Tonk, Rajasthan, India.
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Yadav, Bhagwan Sahai and Garg, Abha
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GROUNDWATER quality ,FLUOROSIS ,POLYETHYLENE ,DISSOLVED organic matter ,FLUORIDES - Abstract
There is a severe fluoride problem is Niwai Tehsil of Tonk district. Populaces are suffering from dental fluorosis and skeletal fluorosis. So that physico-chemical study of 80 villages was done. The ground water samples collected in clean polyethylene bottles were analyzed for different parameters such as pH, Total Alkalinity, Fluoride (F
- ), Nitrate (NO3 - ), Total Dissolved Solids (TDS), Chloride (Cl- ), Total Hardness (TH), Electrical Conductivity (EC), Ca-H, Mg-H by using standard techniques. Results showed that fluoride was found even up to the alarming limit of 14.62ppm. Minimum (1.10ppm) and maximum (14.62ppm) concentration of Fluoride was observed from Khendewat and Seepura villages respectively. [ABSTRACT FROM AUTHOR]- Published
- 2014
27. The Quality of Groundwater in Jaipur Region with Emphasis to Fluoride Concentration.
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Yadav, Bhagwan Sahai and Garg, Abha
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GROUNDWATER quality ,FLUORIDES ,FLUOROSIS ,ELECTRIC conductivity ,WATER alkalinity - Abstract
The problem of high fluoride in groundwater is one of the most important health related geo-environmental issue. It is beneficial up to certain limits but excess intake (i.e. >1.5mg/L) may cause fluorosis. Fluoride in groundwater was studied in Sanganer tehsil of Jaipur district. 18 villages were under surveillance. Groundwater samples were periodically collected and analyzed for physicochemical parameters including Fluoride (F-), pH, Electrical Conductivity (EC), Total Dissolved Solid (TDS), total hardness, Calcium (Ca
2+ ), Chloride (Cl-) and alkalinity. The analytical results revealed considerable variations in the chemical composition of water samples. Fluoride concentration varies from 0.20 to 6.45 mg/L. [ABSTRACT FROM AUTHOR]- Published
- 2014
28. Targeting Apoptosis Pathways With BCL2 and MDM2 Inhibitors in Adult B-cell Acute Lymphoblastic Leukemia.
- Author
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Hohtari, Helena, Kankainen, Matti, Adnan-Awad, Shady, Yadav, Bhagwan, Potdar, Swapnil, Ianevski, Aleksandr, Dufva, Olli, Heckman, Caroline, Sexl, Veronika, Kytölä, Soili, Mustjoki, Satu, and Porkka, Kimmo
- Published
- 2022
- Full Text
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29. Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.
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Tang, Jing, Karhinen, Leena, Xu, Tao, Szwajda, Agnieszka, Yadav, Bhagwan, Wennerberg, Krister, and Aittokallio, Tero
- Subjects
DRUG efficacy ,PHARMACODYNAMICS ,DRUG therapy ,CANCER treatment ,SURVIVAL behavior (Humans) - Abstract
A recent trend in drug development is to identify drug combinations or multi-target agents that effectively modify multiple nodes of disease-associated networks. Such polypharmacological effects may reduce the risk of emerging drug resistance by means of attacking the disease networks through synergistic and synthetic lethal interactions. However, due to the exponentially increasing number of potential drug and target combinations, systematic approaches are needed for prioritizing the most potent multi-target alternatives on a global network level. We took a functional systems pharmacology approach toward the identification of selective target combinations for specific cancer cells by combining large-scale screening data on drug treatment efficacies and drug-target binding affinities. Our model-based prediction approach, named TIMMA, takes advantage of the polypharmacological effects of drugs and infers combinatorial drug efficacies through system-level target inhibition networks. Case studies in MCF-7 and MDA-MB-231 breast cancer and BxPC-3 pancreatic cancer cells demonstrated how the target inhibition modeling allows systematic exploration of functional interactions between drugs and their targets to maximally inhibit multiple survival pathways in a given cancer type. The TIMMA prediction results were experimentally validated by means of systematic siRNA-mediated silencing of the selected targets and their pairwise combinations, showing increased ability to identify not only such druggable kinase targets that are essential for cancer survival either individually or in combination, but also synergistic interactions indicative of non-additive drug efficacies. These system-level analyses were enabled by a novel model construction method utilizing maximization and minimization rules, as well as a model selection algorithm based on sequential forward floating search. Compared with an existing computational solution, TIMMA showed both enhanced prediction accuracies in cross validation as well as significant reduction in computation times. Such cost-effective computational-experimental design strategies have the potential to greatly speed-up the drug testing efforts by prioritizing those interventions and interactions warranting further study in individual cancer cases. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
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30. High miR-30 Expression Associates with Improved Breast Cancer Patient Survival and Treatment Outcome.
- Author
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Jamshidi, Maral, Fagerholm, Rainer, Muranen, Taru A., Kaur, Sippy, Potdar, Swapnil, Khan, Sofia, Netti, Eliisa, Mpindi, John-Patrick, Yadav, Bhagwan, Kiiski, Johanna I., Aittomäki, Kristiina, Heikkilä, Päivi, Saarela, Jani, Bützow, Ralf, Blomqvist, Carl, and Nevanlinna, Heli
- Subjects
BREAST cancer prognosis ,SURVIVAL ,CONFIDENCE intervals ,DOXORUBICIN ,HETEROCYCLIC compounds ,MICRORNA ,METASTASIS ,GENE expression ,TREATMENT effectiveness ,CANCER patients ,DESCRIPTIVE statistics - Abstract
Simple Summary: Previous research on the miR-30 family and breast cancer patient survival and on miR-30-related chemosensitivity prompted us to design a comprehensive study on the role of the miR-30 family in general and on miR-30d in particular in breast cancer. We present a study consisting of a tumor microarray analysis of 1238 breast cancer patients, a survival analysis, a drug-sensitivity screen with six breast cancer cell lines, and an in-silico pathway analysis. In our analysis, high miR-30d expression was associated with improved survival in breast cancer patients with aggressive tumor phenotypes. In the drug-sensitivity analysis, ectopic expression of miR-30 family members sensitized the cell lines to the treatment. The pathway analysis based on miRNA and mRNA expression in the METABRIC data suggested that the miR-30 family may have an inhibitory role in pathways contributing to EMT and metastasis. Our results suggest prognostic and predictive potential for the miR-30 family for further investigation. Deregulated miRNA expression has been suggested in several stages of breast cancer pathogenesis. We have studied the miR-30 family, in particular miR-30d, in relation to breast cancer patient survival and treatment outcomes. With tumor specimens from 1238 breast cancer patients, we analyzed the association of miR-30d expression with tumor characteristics with the 5-year occurrence of breast cancer-specific death or distant metastasis (BDDM), and with 10-year breast cancer survival (BCS). We conducted a two-stage drug-screen to investigate the impact of miR-30 family members (miR-30a-30e) on sensitivity to doxorubicin and lapatinib in six breast cancer cell lines HCC1937, HCC1954, MDA-MB-361, MCF7, MDA-MB-436 and CAL-120, using drug sensitivity scores (DSS) to compare the miR-30 family mimics to their specific inhibitors. The study was complemented with Ingenuity Pathway Analysis (IPA) with the METABRIC data. We found that while high miR-30d expression is typical for aggressive tumors, it predicts better metastasis-free (p
BDDM = 0.035, HR = 0.63, 95% CI = 0.4–0.9) and breast cancer-specific survival (pBCS = 0.018, HR = 0.61, 95% CI = 0.4–0.9), especially in HER2-positive (pBDDM = 0.0009), ER-negative (pBDDM = 0.003), p53-positive (pBDDM = 0.011), and highly proliferating (pBDDM = 0.0004) subgroups, and after adjuvant chemotherapy (pBDDM = 0.035). MiR-30d predicted survival independently of standard prognostic markers (pBDDM = 0.0004). In the drug-screening test, the miR-30 family sensitized the HER2-positive HCC1954 cell line to lapatinib (p < 10−2 ) and HCC1937, MDA-MB-361, MDA-MB-436 and CAL120 to doxorubicin (p < 10−4 ) with an opposite impact on MCF7. According to the pathway analysis, the miR-30 family has a suppressive effect on cell motility and metastasis in breast cancer. Our results suggest prognostic and predictive potential for the miR-30 family, which warrants further investigation. [ABSTRACT FROM AUTHOR]- Published
- 2021
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31. Phosphoproteome and drug-response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1.
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Kauko, Otto, Imanishi, Susumu Y., Kulesskiy, Evgeny, Yetukuri, Laxman, Laajala, Teemu Daniel, Sharma, Mukund, Pavic, Karolina, Aakula, Anna, Rupp, Christian, Jumppanen, Mikael, Haapaniemi, Pekka, Ruan, Luyao, Yadav, Bhagwan, Suni, Veronika, Varila, Taru, Corthals, Garry L., Reimand, Jüri, Wennerberg, Krister, Aittokallio, Tero, and Westermarck, Jukka
- Subjects
- *
PHOSPHOPROTEIN phosphatases , *PHOSPHATASE inhibitors , *RNA splicing , *PHOSPHOPROTEINS , *PROTEINS - Abstract
Protein phosphatase 2A (PP2A) critically regulates cell signaling and is a human tumor suppressor. PP2A complexes are modulated by proteins such as cancerous inhibitor of protein phosphatase 2A (CIP2A), protein phosphatase methylesterase 1 (PME-1), and SET nuclear proto-oncogene (SET) that often are deregulated in cancers. However, how they impact cellular phosphorylation and how redundant they are in cellular regulation is poorly understood. Here, we conducted a systematic phosphoproteomics screen for phosphotargets modulated by siRNA-mediated depletion of CIP2A, PME-1, and SET (to reactivate PP2A) or the scaffolding A-subunit of PP2A (PPP2R1A) (to inhibit PP2A) in HeLa cells. We identified PP2Amodulated targets in diverse cellular pathways, including kinase signaling, cytoskeleton, RNA splicing, DNA repair, and nuclear lamina. The results indicate nonredundancy among CIP2A, PME-1, and SET in phosphotarget regulation. Notably, PP2A inhibition or reactivation affected largely distinct phosphopeptides, introducing a concept of nonoverlapping phosphatase inhibition- and activation-responsive sites (PIRS and PARS, respectively). This phenomenon is explained by the PPP2R1A inhibition impacting primarily dephosphorylated threonines, whereas PP2A reactivation results in dephosphorylation of clustered and acidophilic sites. Using comprehensive drug-sensitivity screening in PP2A-modulated cells to evaluate the functional impact of PP2A across diverse cellular pathways targeted by these drugs, we found that consistent with global phosphoproteome effects, PP2A modulations broadly affect responses to more than 200 drugs inhibiting a broad spectrum of cancerrelevant targets. These findings advance our understanding of the phosphoproteins, pharmacological responses, and cellular processes regulated by PP2A modulation and may enable the development of combination therapies. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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32. Comprehensive Drug Testing of Patient-derived Conditionally Reprogrammed Cells from Castration-resistant Prostate Cancer.
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Saeed, Khalid, Rahkama, Vesa, Eldfors, Samuli, Bychkov, Dmitry, Mpindi, John Patrick, Yadav, Bhagwan, Paavolainen, Lassi, Aittokallio, Tero, Heckman, Caroline, Wennerberg, Krister, Peehl, Donna M., Horvath, Peter, Mirtti, Tuomas, Rannikko, Antti, Kallioniemi, Olli, Östling, Päivi, and af Hällström, Taija M.
- Subjects
- *
DRUG use testing , *PROSTATE cancer patients , *CANCER cell analysis , *CASTRATION , *PROSTATE cancer treatment - Abstract
Background Technology development to enable the culture of human prostate cancer (PCa) progenitor cells is required for the identification of new, potentially curative therapies for PCa. Objective We established and characterized patient-derived conditionally reprogrammed cells (CRCs) to assess their biological properties and to apply these to test the efficacies of drugs. Design, setting, and participants CRCs were established from seven patient samples with disease ranging from primary PCa to advanced castration-resistant PCa (CRPC). The CRCs were characterized by genomic, transcriptomic, protein expression, and drug profiling. Outcome measurements and statistical analysis The phenotypic quantification of the CRCs was done based on immunostaining followed by image analysis with Advanced Cell Classifier using Random Forest supervised machine learning. Copy number aberrations (CNAs) were called from whole-exome sequencing and transcriptomics using in-house pipelines. Dose-response measurements were used to generate multiparameter drug sensitivity scores using R-statistical language. Results and limitations We generated six benign CRC cultures which all had an androgen receptor-negative, basal/transit-amplifying phenotype with few CNAs. In three-dimensional cell culture, these cells could re-express the androgen receptor. The CRCs from a CRPC patient (HUB.5) displayed multiple CNAs, many of which were shared with the parental tumor. We carried out high-throughput drug-response studies with 306 emerging and clinical cancer drugs. Using the benign CRCs as controls, we identified the Bcl-2 family inhibitor navitoclax as the most potent cancer-specific drug for the CRCs from a CRPC patient. Other drug efficacies included taxanes, mepacrine, and retinoids. Conclusions Comprehensive cancer pharmacopeia-wide drug testing of CRCs from a CRPC patient highlighted both known and novel drug sensitivities in PCa, including navitoclax, which is currently being tested in clinical trials of CRPC. Patient summary We describe an approach to generate patient-derived cancer cells from advanced prostate cancer and apply such cells to discover drugs that could be applied in clinical trials for castration-resistant prostate cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
33. Obatoclax, Saliphenylhalamide, and Gemcitabine Inhibit Influenza A Virus Infection.
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Denisova, Oxana V., Kakkola, Laura, Lin Feng, Stenman, Jakob, Nagaraj, Ashwini, Lampe, Johanna, Yadav, Bhagwan, Aittokallio, Tero, Kaukinen, Pasi, Ahola, Tero, Kuivanen, Suvi, Vapalahti, Olli, Kantele, Anu, Tynell, Janne, Julkunen, Ilkka, Kallio-Kokko, Hannimari, Paavilainen, Henrik, Hukkanen, Veijo, Elliott, Richard M., and De Brabander, Jef K.
- Subjects
- *
INFLUENZA A virus , *RNA , *ANTIVIRAL agents , *INFLUENZAVIRUS A , *DEATH (Biology) - Abstract
Influenza A viruses (IAVs) infect humans and cause significant morbidity and mortality. Different treatment options have been developed; however, these were insufficient during recent IAV outbreaks. Here, we conducted a targeted chemical screen in human nonmalignant cells to validate known and search for novel host-directed antivirals. The screen validated saliphenylhalamide (SaliPhe) and identified two novel anti-IAV agents, obatoclax and gemcitabine. Further experiments demonstrated that Mcl-1 (target of obatoclax) provides a novel host target for IAV treatment. Moreover, we showed that obatoclax and SaliPhe inhibited IAV uptake and gemcitabine suppressed viral RNA transcription and replication. These compounds possess broad spectrum antiviral activity, although their antiviral efficacies were virus-, cell type-, and species-specific. Altogether, our results suggest that phase II obatoclax, investigational SaliPhe, and FDA/EMEA-approved gemcitabine represent potent antiviral agents. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
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