10 results on '"Windham, Ian A."'
Search Results
2. In vitro antibacterial activity of nimbolide against Helicobacter pylori
- Author
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Wylie, Marina R., Windham, Ian H., Blum, Faith C., Wu, Hannah, and Merrell, D. Scott
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- 2022
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3. APOE traffics to astrocyte lipid droplets and modulates triglyceride saturation and droplet size.
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Windham, Ian A., Powers, Alex E., Ragusa, Joey V., Wallace, E. Diane, Zanellati, Maria Clara, Williams, Victoria H., Wagner, Colby H., White, Kristen K., and Cohen, Sarah
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DISEASE risk factors , *LIPIDS , *ALZHEIMER'S disease , *APOLIPOPROTEIN E4 , *TRIGLYCERIDES - Abstract
The E4 variant of APOE strongly predisposes individuals to late-onset Alzheimer's disease. We demonstrate that in response to lipogenesis, apolipoprotein E (APOE) in astrocytes can avoid translocation into the endoplasmic reticulum (ER) lumen and traffic to lipid droplets (LDs) via membrane bridges at ER-LD contacts. APOE knockdown promotes fewer, larger LDs after a fatty acid pulse, which contain more unsaturated triglyceride after fatty acid pulse-chase. This LD size phenotype was rescued by chimeric APOE that targets only LDs. Like APOE depletion, APOE4-expressing astrocytes form a small number of large LDs enriched in unsaturated triglyceride. Additionally, the LDs in APOE4 cells exhibit impaired turnover and increased sensitivity to lipid peroxidation. Our data indicate that APOE plays a previously unrecognized role as an LD surface protein that regulates LD size and composition. APOE4 causes aberrant LD composition and morphology. Our study contributes to accumulating evidence that APOE4 astrocytes with large, unsaturated LDs are sensitized to lipid peroxidation, which could contribute to Alzheimer's disease risk. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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4. Nuclear movement in growing Arabidopsis root hairs involves both actin filaments and microtubules.
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Brueggeman, Justin M, Windham, Ian A, and Nebenführ, Andreas
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MEMBRANE proteins , *MICROTUBULES , *ACTIN , *HAIR growth , *NUCLEAR proteins , *MOLECULAR motor proteins , *MYOSIN - Abstract
Nuclear migration during growth and development is a conserved phenomenon among many eukaryotic species. In Arabidopsis, movement of the nucleus is important for root hair growth, but the detailed mechanism behind this movement is not well known. Previous studies in different cell types have reported that the myosin XI-I motor protein is responsible for this nuclear movement by attaching to the nuclear transmembrane protein complex WIT1/WIT2. Here, we analyzed nuclear movement in growing root hairs of wild-type, myosin xi-i , and wit1 wit2 Arabidopsis lines in the presence of actin and microtubule-disrupting inhibitors to determine the individual effects of actin filaments and microtubules on nuclear movement. We discovered that forward nuclear movement during root hair growth can occur in the absence of myosin XI-I, suggesting the presence of an alternative actin-based mechanism that mediates rapid nuclear displacements. By quantifying nuclear movements with high temporal resolution during the initial phase of inhibitor treatment, we determined that microtubules work to dampen erratic nuclear movements during root hair growth. We also observed microtubule-dependent backwards nuclear movement when actin filaments were impaired in the absence of myosin XI-I, indicating the presence of complex interactions between the cytoskeletal arrays during nuclear movements in growing root hairs. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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5. Lipid droplets go through a (liquid crystalline) phase.
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Windham, Ian A. and Cohen, Sarah
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LIPIDS , *SMECTIC liquid crystals , *LIQUID crystal states - Abstract
The article reports that Lipid droplets (LDs) are key organelles for fat storage and trafficking show that glucose restriction triggers liquid crystalline lattice formation within LDs, and structure consisting of a phospholipid monolayer surrounding a hydrophobic core of triglycerides.
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- 2022
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6. Analysis of fitness costs associated with metronidazole and amoxicillin resistance in Helicobacter pylori.
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Windham, Ian H. and Merrell, D. Scott
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HELICOBACTER pylori , *DRUG resistance in bacteria , *COST analysis , *ANTIBIOTICS , *AGRICULTURE - Abstract
Background: Increasing rates of antibiotic resistance are a major concern for all pathogens, including H. pylori. However, increased resistance often coincides with a decrease in relative fitness of the pathogen in the absence of the antibiotic, raising the possibility that increased resistance can be mitigated for some antibiotics by improved antibiotic husbandry. Therefore, a greater understanding of which types of antibiotic resistance create fitness defects in H. pylori may aid rational treatment strategies. Materials and Methods: While a wealth of H. pylori literature reports mutations that correlate with increased resistance, few studies demonstrate causation for these same mutations. Herein, we examined fitness costs associated with metronidazole and amoxicillin resistance. Isogenic strains bearing literature reported point mutations in the rdxA and pbp1 genes were engineered and tested in in vitro competition assays to assess relative fitness. Results: None of the metronidazole resistance mutations resulted in a fitness cost under the tested conditions. In contrast, amoxicillin‐resistant mutant strains demonstrated a defect in competition by 24 hours. This change in fitness was further enhanced by moderate osmotic stress. However, under extreme osmotic stress, the amoxicillin‐resistant N562Y PBP1 mutant strain showed enhanced fitness, suggesting that there are some pbp1 mutations that can give a conditional fitness advantage. Conclusions: Our results demonstrate the role of specific point mutations in rdxA and pbp1 in antibiotic resistance and suggest that amoxicillin‐resistant strains of H. pylori show environmentally dictated changes in fitness. These later finding may be responsible for the relatively low rates of amoxicillin resistance seen in the United States. [ABSTRACT FROM AUTHOR]
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- 2020
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7. Helicobacter pylori Biofilm Formation Is Differentially Affected by Common Culture Conditions, and Proteins Play a Central Role in the Biofilm Matrix.
- Author
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Windham, Ian H., Servetas, Stephanie L., Whitmire, Jeannette M., Pletzer, Daniel, Hancock, Robert E. W., and Merrell, D. Scott
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HELICOBACTER pylori , *BIOFILMS , *EXTRACELLULAR matrix , *PEPTIDE antibiotics , *CONFOCAL microscopy - Abstract
The concept of Helicobacter pylori biofilm formation is relatively new. To help provide a foundation for future biofilm studies, we characterized the biofilm formation ability of a common H. pylori lab strain, G27. The goal of this study was to evaluate biofilm formation by G27 in response to common culture conditions and to explore the biofilm matrix. Our results indicate that while various types of growth media did not dramatically affect biofilm formation, surface selection had a significant effect on the final biofilm mass. Furthermore, enzymatic assays and confocal microscopy revealed that proteins appear to be the primary structural component of the H. pylori extracellular matrix; extracellular DNA (eDNA) and polysaccharides were also present but appear to play a secondary role. Finally, we found that two well-characterized antibiofilm cationic peptides differentially affected early and late-stage biofilms. Together these results provide interesting avenues for future investigations that will seek to understand H. pylori biofilm formation. IMPORTANCE The study of H. pylori biofilm formation is still in its infancy. As such, there is great variability in how biofilm assays are performed across labs. While several groups have begun to investigate factors that influence H. pylori biofilm formation, it is not yet understood how H. pylori biofilm formation may vary based on commonly used conditions. These inconsistencies lead to difficulties in interpretation and comparison between studies. Here, we set out to characterize biofilm formation by a commonly available lab strain, G27. Our findings provide novel insight into optimal biofilm conditions, the biofilm matrix, and possible mechanisms to block or disrupt biofilm formation. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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8. SrrAB Modulates Staphylococcus aureus Cell Death through Regulation of cidABC Transcription.
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Windham, Ian H., Chaudhari, Sujata S., Bose, Jeffrey L., Thomas, Vinai C., and Bayles, Kenneth W.
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STAPHYLOCOCCUS aureus , *CELL death , *LYSIS , *EXTRACELLULAR matrix , *BACTERIAL operons , *LOCUS (Genetics) - Abstract
The death and lysis of a subpopulation in Staphylococcus aureus biofilm cells are thought to benefit the surviving population by releasing extracellular DNA, a critical component of the biofilm extracellular matrix. Although the means by which S. aureus controls cell death and lysis is not understood, studies implicate the role of the cidABC and lrgAB operons in this process. Recently, disruption of the srrAB regulatory locus was found to cause increased cell death during biofilm development, likely as a result of the sensitivity of this mutant to hypoxic growth. In the current study, we extended these findings by demonstrating that cell death in the ΔsrrAB mutant is dependent on expression of the cidABC operon. The effect of cidABC expression resulted in the generation of increased reactive oxygen species (ROS) accumulation and was independent of acetate production. Interestingly, consistently with previous studies, cidC-encoded pyruvate oxidase was found to be important for the generation of acetic acid, which initiates the cell death process. However, these studies also revealed for the first time an important role of the cidB gene in cell death, as disruption of cidB in the ΔsrrAB mutant background decreased ROS generation and cell death in a cidC-independent manner. The cidB mutation also caused decreased sensitivity to hydrogen peroxide, which suggests a complex role for this system in ROS metabolism. Overall, the results of this study provide further insight into the function of the cidABC operon in cell death and reveal its contribution to the oxidative stress response. [ABSTRACT FROM AUTHOR]
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- 2016
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9. Interplay between Amoxicillin Resistance and Osmotic Stress in Helicobacter pylori.
- Author
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Windham, Ian H. and Merrell, D. Scott
- Abstract
Rising antibiotic resistance rates are a growing concern for all pathogens, including Helicobacter pylori. We previously examined the association of specific mutations in PBP1 with amoxicillin resistance and fitness in H. pylori and found that V374L and N562Y mutations were associated with resistance, but also resulted in fitness defects. Furthermore, we found that hyperosmotic stress differentially altered the fitness of strains bearing these mutations; survival of the V374L strain was decreased by hyperosmotic stress, but the N562Y strain showed increased cell survival relative to that of wild-type G27. The finding that amoxicillin-resistant strains show environmentally dictated changes in fitness suggests a previously unexplored interaction between amoxicillin resistance and osmotic stress in H. pylori. Here, we further characterized the interaction between osmotic stress and amoxicillin resistance. Wild-type and isogenic PBP1 mutant strains were exposed to amoxicillin, various osmotic stressors, or combined antibiotic and osmotic stress, and viability was monitored. While subinhibitory concentrations of NaCl did not affect H. pylori viability, the combination of NaCl and amoxicillin resulted in synergistic killing; this was true even for the antibiotic-resistant strains. Moreover, similar synergy was found with other beta-lactams, but not with antibiotics that did not target the cell wall. Similar synergistic killing was also demonstrated when KCl was utilized as the osmotic stressor. Conversely, osmolar equivalent concentrations of sucrose antagonized amoxicillin-mediated killing. Taken together, our results support a previously unrecognized interaction between amoxicillin resistance and osmotic stress in H. pylori. These findings have interesting implications for the effectiveness of antibiotic therapy for this pathogen. [ABSTRACT FROM AUTHOR]
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- 2022
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10. CidR and CcpA Synergistically Regulate Staphylococcus aureus cidABC Expression.
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Sadykov, Marat R., Windham, Ian H., Widhelm, Todd J., Yajjala, Vijaya Kumar, Watson, Sean M., Endres, Jennifer L., Bavari, Arissa I., Thomas, Vinai C., Bose, Jeffrey L., and Bayles, Kenneth W.
- Abstract
The death and lysis of a subpopulation of Staphylococcus aureus cells during biofilm development benefit the whole bacterial population through the release of an important component of the biofilm matrix, extracellular DNA. Previously, we have demonstrated that these processes are affected by the gene products of the cidABC operon, the expression of which is controlled by the LysR-type transcriptional regulator, CidR. In this study, we characterized cis- and trans-acting elements essential for the induction of the cidABC operon. In addition to a CidR-binding site located within the cidABC promoter region, sequence analysis revealed the presence of a putative catabolite responsive element (cre box), suggestive of the involvement of the catabolite control protein A (CcpA) in the regulation of cidABC expression. This was confirmed using electrophoretic mobility shift assays and real-time reverse transcriptase PCR analysis demonstrating the direct positive control of cidABC transcription by the master regulator of carbon metabolism. Furthermore, the importance of CcpA and the identified cre site for the induction of the cidABC operon was demonstrated by examining the expression of PcidABC-lacZ reporter fusions in various mutant strains in which the genes involved in carbon metabolism and carbon catabolite repression were disrupted. Together the results of this study demonstrate the necessity of both transcriptional regulators, CidR and CcpA, for the induction of the cidABC operon and reveal the complexity of molecular interactions controlling its expression. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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